| mature miRNA: CACATTCGGTCAATGTTC species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161924698|gb|DB910820.1|DB910820 DB910820 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): GTATGCTATGACAGACCCGGAAGGAGCCTGAGTAGAAGAGATTGATCGGTTACCAAAATACAAGTTTTGCAGGGCAGAGGCTTTTGAGAAAGTTGATGGTGAAATTCCAGAAATTTGTGGAGGGATGATGACTGAATGTGACAATGACACACCCATTGAACGTGCTGTCTCCCATGAAGACGCTGAATGTTGCATTTGCCTTTCTGCCTATGAAAATGGAAGTGAACTACGTGAACTTCCTTGCAATCACCATTTCCACCATATGTGCATAGACAAGTGGCTTTGCATCAATGCAACCTGCCCTCTCTGCAAGTTCAACATTGTAAAAGCTGGCAATCGAAGTGGTAATGAAGAAGCATAAAAAATCAGGTTTTTCGAGAAGAGCATCTTCCCATAATCTGAGTGTATCATACCTTGCAGTTCTTGTTCTTTGAATAAAAGAAACAGAGAGTCGATCAGCGATTGGTGCCTGCTACTTTCTAGCCTCCAAAACTCAGCCTGTTGTACCAAATGCAGGCATTCAC | |||||||||
gi|161925985|gb|DB894006.1|DB894006 DB894006 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): GTACACTTGAAGTTGTCATACCAGAGCCTGCCGTCCCCAAGCTCATTACAAAATCAAAAAACAAGCTTGCACAGATTAGTGAGTTATCTGGAGCCAATGTAACCCTTGTTGAAGATAGACCGGATGTGAAAGAAAAGATTATAAAAATATCTGGAACACCAGAGCAGGCAGAGAGAGCTCAGAGCTTGCTTCAAGGCTTTATTTTAAGCACACAAGAAGATGGACCTTAGGCTAATCACTGAAGCCGAAGAACTTGAAGTTGGAGCTGGAGCTGGCTTCAAACGGGAAGGGTTCCTGATGCCCCAGGTATACATCCCTGGAGAATAAGGAGCATTGAGTCCCCTTTTTGCATGTATTTTTCATTCGGTTGCTGTTTTAAATCATTAATCTCGAGAGCAAGAATTCATCTGTAAATGTAACTATGGGAACTCTGCAATGCTTCAAATTTTCCTGTATGAATTGCAGTTGTTCTGTTGTTTCGTTTCTTAATGTATTTCTCCTTTGCAC | |||||||||
gi|161902218|gb|DB890402.1|DB890402 DB890402 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): GGCCTCAAAATGCCCCAAGGCCAGCAACAAGAACATGCAGCAGCAGCAGCAGCAAATAAATCAAACAAGTAGGATCCTCCTCTAATCCAATGCGCAGACCTAATCCTGCCATGGCTAACCCCACTTGAACTAGCCAACATTTCCTCAACCTGCAAAGCCCTTTCTCAAATCTCTAAATCCATCACTCTCCAGCGAACCCTCGACGCCTCCAGATTCTTAGAGAACCACCTTACCCCATTTCTCAACCCCAATAACCAACACCCTTATGCATATTTCCTCTACACCCCTTCCCAACTCCTTCCCTCCCAATCCCCACTTCGCCAGCCTTGGGGCTCACAACTCGATCGTGACTCTCTGGGTCGACACCATGGTGGCTCAGCTTGCAAATTGAATGAGTCCAGGGAGGTTTTACGTGGGTCTGATTCGGAATTGGCGACTCCGCGCCGTGTTATGGGTGAGTCAGGGAAGGGTGTGTGTGGGTGTGATTGTGAAGGGTGCGAAGAGGGTGGGACAGGGTGGGAATTTTGGGGGTTGGAGGAAATGGGGATAATGACCGAGTGTGGACCGGGTTGTGGGTGTGGGTTG | |||||||||
gi|161924858|gb|DB894360.1|DB894360 DB894360 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): CTAAAGAAGAGATTGATCGATTACTAAAATACAAGTGGCAGAAGATAGGGAATTGTGAGAAAGTTAATGATGAAAGTCAAGAGTCTTTTGGTGGGATGATGACTGAATGTGACACTGACACACCCATTGAACGTGCCCTTTCCCGTGAAGACACGGAGTGTTGCATTTGCCTTTCTGCCTATGAAGATGGAAGCGAACTACGTGAACTTCCTTGTGGTCACCATTTCCACTGTATGTGCATAGACAAGTGGCTTTGCATCAATGCAACCTGCCCTCTCTGCAAGTTCGACATTCTAAAGGCTGACAGTCAAAGTGGCAGTGAAGAAGCATAGAGATCAGCCATTTGGAGTAGACATCTTCCCTAGACGAATCATGTGGCCCTGTAGTGTGGAGCTGTTTTTGTTTTTTTGGTCACAAGCAGCATCTGCTCGGTGCTTTTGATAAGAGCGACCAAGCAATCTGTGCATTATTATTACTATTACTATTATTATCCACGAGTTCTGGAGGATTTTTTTTTTTTGTGTTTCTGTAAAGATGCAGTTTTCTCAACTTCTTCCCCCTTTTCTCAGTATGTAAGTGACAAAATAACCATGCTCAATTAGATGGTGGTTCCTCTTGTGCC | |||||||||
gi|161935107|gb|DB895861.1|DB895861 DB895861 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): AAGGTTCAGATAAGTCCACAGACTGCTAATGGCATCCGCAAAGTCAAAGACCGATCTAAACAGGATCGACGAACAACAAAAGCAGATCCCGAGAAGATTGCTGGGCCAACAAATGCAGACATATCTGTACAGTCATGACTTGCTGGTTTTTACTAACTCTTAAGTGGGAAAACATCTTGATTTGCTTTAATCATCATAGAGGATGTTTGGAGAGGAGATAGCCTACTTTTCAGCTGAGATGACCTTTTCTTCTTCTTCTCCTCATACTTTCCCCCCCTTTCCAAACGGTTTGTATCTGTGAATTGTATATGTTATGTAAGTTATATCAGTACATATCATGTTATCAAAAGAGTTACTGATTCTAATATGGACCGAATCTGTTGTTTTCGTCTGATGTATTATCACCCAAGAGGTTTTCCTGCGTATGTTATTTGGAAACTCAAGGCACTAGTTTTGGTCTGGTTAGTTGGTTGTTTTCTTCATTTTGAAACATGTAACTTGTATAACCTCTACTTTCGTAACTGCTACATTATATTGTA | |||||||||
gi|161916118|gb|DB904546.1|DB904546 DB904546 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): AGACTGCTAATGGCATCCGCAAAGTCAAAGACCGATCTAAACAGGATCATGTTGCAACAAAAGCAGATCCCGAGAAGATTGCTGGGCCAACAAATGCAGACATATCTGTTCAGTCATGAACTGCTGGTTTTTACTAACTCTTAAGTGGGAAAACATCTTGATTTGCTTTAATCATCATATTGGATGTTTGGAGAGGAGATAGCCTACTTTTCAGCTGAGATGACCTTTTCTTCTTCTTCTTCTCATACTTTCCCCCCCTTTCCAAACGGTTTGTATCTGTGAACAATATATGTTATGTAAGTTATATCAGTACATATCATGTTATCAAAAGAGTTACTGATTCTAATATGGACCGAATCTGTTGTTTTCGTCTGATGTATTATCACCAAAGAGGTTTTCCTGCGTATGTTATTTGGAAACTCAAGGCACTAGTTTTGGTCTGGTTAGTTGGTTGTTTTCTTCATTTTGAAACATGTAACTTGTATAACCTCTACTTTCGTAACTGCTACATTATATTGTACACGGGGCGAGGTTCTTGATGTTTGAAT | |||||||||
gi|161905732|gb|DB879175.1|DB879175 DB879175 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): GCGCGGCTCACACTTTTCAAGCAAAGACTAGGGTTTTTAGCACAATTCTCTCCAAACTTGCTTTATAATCGACTGCACACACGGCTCGAGACCCAGAGAGATAAAGGTGCTTTTTTGGTGAGGTGTTTGTAAAAATCTAGAAATGCAAGCCACCAGTGGAGCCGCAGTGATGGGTTCTTTGCAACAGCCTGTTTTGTCAAAAGGGCCAGCCTTTCCAGTGAAAAGGAGTGTTATCATTGGGTTTCCGTATCAAGTTAAGCTTAATTCAGTGAAGCCATGCAGGGCTTCTTCCCTTGAAGGAAGCTTGGTCACTGGCAGACCCCCCTCTTCTGTTTCTGTGCCTATCCCTGAAACTGGAGGTAACCATAATATCTTTTGTTCTTTTTTATTGTTCTCCTGCTCGTCTCTTGAAGTCCGAACAAGTGAACATAGACCGTATGTAATTGTTGTGATTCTATTGAAAGGGTTGGTTTCTTAAGAAAAAATTTGTGCTTTGTTGATATATTTTAGCTGTATTTCAAATGTTATCACAGAGTGTCTAGGTTTTAAGGGCTATCAATTTTCAATAGAATACGTCAGTTATTTATTTAACTGTTTGGTTGGCTTTATGCAACGAGAATGACAAATAGAATGATATATAATATGACTCTAG | |||||||||
gi|161904639|gb|DB886601.1|DB886601 DB886601 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus CACATTCGGTCAATGTTC EST sequence (targeted fragment marked with yellow): GAAGCTTCGTGTAGCTCTTTTCCGCCTAAAATCCAAAAGAGAAATAAGCCGGTTACATTTCATTGATGGCTGGCTAGACACAGGATTTATCAGATATTTTTTGAGTTTATCACTTGAATATTGACCGAATATGGATGAAAAGTTGTTCTCTGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGGGCATGAATGGTCTGAGTTTTGCCAGTTTGAGCTGAAATGGCTAACTCTAAGCTCGTGGCCCAGAAATCCTAGGTTTGCCACTCAGGAGTATCGGCTGCAGATCCCTTTCATAACACTGACTGCCGTCTTTACAAAGAATTGGAAACTGAGGGGATAAGGAATTGAAGAAAAATGGCAGACCGAAATTTCCCCTTTCTTGACACACACACACACACACACACACACACACGTTTATATACATACAAACATACATATATTTATATATAAGACAAAAGTTTGTGCCTGCAATAAAAGAAGTGAAATATCGGGCTTGACAGTCTAATATTGCTTTCTTGTCACTTGATATAGAAAATTTTCAGTATTTAAGATTTTGGTCACAAAGCCTTTCAAGAACTCTGCCAGTTTGAGTTCTGCAGGAAGTCTCCAAGAGCAAATTTTATGTGACGGTGATTTTAA | |||||||||