| mature miRNA: CACCAAAGGCCTCCGCCCTTC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164363973|gb|ES816542.1|ES816542 UFL_274_28 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): GGCACGAGTGATTCCTGGGTGTTGAAACCACACCAAGTTTCAGTAACTTGGCATTCAATTAAAGGGGTTAATGAAGAATCGTATGCTGAGATTGTAACTGCTCTTGCTAAGGACGTTGATGCCTTGGATTCATCGGCTATAACGACGAAATCATCTTATTTTTATGGCAAGTTGATTGCAAGAGCAGCAAGGTTGGCTTTGATTGCTGAAGAAGTGTGCTTTCTTGATGTGATTCCAGCTATAAGAAAGTTCTTGAAGGATACAATTGAGCCATGGCTGGATGGGACTTTTAATGGGAACGGTTTCCTGTATGAATCGAAATGGGGTGGAATTGTGACTAAACAAGGGTCAACGGATTCAGGGGCAGATTTCGGGTTTGGAGTTTACAATGACCACCATTATCATATTGGTTACTTCCTTTATGGAATAGCTGTCTTGACCAAGATTGACCCTGCATGGGGAAGGAGGTATAAGCCCCAAGCTTATTCACTTGTGGCTGATTTTATGAACTTCGGCAGGAGATCGAATTCAAATTATCCAAGAGTGAGGTGTTTCGATTTCTACAAGCTCCATTCTTGGGCTGGAGGGTTGACTGAATTTGCAGATGGAAGGAATCAAGAAAGCACTAGTGAAGCTGTTAATGCATATTACTCTGCTGCACTAATGGGGTTAGCCTATGGAGACACCCATCTTGTTGCAACTGGTTCAACACTTACAGCACTGGAGATTCAAGCAGCGCAAACATGGTGGCATGTTAAGGAAGGAGATAATCTATATGGAGAAGAATTCACTAGAGAAAACAGAGTTGTAGGTGTTTTGTGGGCCAACAAGAAGGACGGTGGTCTTTGGTTTGCTCCTCCTGACTGGAGAGATGGAGGCTTGGAATCCAATTGCTACCATAATTGCTAACAGGGAGGTATTGGTTCCCGGACTTTGAGTTTCCAAACAGCTTGGGAACTGGAAATTGCAAGCCCTGGGAAGGGAAGGGGAAGGAAAGGGGATGGAAGGGGTTTTGTTATGCCTTGGAAACATTTTTGAAAAAAAAAAGGGTTTTGAAAAGAAAAAGGAACCTTGCGGGCCTGGAAGGAGGGGATTCTCCTTCTATTCTTCTTGGGGGGGGGTCTATAAAAAAGGGGAAGAGAATTTAAAATTTCAAAGGGGG | |||||||||
gi|109862773|gb|DW491750.1|DW491750 GH_RMIRS_087_G01_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): GGATTCTTCTTTGCCGGGGTTGTACTGAATCGATTTGCATTGATTAGAAATCTTACAGATGTCAAAGTCCTGTCTGAATGGGGGATACTTTTTCTGCTGTTTGAAATGGGTTTAGAGCTATCACTTGATCGCCTGAAAGCTCTTGCTAAATTTGCTTTTGGCATGGGATTAACTCAGGTCTTTCTGTCCACCCTTGCTTTCACCGCATTTGAACTTCCGCCTAACGGGGCTGTTGGAACAAAAATTTTGCAGTTCCTCTTTCACTCTGGGCCTGACCTGGTTAATATAAGAAGTGTTGATGAAGCCATAGTGATTGGTGCTGCTTTATCTCTATCTTCTTCAACTTTTGTTCTACAGCTTCTTGCAGAGAAGGGTGAGCTGCCAACAAGATTTGGCTCAGCAACTCTGGGGATACTACTTTTACAGGACATAGCTGTTGTTCCTCTCTTAGTCATACTTCCAGTGCTCGAGAGCCAGAACATAATAGAGGACAGTATTTGGCCAATGCTAGCTAAAGAAAGTTTAAAGGCGCTAGGTGGGCTCGGTATACTTTCTCTTGGAGGAAAATACATTCTTAGGAGAGTTTTCGAGGTTGTTGCTGAAACAAGGAGCTCGGAGGCCTTTGTTGCTCTTTGCTTGTTAACAGTTGCAGGGACTTCCCTTATGACCCAACATTTGTCTCGTCCTCTGCCTGATGTAA | |||||||||
gi|164242609|gb|ES794400.1|ES794400 UFL_540_12 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTTTTCTGGCGAGTTGCAACTGGTTTGAAGGTCAGAATCATGGGTCCAAACTATGTACCTGGGGAGAAGAAAGACTTGTATGTAAAGAGTGTACAGAGAACTGTGATTTGGATGGGAAAGAAGCAGGAGACAGTTGAGGACGTTCCTTGTGGTAATACAGTTGCCATGGTTGGTTTGGATCAGTTCATCACCAAGAATGCTACATTGACCAATGAGAAGGAAGTTGATGCCCACCCAATTCGTGCCATGAAGTTTTCTGTCTCCCCTGTTGTCCGTGTTGCTGTTCAGTGCAAGGTTGCATCAGATCTTCCCAAACTTGTTGAAGGGTTGAAGCGTTTGGCCAAGTCTGATCCTATGGTTGTCTGTACCATTGAAGAGTCTGGTGAACGCATTGTTGCTGGTGCTGGAGAGCTCCACCTTGAGATCTGTCTCAAGGATTTACAAGAAGATTTCATGGGTGGTGCTGAGATCGTCAAGTCAGACCCGGTTGTGTCCTTCCGTGAGACTGTCCTTGAGAGGTCTTGCAGGACTGTGATGAGCAAGTCTCCTAACAAGCACAACCGTCTGTACATGGAAGCTCGACCCTTGGAGGAAGGTCTTGCTGAGGCCATTGATGAAGGTCGTATTGGTCCAAGAGATGATCCCAAGGTTCGTTCCAAGATTTTGGCCGAGGAGTATGGGTGGGACAAAGATCTTGCTAAGAAGATTTGGTGTTTCGGCCCTGAGACAACTGGTCCTAACATGGGGGTTGATATGTGTAAAGGAGTTCAATACCCTAAATGAAATCGAGGGCTCTGGGAGTGGCGGGTTCCGGGGGGGGTCCAAGGGAGGAGCGATAGCTTAAGAAGAAATGGGGGGGTATCTGCGTTGGGAGGGGGGGGAGGGGGGGTCTCCGGGGTGGAGCCGTCCGAGAGAGGGGGGTGGGCAAATCATACCGGCTGGGGCGGGGGGGGTGTTTGTAGGTTGTCGGTTGAGGGGGGAGGCGGAGGGTATGGGGAGCGGGGTTCAGGGGGGTGAAGTTAGAGGCCGCCGTGAAAAGGCCGCTTGGGGTGAAATTTAAGGGGGGTCTTGGACGCAAAGAGCGGAGAGGGGGGGTTGAAGGGAGGGGGAGGGGGGCGGAGGGAGTGACGGTTGTGGGGAGTTGGGGGGGGAGAAGGCTTTTGGTGGGGTTTGGGGTGGGATGGTGAAGGGATATGTGGAGACAGAAGTCAGGGCGGGGCGTGGGCGGCGCCCCGGGAGGAGGGGGAGGTGTGTGCGGCTGGGAGAGTGGGTGTGGGTGTGAAGGTGGAGAGAGGCGGGGGG | |||||||||