| mature miRNA: CACCAAAGGCCTCCGCCCTTC species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215790130|gb|CU546151.1|CU546151 CU546151 COSSHPPS_KZ0AA Theobroma cacao cDNA clone KZ0AA2YE22, mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CGCGGGCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGCAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATCAGGCACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACACGAAAAACCCATTGTTCAACTCTTTGACAACACGAAAAACCCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATCCATGGGATGGAAGGGCGGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCATAATCACTAGCCAATATGCTTTTCTTTTTCTCGCACGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACAACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATAAAAAAAAAAAAA | |||||||||
gi|212166834|gb|CU502123.1|CU502123 CU502123 LESSHPNGRSb_KZ0ABP Theobroma cacao cDNA clone KZ0ABP4YC08FM1, mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CGCGGGGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTCGAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAGCAGACCGGCAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATCAGGCACTCGCCGTCTATTTTCATTGTTCAACTCTTTGACAACACAAAAAACCCCTTGTTCACCTCTTTGACCACCTGAAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATCCGTGGGATGGAAGGGCGGAGGCCTTTGGTGTCCCCTCCCGTCAAGAATTGGGGCCTCATAATCACTAGCCAATATGCTTTTCTTTTTCTCGCACGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACAACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCNGGATGATAAAAAGCTTAACACCTCTCATTCTTATTACTTTTTCAATATGAAAAAAAAAAAAAAA | |||||||||