miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CACCAAAGGCCTCTGCCCTTC
species: Aquilegia formosa x Aquilegia pubescens
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|74565400|gb|DT761706.1|DT761706 EST1195555 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1YM13, 

CACCAAAGGCCTCTGCC-CTTC
|| |||||||||||||| ||||
GTTGTTTCCGGAGACGGAGAAG

EST sequence (targeted fragment marked with yellow):
CACGACAACCCATTGCTTCTACCTTCTTTTCCAATCATGTACAGAGCAGTTGCTAACCTTGCTTCCAAAGCCAGGATTGCTAGGAAGCAAAGCCAACAAATTAGTAGTAGGTGGAGTTGGAGTAGAAACTATGCTGCAAAAGATATTCAATTTGGAGTTGAGGCTCGTGGATTGATGCTTAGGGGAGTTGAAGAGCTTGCAGATGCTGTGAAAGTCACTATGGGACCAAAGGGACGTAATGTTGTATTGGAACAAAGTTTTGGTGCACCGAAAGTGACTAAAGATGGTGTGACTGTTGCTAAGAGTATTGAGTTCAAGGACAGAGTTAAAAACATGGGTGCTAGCCTTGTAAAGCAGGTTGCAAATGCCACCAATGATGTGGCAGGCGATGGTACAACCTGTGCCACTGTCCTTACACGAGCAATATTTTCAGAAGGGTGCAAGTCAGTGGCTGCTGGAATGAATGCAATGGACTTAAGACGTGGGATCAATATGGCTGTTGATGCTGTAGTTACCAACTTGAAAAGCAGGGCAAGAATGATTAGCACTTCTGAAGAAATAGCTCAGGTTGGTACTATATCGGCAAATGGGGAAAGGGAGATTGGTGAGCTAATAGCAAAGGCTATGGAAAAAGTTGGCAAAGAGGGGGTTATAACAATTGCTGATGGTAAGACACTGTACAACGAGCTGGAAGTTGTCGAGGGAATGAAGCTGGAAAGAGGATATATATCCCCTTATTTTATCACCAATGAGAAGAACCAGAAATGTGAATTAGAGAATCCTCTCGTATTAATCCATGAGAAGAAAATCTCGAGCATAACTTCTGTGGTAAAGGTCTTAGAACTAGCAATGAAGAGGCAGAGGCCTTTGTTGATAGTTGCAGAAGATGTTGACAGTGAAGCACTTGCA


gi|74564004|gb|DT760911.1|DT760911 EST1194760 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1YH42, 

CACCAAAGGCCTCTGCCCTTC
| |||||||||||.  |||||
GAGGTTTCCGGAGGGAGGAAG

EST sequence (targeted fragment marked with yellow):
ATTTTCTTCTAAACATATTTCTATCATCCCAAGCAAGCCTACAACAATCCCATCTTTCTCCCAACCATTTAAATCCCAACAACAAAAATCTTCTCTTTCATTTAGATACAGAACAAGAAGTAAATTTAAGTTAAACTCCAGTAGGATCTCTGGAGTGTCAACTGAACCTGAAGGCAAAATTATTCCAAGCGTAGAAAATGAAGGAGAAACAGAGAAGTTTGATTGGTATTCACATTGGTATCCAGTTATGCCACTTTGTGATCTAGATAAAAGAGTTCCACATGCTAAGAAGATTTTGGGCATTGATGTTGTTGTGTGGTGGGATAGAAATGAAAAGAAATGGCAAGTGTTTGAAGATAAATGCCCACATCGATTGGCACCACTTTCGGAAGGAAGGATTGATCAATGGGGACGTCTGCAATGTGTGTATCATGGTTGGTGTTTTATTGGAAGTGGTGATTGTAAGTTTATTCCTCAGGCACCATCTGATGCCCCCCCGGTAAACACTTCCAAGAAAGCATGTGTAGCTGTTTATCCAACTATTGAGCAAAACCAGATTCTATGGTTCTGGCCAAATTCTGCATCCCAGTACAAAGATATTGCAGTGAAAGAAAAACCACCTTACATCCCGGAGTTAGATGACCCATCATACTATACACCCACAATATCGACTAGAGATATTCCATACGGGTATGAAGTTCTGATTGAAAATTTCATGGACCCTTCTCATATTCCATATGCACATTATGAAATATTTCCTTCGCCAAGTGACAAATCAAGGTCTAAAGCTGACAGAGAAGGAGGGAGGCCTTTGGAGATAACTGTACAAACATTAGATCTAAATGGTTTCTT