| mature miRNA: CACCCACACATCAGGGGAAG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73896903|gb|DT499641.1|DT499641 WS0118.BR_O06 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_O06 5', mRNA sequence CACCCACACATCAGGGGAAG EST sequence (targeted fragment marked with yellow): GTTTGTGTCAAAGATGTCCTCTTTGAACCAGTTCGTAAAACCCAAGATGCTATGTTTTTCATACATACTTCTGATGATATGTGGGTGCCTTGTGGACCGAAGCAACCTGGTGCTGTCCAAATTTCCATGCAGGACCTTGCAGCACAAGGGCTTGCAGAAAAGATCCTTCCACCCCCTATCATGAAAACAGATTTTGACAAGGTCCTAGCAAGACAAAAGCCAACAGTGAGCAAAGCTGATCTAGATGTCCATGAGAGATTCACAAAGGAGTTTGGGGAGGAAGGTTAATGAAGATGATGACAGAGACACACTGGCCAATGCCTGTGAGTGCAACCTATGTGATTAGTTATTGCTGCTGGATCCACCGAAATATTTAACTTTGGGGAAGGTGACTTGACCTTCCCTTTGTATTGGGATGGAATGACTGAAAACGCTTGTTTGAAATTGTGTGAAAAGAAGAGTTTCAGAAATATTGTCCCAGGATCGTGGACATGATGCATATATTATGCTTCTTGCCAACTAACAAAAAAAAAAAAAAAA | |||||||||
gi|73868623|gb|DT471361.1|DT471361 WS01213.BR_I15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_I15 5', mRNA sequence CACCCACACATCAGGGGAAG EST sequence (targeted fragment marked with yellow): GAAAATCACACTGTTTATCACTTGGTTTTATGTTTCAGGTTTCTAATGGCTTCTTTATGGAGCCCTGGAATTTTCCTTGCTCATGTTCTTGCTCTACTGTTGAAGGCTTTGCCCCTAGTGATTCTTGCTGAAACCAATGTTTACATTGTGTATATGGGAGACAAACTCCATGACGAGCCTGAGCTGGTTCAAGAGTCCCATCATGAGCTTCTTGCTGATATTGTTGGAAGCAAAGACGCTGCAAAGGAATCGATTTTGTACAGCTACAAGCATGGATTTTCAGGATTCGCTGCCGTGTTAACCAAGTCCCAAGAGAAGCTTATTGCAGATTTCCCTGGANGTGTTGGTGTTGTTCGAAACAGAATTATTACTTCCCACACAACTAGNGAGTTGGGATTTTCTACAAGTCAAGCCTCAACTTGTGGGTCGAATTTCCACGGGACATTCCGGGGCTGGTTCCATCATTGGTGTCATGGACACGGGTATATGGCCAGAGTCGAAAAGCTTCAGAGATGAGGGTATGGCAGAGGTGCCATCTCGTTGGAGAG | |||||||||