| mature miRNA: CACTTCATAGTACAACGAATCT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29640175|gb|CB645184.1|CB645184 OSJNEb06L16.f OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb06L16 5', mRNA sequence CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): GGACCCTACTACCCTTTGGAGCTGGGGCGGCTTGACGGCAAGGTCGGGACGCGCGCCGTGGTGAAGCACAGCCTCCCCGGCGCCGCCTTCGACCTCGACCAGCTCAACAAGCTCTTCGCCACCAACGGCCTCACCCAGACCGACATGATCGCCCTCTCAGGTATCAAAAACATGACAAATTTTACAGTACCAAAATTTTGTATTCTGAGTGCCAAATTCTACACTAGAAAATATAACAATCTAAAACCGGATGTGACACTTTATAGTACAACGAATCTGGACAGAAAACATATCTAGATTCGTTATACTATGAAGTGTCTCGTTCGGTACTAGATTGCTATATTATAGGACGGAGAGAGTATCTTCTTAAGAATTATAAAATCACTCTAAATCGCTATAAAATTGGGAATTCTCGGTGTTAAATGTTACAATAGAATAGAATATATGGTATCTTGGAGTATCTTGAGCTATATCTTCTTAAAAATTGTAAAATCACTCTAAAAACGTACTAACACAAATTCCTTTTTATAAAATCAAATTCTAAAACTAATTTATAAAATTCAAATGAACTTTTGGGTGAATCTGTTTTCATCGTCTGCTTGTTAGCTTATCAGTCGTAACGAATGTGGTGCAGGAGGGCACACGATAGGGGTGACGCACTGCGACAAGTTCGTGCGGCGGCTGTACCAGTTCAAGGGGGCGGCGCCGCAGTACAGCCCGCCGATGAACCTGGCGTTCCTGCGGCAGATGAGGCAGACGTGCCCGCTCAGCTACAGCCCGAC | |||||||||
gi|86523045|gb|CI163251.1|CI163251 CI163251 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): AGTACAGTCCGGACAAACCCTGTTTATGTGCTATTGCAACATTTCCATACGGGCCTGGATAAGGAGTCTGCATTCTATCTGGATTCATTGATTTCAAAATGTTGCTACCTATTGCAAAATTAGACATTTCCTATCTATCTAGATTCATTGTACTATGAAGTACAACACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCTCACATTCATATTGATGCTAATGACATATATATCTGTCTAGATTCATTAACATAAGTATGAATGTGGGAAATGTTAGAATGACTTACATTATGAACGGAGGATGTATCTAATTAATCATATACCAGGTAGTAATATTTTTTATAAGTAATATATGAAAATGGCACTTCCCCACAAAGCCTATATGTCTTTAATCGTAATCTATATGATTAAGCGGGATTGGGTTAACAAAATGGCTCTCGAACATATCCTTTAGCCCCAGGCTATTGCTGAAGCCATTCTTCTTGCCATGGTATAGGAGGGTGGCGGACATGCACAGGTTGGCGATCCGCTGCACGAACGGGAGGAACGCGCGGTGCTTGAAGCG | |||||||||
gi|33675608|gb|CF303847.1|CF303847 ABF1--03-G02.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): GCACGAGGCTGTGGATGAAGTTGCTAGAAGCTTGGAAAGAGTTCTACTTACTATGCGGATAACTACTTCTGAACCTAAGGAGCTAGCTTTTGTTGTGGATGGTTGGGCTCTTGAAATCATCCTGTCACGCTACAATGAAGCCTTTACTGAATTAGCAGCTCTTTCAAAAACAGCAATATGCTGCCGGGTTACACCGTCTCAGAAAGCACAGCTTGTAAAGCTTCTAAAATCATGTGACTATCGAACTTTGGCTATTGGAGATGGTGGGAATGATGTCAGGATGATACAACAGGCTGATATTGGTGTAGGAATTAGTGGCAGAGAAGGTCTTCAAGCAGCAAGGGCTGCTGACTATAGCGTTGGCAGTAAGTCTTTCTTATCAAATTGCCCTTCATGTTATCCCCCATTACTTAATGAAGTTTTGTACCTCATCTTACTATGAATCTGGAGCTAAAACTATGAATCTGGTGCCTATCCAGATTCGTAGTACTATGATGTGTCCCATCCAGTACTAGGTTCTTATATTTTGGGGCAGAGTTAGTATGTGTTTTCATTTTCTTCTAATGTGAATTCTAATATGTT | |||||||||
gi|117250648|gb|CT857171.1|CT857171 CT857171 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): ACGACGTGAGCTGTGTTTGTTCTGTTCTGTTCTGAATTCTGATCCAACAACGTCCCAACTACCGGACTTATTCAGAGGACATGGAACTTCTCGCTGAATCGGCTGGAAATTCCATATCCGGACATGCTTTCTTTTCAGATTCGTTGTACTATGAAGTATATGTCCTATTCGATACTAGGTTGCTATATTACTAAGTAGAAAATCATCAAAACAATGCATGGGGCTGGTTGACATGTATTGTTCTTATAGAGTTGGCATGTAATTGCTAAGGGTTGTGTGAACAATGATGGAGAATTTGATAGGAACTTTTTTGTAGGATTTTATTATATTGTAGTCTTTTCCTTGCAAGTCCTTTAGCTTTGCTTGCACTTTGCAAGAGGCACTTTCTTTTGGGTATTCTTCTTCTTTTTTGCAAGGGGGTATTGCCCCATTTTCTTTTGGGAATTTTGTGCTTTAGTTCATGAGGATCTGGAAACAGGTCATTTTTCCCCTGACTCCAAAATGAGCATGCAATGATGCAAGCGTCCAATTGCAAATACTTTCTATAATCTTCTGGAATTCTCTGATGGTATTGCTAGGTTCAACAGGTCCAAGAGGTGCATCAAGAAGTTGCCCTTCCTGTAGCACCATCTATCATCAATGATGTTGGACAGAAGATGGCGGGGAACATACTTTTGCTCATCTGTCTTGGCTGCAATGCCTCAGGGACTTATGTTTGCGCCAACACAATCCCTTCGCCGGAAAACTCGCCGTCGGAATTCGCCCAGAATTGTTCAGTCTAAACCAAACAAAGCCTGCCCCCCGTGTTCATCGGGCGGCGGGGAACATTCGGGTCGCCGCCAATCGCTGGGCAAAACCCGGGCAAGGAGGGTGAACCCCCCCCCGGGCCCCAACGAACCAGCTCTCGGCACCAATGGGCCAAATTCCCCGGAAGGAAGCCCAAACTTTGGGGGTCCCCCCCCAACCTCCCCCGGGGGTTCCCCCCCGGGCAAAAAGGAAACCCCCCCCGGGGGGGGCCGGGGGAAAAAAATTTGTTGGGCCCAGGGACCCCCCGGGGAAACACCGTATCTCTTCCCCCCCCCCCCCGGGGAAAGGGCCCCACCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCGCCCCCCCGCCCCCCCCCCAACCCGCCCCCCCCCCGTGGGAAAAGGGGGGTGTTCCTAGAAGAAGCCGGGGGGGGTGGGGCTGCCCGGGGGGGCGCCCCCCCCGCCCCGCTCTGTTTTAAGGGGCGGTCTCTCTCCCCCTCTCCCCCGCGGCGGGGGGTGCGGTGGTGG | |||||||||
gi|88218935|gb|CI216933.1|CI216933 CI216933 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): TACGGCAAAATTTCCAGATTTGTCATGATACCAACGAGTGTTTGTACATGTAAAATTACGTGTAAGCTATACAATGTCCTGCACTCCTACACCTAAAGCTAAAAGAAACTACCTGCATACTTACTGAGTGATGGTCTGACGGAGGGTGTTGTGATCTGCAAGTCTGCAACCGTCGCCTATACCGAATGATAGAAGGACAACAAAATTCTAAATCGCGTACCCATAAAAAACCAATCTAGTACTGGACGTTGACACATCCTAATACTACGTATCTGGATAGCGATATGTCTAGATTCGTAATACTATGATGTGTCAACATCAAGTATTAGGTTGGTTTTTTATGGGATGGAGGGAGTATGATCTAGCTGCAGTTGCTACGACGGTCCTGCGCTTAAGCGACATTGCAGTCTGATTTACACCTGCGCATCCTGCCAAATAATCTTGCTTGCAGTGTCACAATAGCATCAACTGTAGTTGAGTGGCCATTGGAGACACTAACCATGGAAAAGTCATAGGGTTCAATAAATTCACCTTTGGGTGGAGATCTCTGCGGGAGATTTGGTCATATTAATACCACTCCTC | |||||||||
gi|33675156|gb|CF303395.1|CF303395 ABF1--02-C07.g1 ABF3-overexpressing transgenic rice lambda phage cDNA library (ABF1) Oryza sa CACTTCATAGTACAACGAATCT EST sequence (targeted fragment marked with yellow): GCACGAGGCTGTGGATGAAGTTGCTAGAAGCTTGGAAAGAGTTCTACTTACTATGCGGATAACTACTTCTGAACCTAAGGAGCTAGCTTTTGTTGTGGATGGTTGGGCTCTTGAAATCATCCTGTCACGCTACAATGAAGCCTTTACTGAATTAGCAGCTCTTTCAAAAACAGCAATATGCTGCCGGGTTACACCGTCTCAGAAAGCACAGCTTGTAAAGCTTCTAAAATCATGTGACTATCGAACTTTGGCTATTGGAGATGGTGGGAATGATGTCAGGATGATACAACAGGCTGATATTGGTGTAGGAATTAGTGGCAGAGAAGGTCTTCAAGCAGCAAGGGCTGCTGACTATAGCGTTGGCAGTAAGTCTTTCTTATCAAATTGCCCTTCATGTTATCCCCCATTACTTAATGAAGTTTTGTACCTCATCTTACTATGAATCTGGAGCTAAAACTATGAATCTGGTGCCTATCCAGATTCGTAGTACTATGATGTGTCCCATCCAGTACT | |||||||||