| mature miRNA: CAGCCAAGAATGATTTGCCGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73887897|gb|DT490635.1|DT490635 WS02545.B21_I04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I04 3', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GATAAAATCTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCTATTAGAAGGGAAAGGAGCTCTGGAGGACGTTTTGCGAAGAAAAGTGGTGATGATGCTTCCAAGAACACATCTGAAAGAAAGCTCAATGGTTCTGGTCCACTTCGTGCATCTCAGTCAGGGAGTTCATCAGGTTCTGAACCATTCTCCTCTGACTCTGTTGAAACTTTGAAATCCTCTGATGGTCAAAAAGAAGCAAGGGCGTCCCAAGTGCATGACACTTTTGAAGCTTATGGGTATGCAAATAGAGATGGCCATTATCAGAACCACCATGGCTTGCAATCCTCTACATATGGCCTGTACTTGGGTGAAAACAAGGACGGAGACCGTTCACGTGAAAACGAGGATGAAGATCATCCAGGCTGGCAGCTGAGGAAGCAGGCCAAAACGTCTTCTGCCCACCAGTGAACCGTGCATGCTAAGTGGATGCCAGGACTGGAGGGTTGATTCACACAAGTAGAGAAACTTGAATCCTTCCCTTATCTGGCAACCACGCACCTGACAATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTTCATCTTCTTGCTTGTGGCTTGAACAGAGGGAAGAGATGGCGAATCCGTGGTTGGCTTCGTTTGTCGGCCAACGGGTTGCTTGCATCATTATTCTCGTTCTCTCACTTTTTTTCTTTTTCCTGTGTACACACAACTGTCAAGGAAACTCAACTAGAAGTAGTCTGGATAGATTTTAGTCTTATCAGCTCTTTAGTTTAACTTTGAAAATTGAAACTGTCTTGTTCGATCACTTGCAATTCAATGTAGCACTGGTTATTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73873233|gb|DT475971.1|DT475971 WS0128.BR_N04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_N04 5', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): TATATGCAGTTTGTGACCGGCGCTTCATTCTTGGGTGCTGTCTACTCTGACTATCTTGCTTCTGCTGGTAGAAACTTGAATTGCGCTGCTGGCAATGTGGCACCATCCCAGCTTCTCACTTTCGCGAAATCTCAGGTGGATTACATTCTTGGAGACAACCCGAGAGCTACTAGTTACATGGTTGGTTACGGAAACAACTATCCACGACAGGTTCATCACAGGGGTTCTTCAATTGTTTCCTATAAGGTCGACCCTACATTTGTTAGCTGCCGTGGAGGTTATGCCACTTGGTTTAGCAGGAAAGGAAGTGATCCAAATCTCCTCACCGGTGCCATTGTTGGTGGCCCTGATGCCTATGACAATTTTGCTGATGAAAGAGACAATTATGAGCAAACAGAACCTGCTACCTACAACAACGCTCCTCTTCTTG | |||||||||
gi|38575797|gb|CK091472.1|CK091472 F102P04.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F102P04 3', mRNA seque CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): TTTACCAGCTCATCAAGCTGTGGACCTGTGCTGTCTCACTTCTCCAGAAACTATTATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATATGAGCAAAGGATGCACCCCGCAGTTTCACAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTGTTGTCACTTTCTTTTCCTCAGTATTATGTAAAATTAGTGTCGTGTAATCTTGAGAATATCATATCGATCTTTTTGTGAAAAAAAAAAAAAAAAAAAACAACGCGGAG | |||||||||
gi|24063353|gb|BU871829.1|BU871829 Q035A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GAGCAAAGGAAACCCACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCCTTCAGCATTGCTACACTGGAAAAGCTGGAGGCATTATCCATGTTCAACTTGGGAGGAAACTTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTCGGTCTTCGGTTACTTGTTGCATTCATGGTGGTGAGAGTGTTGCATATGTGGTGATGGACTTCATGTTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAGATGGCAAAAACTTGTGCATCTACCTAGTAGAAATTACTCTCGAATGTGGTAATTCCAAATGGTCTGCATTTGAACTTTCATGTGACCTCTTCTTTATGTGTGAGCAAAGGGTTCTTCTACCCTAA | |||||||||
gi|52497152|gb|CV244177.1|CV244177 WS0253.B21_P07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_P07 3', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): TGAGGCGAAGACAGGCACGTGCTAAGGCAGAGCTTGAAAAAAAGGCAGTAAAAGTTAGAAAGCCATATCTACATGAGTCTCGACACCAACATGCTTTGAGAAGGGCAAGAGGTTGTGGTGGCCGTTTTCTCAATACAAAGAAGCTTGATAACAGCGCTACCAATCCCACATCAGAAAAGGGTAGTGGAGATTTGAATTCCTCTGGCGATCTGGAAGAAGGAAAAGGGTCACAGGCTTCCTCCAATGGTCATGGTAATGGCCATGCACTCTCATCAAGATATCATTCATCATCACATGATGGCAGCTTCTTGGGTCAGCAAAAGGAAACCACACACGGGAATAGGGTGTCTAATGGAGCTGTCTCCATTCATTAAACTTCCACCTCGAGTTGTACGGGGCCTTCAGCATTGCTACATTGGTTTGATTATTAACTCCAATAGAGACATCGTTTAATTTCCTTTTTCTCCTGGCTAGTCTTTGTATCTTATGGAAGGGTTTGCCTTCTGCAGGAAAAGCTGGAGGCATTAGCCATGTTCAACTTGGGAGGAAACCTTTCCTGTGCTGTGTTTCTCAGGCAATTCATTCTTGGCTTTAGGTCTTTGGTTACTTGGTGCATTCATGGTGGTGAGAGTGTAGTATATGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTTCATCTCTCTTCTTTTAGTCGCTTCTGTAAAAATGGCAAAAACTTGTGTATCTACCTCGTAGAAATTACTCTCGAACGTAGTAATTCCAAATGGTCTGCATTTTAAGTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887233|gb|DT489971.1|DT489971 WS02543.B21_K24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_K24 3', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): AAGAGAACAACGTGCAAAAGCAGAGGTTGACAAGAAGCTGATAAAAGCTAGAAAGCCATATCTTCATGAATCTCGGCACCGGCATGCTATGAGAAGGGAAAGGAGTTCTGGAGGACGTTTTGCGAAGAAAACTGGTGATGATGCTTCAAAGAACACATCCGAAGGCAAGCTCAATGGTTCTGGTCCGGTCCATGCATCTCAGTCACGGAGTTCATCAGGTTCTGAACTCTTGCCCTCTGACTCTGTTGAAACTTGGAATTCCTCTGAAGGTCAAAAGGAAGCAAGAGAGTCCCAAGTGCATGACACTTTTGAAGCTCATGACTATGTAAATAGAGGTGGCCACTATCAAAAACACAGTGGCTTGCAATCCTCTGCATATGGCTCTTACCTGGGTGACAATGAGGATGGAGACCGTTCAGGTGAAAATGAGGACGAAGACTGTCCAGGCCAGCAACTGGGGAACCAGGCCAAACGAAGGTTTTTTGGCCCACAGTGAACCCAGCATGTTAAGTGGATGCCAAGGTGGAGGGTCCAATTCACGCAAGTAGCGAAACTTGAATCCTCTCTCTTATCAGGCAACCACGCACTTGGCAATATATATTGCCAGGCGGCAAATCATTCTTGGCTTTTTCTTTTTCTTGCTTGTGGCTTGAACAGAGTGAAGGAGATGATGAATCCGTGGTTGGCTTCTTTTGTCTGCCAACGCTTCGCGTGCATCATTATTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCCTTTTTCCTGTGTACATAGAACTGTCAAGGAAACTCAAGTAGAAGTAGTCTCTGGTTAGATTTTAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890025|gb|DT492763.1|DT492763 WS02552.C21_E04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_E04 3', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GGGGCAAACGAATGCCTTATCTTCACGAGTCCCGGCATCTACATGCTATGAGAAGGGCAAGAGGTTGTGGAGGCCGTTTTCTTAACACAAAGAAACCTGACACTACCAATAATACTGCACCTGATAAGCATACCAGCTCTGATGAAACTGTTTCAAGAAACTTTACCAGCTCATCAAGCTCTGGACCTGTGCTGTCTCACTTTTCCAGAAACTCTGATTCGTCAATGAGTAATGATGCGGAAGTAATAGAGTCTCTGTGTCAAATGCACCCTCATCAGACATATCTGAGCAAAGGATGCACCCCGCAGTTTCCCAGGTATCACCTTTCCAAATTTCCTTCACTTTCAGAAAAGATGGTGGGAGAAAGGGATAACAAATTATGGTGAGTGAGTAGGCCTCTCAATTGAAACTTCCAGCACAAGGAGTTGAGGGTCTCTCCAGCATTGTTAATTGTATGAAAGCCCGTTTAGCTGAAAGGTGTGGTGGATTCTACCAAACTCTGAGAAATCAAGGTGCCTCTTCATTGAGTTTGCTTATTCACTCTTGACACGCAGTAAGGATTTGTTGGGCGTATGTCTTTACCGCTCTATGCTTTCTTGCTTGCATCCTGTTGAAGGTGTTTCTTCGATCATTAGGGATTGTTTATAACCATTTAGAAAAAGCTAGAAACATCGACCCTGACTCACTTGGTGAGGAAGACTATATATCGTTGGCAAATCATTCTTGGCTTATTGTTTGTCACTTTCTTTTCTCAGTTTATGTAAAAAGGGTTCGTGTAATCTTGGAATATCATATCGATCTTTTAGAGATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887894|gb|DT490632.1|DT490632 WS02545.B21_I01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_I01 3', mRNA sequence CAGCCAAGAATGATTTGCCGG EST sequence (targeted fragment marked with yellow): GGTTCAAGACATGCAAACACACGCTTCCTCCAATTGCCATGGTAATGGCAATGGACTCTCATCAAGATATCATTCATTATCAGATGATGGCAGCTTCTTGGGTCAGCAGAAGGAAACCACACATGGGAATGGGGTGTCTAATGGGAACGTCTCCATTTATTAAATTTCCACCTTGAGTTGCAAAGCTGGAGGCATCAGCCATGTCCAACTTGGGGGGCGAAACTTTCAGCGTGTGGTGTTTCTCAGGCAATTCATTCTTGGCTTTGGGTCTTTGTTACTTGGTGCATGCTGGTGGTGTGAGTGGAGCATATCATATGTTGTGATGGACTTCATGCTGTCTTCAGACTTGAACTAATTGCATCTCTCTTCTTTTCGTCGCTTCTGTAAATATGGCAAAAACTAGTGTATCTACCTTGCAGGAATTAATCCCAAATGTAGTAATTCCAGTGGTCTGCGTTTGAACTTAACTTTCGTGTGATCATTTCTTTATGTGTGAACAGAGGGTTTACCTCATGTACCCTAAAAAAAAAAAAAAAAAA | |||||||||