| mature miRNA: CAGCCAAGGATGACTTGCCGG species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27248643|gb|BJ566823.1|BJ566823 BJ566823 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm12g17 3', mRNA CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CNTCAAAATTTGACAATTAAAGATGGAGGATCGGGTTGCTGTCCCGTANTCGGGNCACAACCCTGTCCTCGTTGCAACCAAACCCGAAACCTCTGCTCTTATTCCCATTTGGTTGCAACCATTAGGTAACTCATCCTTGGCTATCAATCTTGGAGTTCATCCTTGGCTATCTCTCTATCTGTGTTGGCAAATCATCCTTGGCTTACAAGCATTCTGGCTGCCTCTATCATCCCTGTTACACCCAACAATCTGGGCACTGGTTTGAGGCTCTTCACCCAGAATGCAACCTCTTTTTCATCTTATATATACATACATAATCCTATCTCCAATAATACATATATCATGAAGATCCAGATATTGGGTTCATGATATGATGTTGCAGATTTGCAGAAAAACTTGGTGTGTTGTAAAAGATTGATACAACTTATGTGTGATTTCTGGTATTGTATTTGACATAAATATGGAT | |||||||||
gi|27260748|gb|BJ578920.1|BJ578920 BJ578920 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm39n07 3', mRNA CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAATGGAGGAGGAGCCTGTNTACGTCAACGCGAAACAATATAATGGGATTTTAAGGCGAAGGCGGGTTAGAGCTAAAGCAGAACTTGAAAAGAAAGCCATCAAAGCCAGACGGCCATATCTTCATGAATCTCGCCATCAACATGCACTGAGGAGGGAAAGGGGGTCGGGGGGCCGATTTCTCAATACAAAAAAGCTAAATGATATGAATTCGAAAACAGACGAGCATACGCAATCTGGTGCAACTGCTACAACAAACTCGGGCCACTCATCGGGTTCAGAGCATTTGTGTACGAACAGCGAAGGGCAGTCTGCTGTAAAAGAAATGTGCAGAGCAGACAGCCATGGCTTCCCATCGGTGCATTTTACAGAGTCGAGCGGGAATGAAAAGGGAAGTTTTCGTCATGGTCATCAAAACTGGAGCTTTATGGGAAACCAGGCTCCTCACGGTGCGCCACCCAGCAATTGAAAACTCGTTCCTGTGTAATGGAGGGGTAAGACAATCCATCCCTTCTTACACGGGTCTGGCAATTCATTCTTGGCTTGTTTTACCTATGTGGGCAAGATGGGTAGAAACGAATAGACTCGGGCTGTGTCGGTCAGCCATTTGTTTCTATTGCTTCTTCCCAGTGTTGTAGATATATGCTCTGATATATAGACTGAGAAGTTGTAGTGTGATTATTTTGTGGTTGGCTTACCACAAAAAAGATAGTGGTGTTGAACTTATAGACAACAAAC | |||||||||
gi|74411812|gb|CJ766632.1|CJ766632 CJ766632 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf47n12 3', mRNA sequ CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GACATTCAATTGCTTGCNTCCGAATCTGTACACAGACCCATATTTTATGGGGATGATGGCCTCTTATGGTCAGCCATTGGTTCCTCAGTTTCTTGATATGCAACAAGCTAGGATGCCTTTGCCACTTGAAATGACTCAAGAGCCCGTTTACGTGAATGCCAAGCAGTATCATGGGATCCTCCGGAGGAGAGAGTCACGTGCTAAAGCAGAATCTCAAAAGAAGCTAATAAAAGTTAGAAAGCCGTATCTTCACGAGTCCCGACATCAGCATGCTTTGAAGAGGGCTAGGGGTACTGGAGGGCGTTTTGCAAAGAGATCTGAGACAGCTGCTTCGAAAGAAACAGGCTCTGGTGCAGCTGCCGATGCTTCAAAAACCCATCAAGCAGCAAAGGCGCCCGATCCCCAACTTCCATCGATAAATGGAGGCAGCAGTTACTACGTTGGAGGTTCATCAGGTGGACGGGGGAGTATTGCAACTAACGCAGCATAGGAAGACAACAGAAGTGGAGTTGTTCTCGATCTTAGCTTTTTCAAGCTGGGCGGCAAATCATTCTTGGCTTTGTTATGGTTTAGGAAGGGGGCGGAGTGTTGTTGGCCTTTTAGTTTCTCGCGATTTTCGCTGTGTTCTTCCCTCTGTATAAAGATTGGTAGGATTTAGATTGGGTTGTGTTATGTAGGTAGGAGAGACCATCTAAAGTGTAGGCAGGAAGAGCGTCTACCATTACTGCTTGCATTTTCTTTTCTCACATAGACATAGCTTAAAAGTCCTCCACCTGTGGAGCTGAATTTGAT | |||||||||