miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CAGCCAAGGATGACTTGCCGG
species: Lactuca sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|22239393|gb|BQ853928.1|BQ853928 QGB21N24.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB21N24, mRNA sequence 

CAGCCAAGGATGACTTGCCGG
 |||||||||||| |||||..
TTCGGTTCCTACTCAACGGTT

EST sequence (targeted fragment marked with yellow):
GATGATGAACCGGTTTTTGTGAATGCAAAGCAATATCATGGAATAATAAGACGTAGAAGATCACGTGCTAAGGCAGAAATGGCAAATAAAGTTTTGAAAAATCGTAAGCCATATATGCACCACTCACGTCATCTCCATGCAATGCGTCGACCAAGAGGAAACGGGGGTCGTTTCTTGAACACCAAAAAGGAAAACAACTGCAAAGATGAAAATACCGATCAAGAAAAAGACAAAAACCTTTTAAAGTCTCCTAATTATACAATTTTCATGTCCAATCATCACAACTCCACTTCTCATCGTGAACCAAATAACATGTTCTCAACGGGAGACGTTAAAAGTCTTCCGATTGGAAACCTTTCGGTGGTCTCTTTTTCAGAAATGATGTCCGGGAACACAGCTCCCAGACATAGTTTTGGCATGCATGGCAAATGGGTTGCAGCGACTGGTGGTGGTGATGGTCGCTGCAATTTTACAGTCTAATGTCAGAGATGAGGTCCTGATGTGTTGTATGTATATCAGCATATCGGGACCTCATATCTTTACAACCAGATGAAATATTTGAAATATTTATCTGGTTGTCTTTGGCAACTCATCCTTGGCTTATTGTGTTGAGGTTGTCTCTAACCTTTCTCACGTTGCATTTCATAGTGTGCAATGTTTTGAGAGTTGTTATGAGATGTTCATAGCCTTAATGCATGTTAAAAAAATGAACAAACACT


gi|22236431|gb|BQ850962.1|BQ850962 QGB14A16.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB14A16, mRNA sequence 

CAGCCAAGGATGACTTGCCGG
 ||||||||||||||| || |
CTCGGTTCCTACTGAAGGGAC

EST sequence (targeted fragment marked with yellow):
GGCCGTACTGCGGGTCTCACCCTGAACGCCTCATTCTTAGGGAACTTGAAGTCCATGATCTGGGGGGAGTCAGGCGGGCAACAGTCGCCGCCGGTGGGAGTGCTCTCCCCAGGTCTAAACCCTGAAAGAGGGTTAGTCCCACATTTGGAAATATCCGGGGCGGATATTGGCGCAGCTCCGACAGACGGAACAGACGTCAAGTTCACAGCTCCGGCAAGACCACCGAGACCGAGAAGAACATTCCGGCGATCAAGGTTGTTCAAGGAGTTCTCAGAAGAACCAGCATTGCAAGAGATTTTGTGTTTTAGTGGCTTATTAAGGGCACATTTCTTCGAGAACAACGGCCAAGAAGAGATGACAGGGGAAGTGGTGGTGAAAGAAGAAGAGTAGGTTTTAGTGGTGGCTCCGGCAGCTGTAACTGTTGGTGTGGGAAGAGAAGCCATGAGCTTTTGGTGGTGTCCAATGGTGAGAGCTTCTTCCACCATCAAGAACTTAGGTTCCCGGTATACCATCCTCAAGTTGGGCCCATACAGAGTGTTGGGCCCAACACCGATGGTATACTAGGTGGAACCCACCACATGTTTCGTTGATGAACAGCGAAATAGACTCGGTGAACCAACAACCTGAAATCTGGGGGGGTGTTGGTCCCCAGGGAAGTCATCCTTGGCTC


gi|90519995|gb|DY981853.1|DY981853 CLSS3875.b1_E09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS3875, mRNA sequence 

CAGCCAAGGATGACTTGCCGG
||||||||.|||| |||||.|
GTCGGTTCTTACTAAACGGTC

EST sequence (targeted fragment marked with yellow):
GATTTCTCTCCGATTTCTTTGCCAATTCTAGGGTTCGTTTTTCCTTTTCAACAACACCCTCTGCCGGTAAATCTTACTGGCAAATTGCATCAACTCCATGTCCACTACAGCCATGAGAGCAAATTCACATGATTCATCTTCACAAGAACAATCATTAGACAGGGACACTCAGTCTGATGAAGTTTTAAGTGAAGAAGAAGATGATGTCAGCAAAGAAACACATAACAATGTGTCATATTTTCCTTCAGATACATGTGCACAAGAGCACCAAAATTTTCAGCATGACATACTTCCAAGAAATGAAGAAACCCTTTCACAGCCACCACAACTTGAACTTGTCAATCAATCAGTTGCTCCTTATTATGATCCGTATTATGGTGGGATGATGGCAGCAGCTTATGGTCAACATTTTGTTCATCCTCAGTTTGTTGATGTGCAACAAGTGAGGATGCCATTGCCACTTGAAATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATATCATGCAATTTTGAGGCGAAGACAATCACGTGCTAAAGCTGAGCTTGAAAAGAAACTTATAAAAGATAGAAAGCCTTATCTTCATGAATCCCGGCATCAACACGCGATGAGAAGAGTGAGAAGTTCCGGTGGTCGATTTGCAAAGAAAACCGAAACCGATGCTTTAAAAAATACAAGTGATGACGTGGCAACAGGTATGAAGCGCATGCACTCAGAGCCAGCTGTAAGTTTCGGGACCCACACCAACCAAGAAACAAGGGGTGGCGGAATGGTAAATTCATGNCATGGTGGGGCCCTCAGGTATGAAAACCAAGATGGGTTTCAGGAGGGAGGTTCTTTANGGGCAGCATGGTCAACAATACCTTCTAGTCAAATTCACAGAGGGCAGTTGCCATGAAATGAAATGATATGATATGTCGTATGATTTGGCTGGCAAATCATTCTTGGCTGTTTT


gi|90520830|gb|DY982688.1|DY982688 CLSS5012.b1_G05.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS5012, mRNA sequence 

CAGCCAAGGATGACTTGCCGG
||||||||.|||| |||||.|
GTCGGTTCTTACTAAACGGTC

EST sequence (targeted fragment marked with yellow):
GTCGTTTTTCCTTTTCACAACACCCTCTGCCGGTAAATCTTACTGGCAAATTGCATCAACTCCATGTCCACTACAGCCATGAGAGCAAATTCACATGATTCATCTTCACAAGAACAATCATTAGACAGGGACACTCAGTCTGATGAAGTTTTAAGTGAAGAAGAAGATGATGTCAGCAAAGAAACACATAACAATGTGTCATATTTTCCTTCAGATACATGTGCACAAGAGCACCAAAATTTTCAGCATGACATACTTCCAAGAAATGAAGAAACCCTTTCACAGCCACCACAACTTGAACTTGTCAACCAATCAGTTGCTCCTTATTATGATCCGTATTATGGTGGGATGATGGCAGCAGCTTATGGTCAACATTTTGTTCATCCTCAGTTTGTTGATGTGCAACAAGTGAGGATGCCATTGCCACTTGAAATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATATCATGCAATTTTGAGGCGAAGACAATCACGTGCTAAAGCTGAGCTTGAAAAGAAACTTATAAAAGATAGAAAGCCTTATCTTCATGAATCCCGGCATCAACACGCGATGAGAAGAGTGAGAAGTTCCGGTGGTCGATTTGCAAAGAAAACCGAAACCGATGCTTTAAAAAATACAAGTGATGACGTGGCAACAGGTATGAAGCGCGTGCACTCAGAGCCAGCTGTAAGTTTCGGGACCCACACCAACCAAGAAACAAGGGGTGGCGGAATGGTAAATTCATGCAATGGTGGGGCCCTCAGGTATGAAAACCAAGATGGGTTTCAGGAGGGAGGTTCTTTAGGGCAGCAATGGTCAACAATACCTTCTAGTCAAAATCACAGAGGGCAGTTGCCGTGAAATGAAATGATATGATATATCGTATGATTTGGCTGGCAAATCATTCTTGGCTGTTTTTATGTGG