| mature miRNA: CAGCCAAGGATGACTTGCCGG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7217600|gb|AW563722.1|AW563722 LG1_248_E06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): GCCGTACCTGCACGAGTCTCGGCATCTGCACGCGATGAAGAGAGCTCGGGGAACAGGCGGGCGGTTCCTGAACACAAAGCAGCAGCCAGAGTCCCCCGGCAGCGGAAGCGGCGGCGGCTCCTCGGACGCGCAACGCATGCCCATGAACGGTGGTGGCCTGTTCACGAAGCACGAGCACAGCTTGCCTCCCGGCGATCGCCACCACTATCACGCGAGAGGAGGGGGCGGCGCGTAGGGAGCCAGCCCCCCCAACTGGCAACTCATCCTTGGCTTATCAGCGATTTCCACTCGGCTCTTGTCTAAACTGAACTGAACTCGGGGTTTCTGTCTCTGCATCTGTAACTAAACTAGTAGGTGTGTCCGAATTGGCGGGTCGCTCTGTTGTACTAGTACCTGGGACGCGCACTAGAGAGTGGAGGTGATGCGGGTGCGGAAAGAATGCTGTTCTTTGGTGACGTAAGCTGGACTTACGTTGTGTGTGTGTGTGTGTGTGTGAGTGTGACTAGGGCGAAACTGCCAAACTGGCGCCTGTTTCATGTAACCTTTGCTCCAGGACGATGACTGGTATAATAAGTAGCAGTAATAACCATTTTCTCTGTC | |||||||||
gi|34446612|gb|CF433911.1|CF433911 NIT1_31_E09.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_31_E09_A002 CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): ATATACAGTAATCTATTCTCACATTAACTTTCTCCCCTTTATGGATTCTTTTGATGAAGAATTATCACTTATTTTTATTTTTATTTGATTGAAATTAAGTGGATGCAGTGAAAAAGAATAAGTTGAACTAGGCTACTATTTTAATCTACTAATCAATTCTATGTAGATTCAAGATAATACAATAGAAATGAATCTAAAGTGTTGTAGAGGAAACTATATGTAGTTCCAACCACATCCTTTTATTTAAGACTTGGATTTTTATTTTCTGTAATCCCACTTTTAATTTCTTCAATGATTAGTTGCAATTCCGGTTAATCATTTTTGGCTGGCACTGGCTGCTTTTGCATAAATAATAGGGGGGAGCCTCCACTCTGGCACTGCGAATGGGGCGAGGAGCTCTGCATCACAGGAGCACCGCGGAATCAGCCTCCTTAGCATCTCCACCCACCCTTTCCCCCCATTTCAACAACTCGTACAGTAACATCTCAGCGGCGCGCCGTCACATCCCAGCTCCGTGCGCGCCGTCAGAGGCAATCGGACGAACAGCTTGCGTAGACGCTCACTGACGGAATAACAGTCGCAGAACAGAGAAGGGGGCTGGAACACGAGCGTGTGCTCACCGAGAGTGGCGGGCGTGT | |||||||||
gi|14513763|gb|BI075106.1|BI075106 IP1_19_F11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CTCCACGACCACCAGGGCTCAGCAACATTAGCAACCCGCACTTCCACTCCCAGAGTAGCGTCTCCAGCTTGTCTGGCTCCGATGTGTCAAACATCTACGGCGGCTTGGAGCAGCCCCCTCGGGCGCCACCCTTCTTCACCGTGCTGCCACCCATCATGGACGGCGACCATGGTGGCGTCACCCACATCTCTTCCTTCAAGTGGGCAGCCAGCGACAGCTGCTGCGAGCTCCTCAAGGCATGAACCGAGGAGGAGGGGATGGCTACTCAGACAAACGGCCTTCTCCCCGATGGCTGGTAGTCTGTAGGCAAATCATTCTTGGCTGTTCTGCATTGGGGTGCAACCTCCACATCATCTACCTACCTACCCACCCCCTGTCCCTGAAATTCCACAGTGCTTTGGGTTACAGGGGTCTTGTGTGATGATGTGGCTCCCCCACATGCCTTTGCTGTAACATATTGTACCCAAACCACTGCTACTTGGTACTTCTCGGTATCATTGTCTCAGTATGGATTCTCCGTTGTCACAGTGTTTGAATAATTGAGGCGTCAGACTTCAGGGTT | |||||||||
gi|18067500|gb|BM328363.1|BM328363 PIC1_28_D07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): AAAAAGGTGGTCAAAGCCAGAAAGCCATACCTTCATGAGTCTCGTCATCAGCACGCGATGAGGAGGGCAAGAGGAAATGGGGGACGCTTCCTAAACACAAAGAAAAGTGACAATGGTACTCCCAATGGTAGAGCTGAGCCTAAGAAAGGAGATGGTAACTCCGAGCATCTCCATGTCCCTCCTGACTTACTACAGCTACGACAGAACGGGGCTTGAAGTAGCGTTCTGGCTCTGGCATCCTAGAACAGCAGTTTCTGCCCACAGGCATAGGCATTTGAAACCGGACTCGTAGCTCCACAGTATGCGCAGCCATATCTGCGGTAACGCTCGTTCACCTGAATGAGCTTTGTACCGAGGTAGGCATGCAATGCAATCTGGGCGCAGGAGTCCATCAGGTGTCCAATGCCATATGGGTGTATGCTGTTTCAGGCAATTCATTCTTGGCTTTCACGTTCCACCACCCATGTGTAGCGCTAGTGTGTTGTAAGTGAAACTAAGCTTGTGCTCTGTATTGGGCCGTTCGGCGAAACTGTGAAACATCTGTATAATTAAGATCGAACTCTGGATTAACTCGGTAGTGCTTTGTCTGGTTTTTCTTTT | |||||||||
gi|6673990|gb|AW284251.1|AW284251 LG1_268_F03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CAGCCAAGGATGACTTGCCGG EST sequence (targeted fragment marked with yellow): CCAAATGCTAGGAGCTGGTGACTGCTGGCAGTTCCCAGCTCCAGGGTCCGGGATTGCCCCTCCCATCGTTTGGCTCCCGGTAGGCAAATCATTCTTGGCTGAAGGCATTGTTGAGCGTTCCACTCATGCCGCCTAGTTCTCCTAGAAACTCTGAAACCTAGTTTCTGGGATCCTGTGGTGAGTGGAACATTCCTTTGCCTCAAAAAACAAAACAAAAAAAAAGTTGGTTGTACTATCGACCAACTTCTAAATGGTTTCACCTTATTAGCTTTCAGAATAATAAAGCCTGATACTTCGGACTCGTCTGAAGTTTCAGAGGTACTGGAATTGTGCTATGTGTGAGTCTGTTAAAGCGTCAAGAACTACGGATTTGTTGGTGATGAATTGTAGTGTGCTTGAAGCTTATGTGGACTTGATTCGTACTTTTGTGGTGTGCTGAAAACTTAAACTCGGTAATGTAATGAAACTCGGGCTTGGTTTGT | |||||||||