| mature miRNA: CAGCCCTTCTGCTATCCACAA species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225909155|gb|GO361781.1|GO361781 GQ03219.B7P1_J08 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03219_J08 CAGCCCTTCTGCTATCCACAA EST sequence (targeted fragment marked with yellow): CCTTGATGAAAACTGAGAGACATCTTTTTCAGAGTCTCTATCTTTGATCAGGAGATTTATCAACCACTAAGATGGTAGCTATAATGTTTTAGAGAAATTGGTACAAATGTGGATTGCAGAAGGGCTAGTTAGGAACCAATGTACAATAAATTGTTTCTAAATTGTTTATTTTATTCAGATGCGTAAAACAATTTGAGTCTCTAAGACTGCCTGAGCTTTACATTAAGTGGGCTCTACATCAGGGATTTGCCTAGACATATGCTATGTCTATGCGAGCGCGCTTAAAAATGTCAAGTATTTCCGAACGAACTTGATTGAGCAGACTAGTCCTCAATAACTGTGGAAGCCAATGCACAAAGCAGTGTTTGGAGTGTGAGGGGTCTCATAAATCTCAGTGAGCTGGCTGAGAAATTGAAGGGGCATAATGGAAACCTGGTTGGAGACCAGGCATTTATGGGTGTCTACACTGTATTCTCAAGACACTTGCAAGTTTGGGCATCTTAAAATTGTAACATTTTATAACTGTTTGTATCTAAAAGTGGCTCTCTCTGTTACAGTGGTCGCCAAATTTGAAGTTGCCAAAATTGCAAGCCTGGAATAATTTGAGGGCATAGGTTGCCATCCAATTTGAGCATATTATTCGGCCAAATAGATTGGTGGCTGAAGATGATGACATTAAAATATTCCTTGATAAATTACCTAAGAATGACAAGTACGTGCGTGATTTATTTACTGAATGTCTCACTCAATTTTTGTCATAAATGTGATGGTGATTAATGAATGCCACAGGGCCTG | |||||||||
gi|238891982|gb|GR222501.1|GR222501 GQ02825.SP6.r_F14 GQ028 - Cambium / phloem scrappings (Normalized library ) Picea glauca cDN CAGCCCTTCTGCTATCCACAA EST sequence (targeted fragment marked with yellow): TGTGGATCGCAGAAGGGCTAGTTAAGAACAAATGGGCACCCTAGTTAGGAACAAATGGGCACCCCATTTAATGAGTATGGCTATTGGATTCACCTATTTAAAACTTTTACTAAATCTTTGTTTATTCAGATGCCTAAAGCTTGTTAGTGTCATAAGAGGTTCCATCAAGATATCTATTCCGTTTGAGATCTCTCCGGTTTTAGATCTGGCCTACACTGAAATAATTTCAGTCCCAACATCAGGCAATTAAGGCTGCTTGAGTTTTACATGAAGTGGGCTATACAACAGGAATTTGCCTCGGGACATAACCTATGCCTATGTGAGCGCTTAAAAATGTCAAGTATCTCCGAACTTGATTGAGCAGACTCTCAGTTAGAGCAAAGTCCTCGTAAGTCAAAGTGAGCTGGCTGTAACTGTAGAATTGCCTGAAATAAGGTCAGAAATTAAAGGGGGCATGGCATTTACGGTTGTCTACACTGTATTGTGAGGACACGCAGAACGTGAAGAAGCTATAGATTTCATGTTCAGTCCGTCTAATTACACTTGCGAGTTTGAGCATCTTAAAATTGTAACATTTTATAACTGTTGGTATCTAGAAGTAGCTATCTGTTGGAGAGGTTGCCAAATTTGAATTTTCCAAAGTTGCAAGCCTGGAATAATTTGAGGGCATATGTTGCCATCCAATTTGAGCATATTATTCGGCCAAATAGATGGGTGGCTAAGCATATATTGTGAAGATATTAAAATATTCCTTGGAAACTTACCTAAGAATGGCAAATAAGTGCGTTGTTTATTTCAAAAAA | |||||||||
gi|270051273|gb|GT739013.1|GT739013 GQ03126.B7P4_K04 GQ031 - Xylem Scrapings (Normalized library) Picea glauca cDNA clone GQ0312 CAGCCCTTCTGCTATCCACAA EST sequence (targeted fragment marked with yellow): ACATGATCTCAAGTAGAATGTACTACAAAAAGAAAAAGATCTTCTCAAAGCGAATGCCCTTAAGGTTGCACATGTTGATGGACTTATGGTTGATGTATGGTGGAGAATTGTGGAGGCAGAAGGACTGAAGAAATATGATTGGTCTGCCTACAGAACCTTATTCAGTATTATCCAGGAACATGGCAATAAACTACAAGCAATCACGTCCTTCCATCAATGTATAGTATGCTTGCTTTTCACTGTTGTCAGGCTACATTCTCGATAAAAGCATTTGTTACACATTTTTTATTTGAATTTTGCCTACATATATTGCATCACAAAATCGATTACACGTTAAAAAA | |||||||||
gi|225909600|gb|GO361822.1|GO361822 GQ03219.SP6.r_J08 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03219_J08 CAGCCCTTCTGCTATCCACAA EST sequence (targeted fragment marked with yellow): GAGAAATTGGTACAAATGTGGATTGCAGAAGGGCTAGTTAGGAACCAATGTACAATAAATTGTTTCTAAATTGTTTATTTTATTCAGATGCGTAAAACAATTTGAGTCTCTAAGACTGCTTGAGCTTTACATTAAGTGGGCTCTACATCAGGGATTTGCCTAGACATATGCTATGTCTATGCGAGCGCGCTTAAAAATGTCAAGTATTTCCGAACGAACTTGATTGAGCAGACTAGTCCTCAATAACTGTGGAAGCCAATGCACAAAGCAGTGTTTGGAGTGTGAGGGGTCTCATAAATCTCAGTGAGCTGGCTGAGAAATTGAAGGGGCATAATGGAAACCTGGTTGGAGACCAGGCATTTATGGGTGTCTACACTGTATTCTCAAGACACTTGCAAGTTTGGGCATCTTAAAATTGTAACATTTTATAACTGTTTGTATCTAAAAGTGGCTCTCTCTGTTACAGTGGTCGCCAAATTTGAAGTTGCCAAAATTGCAAGCCTGGAATAATTTGAGGGCATAGGTTGCCATCCAATTTGAGCATATTATTCGGCCAAATAGATTGGTGGCTGAAGATGATGACATTAAAATATTCCTTGATAAATTACCTAAGAATGACAAGTACGTGCGTGATTTATTTACTGAATGTCTCACTCAATTTTTGTCATAAATGTGATGGTGATTAATGAATGCCACAGGGCCTGAAATTTCCCTCAGGAATTAGAGATTCAGTGAAACACGAAGTCTCCCACTTAGTCCATTGACAGAGTGGAAGAGTTTTTTTGTAAGGTATGTCTCCTGTACAGATTTTAAGCAAAAAA | |||||||||
gi|238890934|gb|GR222347.1|GR222347 GQ01302.T24.r_P04 GQ013 - Elongating ROOTS tips - sapplings Picea glauca cDNA clone GQ01302_ CAGCCCTTCTGCTATCCACAA EST sequence (targeted fragment marked with yellow): AGGCATGATGTAACAGTGTAAAAATATGGGAGCTGCAGAGACCTTGATAACAATGGGGCAATTTGATGGAATATGATAATTGGCAGTGGTTTGGTCATCAAGCTTTTCCATATAATAATGGAAATCTGTCAATAAACATAGATGAGAAATAAGCCAAACTTTTGGTCAACAAGTGTGGAGGGATTCTGCTTTCAATCAAAGTTTTAGGAAGGATCATGCCAGAGACTACCCATCTACAAGAGTGGGAAATGGAAGTCTGGTGGCTGCCAGATGCCCACAACAATGATCACCAATCATTTTCATCTCTTTGTTTTTCTTAGAGTTGAGCTGCACTTGGCAACTGCAACATTGTTCTGCAATTGCGTTTTCTATAGGTAGCTGCTTCCTTAGTTGTCAGTGAAATTGTTTATTCTGAATTTGGTGTGATTCCGTTGTGGATAACAGAAGGGTTGTTTGCAAGGAAGAACAGCTACAAGAATATTAGCCTCCAGGCTACAGCCCATTCGAGATTGGAAGCATTTACTTGGACCTTTTAGCCTGACGCTGAGAGGTCACCCATAAAAAGCTACCGGCATCTCTTATAAATCTGGTAAAGCTTCCAAATCCTAGCTTTTAATAGGTCCAGCATCAGAGAATTATCCTTTGGTTTTCATAAGTTGAGATCTGTGCCTTTTAAGGCAGTCAAATGTGTATTCTTATCTCACACTTGAATGTAAAGATTTTTTTTTTGGAAATAATTTCA | |||||||||