| mature miRNA: CAGGTATCAGGTGTCAGGTAT species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16430550|gb|BI995776.1|BI995776 1031030A09.x2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei CAGGTATCAGGTGTCAGGTAT EST sequence (targeted fragment marked with yellow): TTTTTTAGCCAGATACTGTAACAGGTGCCAAGATCGGTGCAGAGGTGCAGTGGATATTGTCGGGTGCTTGCAACAGCTAGCGCCCAGCTCCATCCGGCTTTGTACCGCTCCACACGGTTTATGTTAACCGAGATTGTTTGTGCGAGCAGTTCAACTCCTGCTCAACCATGCGGTAAGCACTGCCGGCAAGATACTCAGGCGTGCATGGTGCAGTACTTCTGCTGCTGCAATGCTTGACACCTGCTACCTGCTAGCCGCCTGCCCGCCGCCTGCCAACCCTCTATTCGAAACCCACACAAC | |||||||||
gi|15696302|gb|BI720607.1|BI720607 1031050H09.x1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei CAGGTATCAGGTGTCAGGTAT EST sequence (targeted fragment marked with yellow): TTTTTTAGCCAGATACTGTAACAGGGGCCAAGATCGGGGCAAAGGGGCAGGGGATATTGTCGGGTGCTTGCAACAGCTAGCGCCCAGCTCCATCCGGTTTTGTACCGCTCCACAAGGTTTATGTTAACCGAAATTGTTTGGGCGAGCAGTTCAACTCCTGCTCAACCATGCGGTAAGCACTGCCGGCAAGATACTCAGGCGTGCATGGGGCAGTACTTTTGCTGCTGCAATGCTTGACACCTGCTACCTGGTAGCCGCCTGCCCGCCGCCTGCCAACCCCTTATTTGAAACCCACACAACTTTTTGCATCACTCCGTAGGCCCCAGCCTGGCCCGGTTGTTTAATCCCATGCCGGGGGGTTAGATGGCCTCCGCAGCACCTGACCGCATCCCTGAAAAAAACCACATTCCTTGACCACAGAAACAGCCCA | |||||||||
gi|16432396|gb|BI997622.1|BI997622 1031050H09.x2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei CAGGTATCAGGTGTCAGGTAT EST sequence (targeted fragment marked with yellow): TTTTTTAGCCAGATACTGTAACAGGTGCCAAGATCGGGGCAAAGGTGCAGTGGATATTGTCGGGTGCTTGCAACAGCTAGCGCCCAGCTCCATCCGGCTTTGTACCGCTCCACACGGTTTATGTTAACCGAGATTGTTTGTGCGAGCAGTTCAACTCCTGCTCAACCATGCGGTAAGCACTGCCGGCAAGATACTCAGGCGTGCATGGGGCAGTACTTCTGCTGCTGCAATGCTTGACACCTGCTACCTGCTAGCCGCCTGCCCGCCGCCTGCCAACCCCTTATTTGAAACCCACACAACTTTTTGCATCACTCCGTAGGCCCCAGCCTGGCCCGGCTGCTTCATCCCATGCCGGCGGGTTAGATGGCCTCCGCAGCACCTGACCGCATCCCTGAAAAGAACCACATTCCTTGACCACAGAAACA | |||||||||