| mature miRNA: CAGGTGTTCGACGAAATGCGA species: Centaurea solstitialis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|124672754|gb|EH767494.1|EH767494 CNSM13703.b1_M18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM13703 CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): GGCGGGGGAGCTACAGAATATACTACATGTTTTCTTAAGCGGCATTACGTCGAACACTTGGCAGGCTCACAACCCCAATCACTCGCCGGAGAATCATGGCCGGCGTTCTCAACTTCACGGCGTTACCACCGCTTTCTAGACCTCTTTGGCGTCACCACAAACCAAAAATGTCAACTAGTAGCAGTAGTAGGGTTTCTGTAATAAGATCGTCGACAGAAGTTACCGATACATCTTCTACTACTCCTTCTATTTCAGTTATCACTCCTCCGTCCAATTTCACACCTCCTGAGCCCAAGCGTTTTGCGGTTAGGCCGGATAAGGTTATGGAAGTCGTTACTGCTAGTCTCAACCTGTTGTTTCGATTTGGGACTGGTGTTTTTGTTGATGGGTATTCAGTTTCTTTTGTGCCCAAAAATGAGTATCCAACTGGCCAGTATGGTCTTGAAGTTTCTGGTTACATTGCAAAAGAAAGCTCAAAACTAGGCCCCCGACCGGAAAAGCCTATTGAGATATACGAGTTTGAAGGCTGCCCTTTCTGTCGGAAGGTGAGGGAAATGGTTGCAGTGCTGGATCTTGATGTATTATATTATCCTTGCCCAAGAAATGGGCCAAATTTTCGTCCCAAGGTTGGCCAGATGGGTGGGAAACAGATGTTTCCTTACATGGTAGATCCAAACACAGGAGTTTCAATGTACGAATCAGATGATATTATAAAGTATCTTGCCCAGAAATATGGAGATGGGACCGTGCCATTATCTTTGTCACTTGGTCTGTTGACAACTTTG | |||||||||
gi|124685069|gb|EH779809.1|EH779809 CNSS18644.b1_G06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS18644 CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): TTGGCGGGGGACCTCTGGACGGTATCGGAAGTCAAGCAGGAGCGCGTGTCTTAAACAAGCACTCACCCTTTGAATTCATTCTCGTAGGCATTTCGTCGAACACCTTCTAGGCACCAAACCAAAACCAACCATTTGCATCGATCCAAATTTCATCTTATTATCATTCATCCTTCTGGATCATTAGCTTTCCAATGATTCTTTGCAAACGGTGAACAATAACAACAATAAGAATAATCTAGCTATGGCGTTATCGAGGTCCTTCATACAGCGTGTGTCTCCATTTTTCGCAGCTCGAATTCGTCAAAACTCCAGCCTACTTAGCTCTGCATCATCTTCCGCCCTTGCTAAAGAGCCTCAATCGTCGTCCGTATCTCCGCCGGAAGGAGATACCGTTCGTCTGTCTGATAATTGCATCCGGAGAATGAAAGAATTACAAAATGATGAAACCAAGGAAAAAATGCTTCGATTGAGTATAGAGGCTGGTGGATGCTCTGGATTCCAATACAACTTTGAACTTGAAGAGAAACCTAAAGACGACGACAGAATTTTTGAGAGAGATGGCGTTAAGTTAGTGGTTGACACAATATCATTAGGTTTTGTAAAAGGTGCAACTGTTGACTATGTTGAAGAGCTAATCCGTTCTGGATTTCAGGTAGCCGAAAATCCAAGTGCAGTGNGTGGTTGTAGCTGTAAAAGTTCATTCATGGTGAAATAGTGTAAGTCTGTTATGTATGCATAGATACCATACCACAAACATACTTGGCTCATCCTCACTTTTG | |||||||||
gi|124660224|gb|EH754968.1|EH754968 CNSL14105.b1_A24.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL14105 CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): AAAAAATGAATCTTTTCCCACTCTCGCCCTCTTCTTCCTCCTTCTATCTTCTTCTTCTTCTGCACAAAATTCCACGTCTTGTCCGATGAATTTCGACTACGTCCTACGAATCCCATGGCCGACCACCAACTGCCGCCACTCCGACGCCTCTGCCAACCCGGTCGCCAACTCCACCTCTTGCTGTCGAACCCTGCTCAGCGTCTACGGCATCGCCTTAGCACAACACCTTAAACAAACCTCCCTCTTCCACCTCTCCGATCTCGCAACCTCCTCGGCCTGTCTCGCCGATTTCCAGACCCAGCTCGACTCCCTTTCCCTCCCCACCAACCTCGCTACCTTCTGTTTCGACCCCAGTCAGTTTGTCATTTCGTCGAGCACCTGCTCTGCAATCCGGAGCGTTCAAGATTGGCGTCGGAAGTTGGGGAATCAAACGGTTCTTGATTCCGCCTGTCGAGACGATCTCACGGACCTTCCCAACTGTGATGATTGTTTGAGGGCTGGGTTACGGGTTCACGCCGAATTGGCCGCCATTGATGGTAACGCTTCCCATTCCAACGAGTGTTTTTACTTTGTTGTTCTTTATGCTGCTGGTGTTATCAATAAGTTCGGGCCCAAAAGCGACGGTGCTGTTTCGTGTGCCTTTGGGATCAACATTTTGCCCAAAACCCGGAAAACTAACAAGAATTCTTCGTTGGTGTTTGGATTGATTGGAGGGCTTGTTGCGATTGTGGTCATCTCTTGTTTAGTTGGGTTCTACTTTTG | |||||||||
gi|124668974|gb|EH763714.1|EH763714 CNSL9718.b1_L05.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL9718, CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): CGCGGGGAGCAATGACCTCTGGACGGTATCGGAAGTCAAGCAGGAGCGCGTGTCTTAAACAGCACTCACCCTTTGAATTCATTCTCGTAGGCATTTCGTCGAACACCTTCATAGGCACCAAACCAAAACCAACCATTTGCATCGATCCAAATTTCATCTTATTATCATTCATCCGTCTGGATCATTAACTTTCCAATGATTCTTTGCAAACGGTGAACAATATCAACTATAAGAATAATCCAGCTATGGCGTTATCGAGGTCCTTCATACAGCGTGTGTCTCCATTTTTCGCAGCTCGAATTCGTCAAAACTCCAGCCTACTTAGCTCTGCATCATCTTCCGCCCTTGCTAAAGAGCCTCAATCGTCGTCCGTATCTCCGCCGGAAGGAGATACCGTTCGTCTGTCTGATAATTGCATCCGGAGAATGAAAGAATTACAAAATGATGAAACCAAGGAAAAAATGCTTCGATTGAGTATAGAGGCTGGTGGATGCTCTGGATTCCAATACAACTTTGAACTTGAAGAGAAACCTAAAGACGATGACAGAATTTTTGAGAGACATGGCGTTAAGTTAGTGGTTGACACAATATCATTAGATTTTGTAAAACGCGCAACTGTTGACTATGTTGAAGAGCTAATCCGCTCTGGATTTCAGGTAGCCGAAAATCCAAGTGCAGTGCGTGGTTGTAGCTGTAAAAGTTCATTCATGGTGAAACAGTGTAAGTCTGTTATGTATGCATAGATACCATACCACAACAATACTTGGCTCATCCTCACTGTTGCAATTGTTATTCAGATGTGATTAGCATACTGGTTTCTATGTTAGAAGTACATGGTAGCATTTG | |||||||||
gi|124668144|gb|EH762884.1|EH762884 CNSL8886.b1_K13.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL8886, CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): AAAGAAACAGACTGGAAACCGACGTCGTTTTCTCTTTGAAGCATTTCGTCGAACACCTGGATGGCAAGCAGCAGCAGCAACAGAGACGAACCTCTGACCTTCTTGAACGCATCCACCTCTTCTTCAGCGGTCGTCTCAGAAGGAGGCGACAGTTCTCAGATTGGCAGCGCTTCTGGAAGCTTCCAGAACGAAGGATTCCTCGGCGGATTTGACGGCGGCGATGAAGACTCCGGATTCTCGCGATCTGAGTTCCGGCAGAGCCTTCTTGTCGGAACCGTCAAGTACTACGAACGCCATGTGTTTTTGTGCTACAAGAAGCCGCAGGTGTGGCCGCCGAGGATCGAAGCTGCTGAGTTTGATCGGTTGCCGAGGCTGTTGTCGGCTGCTCTTACCTCCCGGAAGAGTGATATGAAGAGGCAGACCCGCCTGACTATATGTGAGGGACAAGATGGAACCGAGACATCAAATGGAGACGTCTTAATCTTTCCAGACATGATCAGATACAGACGGCTGACGCATTTTGACGTGGACACATTTGTGGAAGAAGTTCTGGTAAAAGACGGTGAATGGCTGCCTGGAAGTCCTGAAGCACTTAGAGGATCGTACATTTTTGTATGTGCTCATGGTGCAAGGGACAAAAGATGTGGCGTTTGTGGGCCCGCACTCGTTTCTAGATTTAAAGACGAAATAGAATTGCGTGGTCACCAAAGTGAAGTGTCAGTTCGGCCATGCTCGCACATTGGGGGCCACAAGTATGCGGGAAATGTGATTATATTTGGATCAAACAACCATGG | |||||||||
gi|124683500|gb|EH778240.1|EH778240 CNSS17067.b1_F19.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS17067 CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): GGCGGGGCCCTCTGGACGGTATCGGAGTAAGCCAGAGCGCGTGTCTTAACAAGCACTCACCCTTTGAATCCATTCTCGTAGGCATTTCGTCGAACACCTTCTAGGCACCAAACCAAAACCAACCATTTGCATCGATCCAATTTCATCATCTTATTATTCATCCCTCTGGATCATTAGCTTTCCAATGATTCTTTGCAAACGGTGAACAATAACAACAATAAGAATAATAATCTAGCTATGGCGTTATCGAGGTCCTTCATACAGCGTGTGTTTCCATTTTTCGCAGCTCGAATTCGTCAAAACTCCAGCCTACTTAGCTCTGCATCATCGTCTTCCGCCCTTGCTAAAGAGCCTCAATCGTCGTCCGTATCTCCGCCGGAAGGAGATGCCGTTCGCTTGTCTGATAATTGCATCCGGAGAATGAAAGAATTACAAAATGATGAAACCAAGGAGAAAATGCTTCGATTGAGTATAGAGGCTGGTGGATGCTCTGGATTCCAATACAACTTTGAACTTGAAGAGAAACCTAAAGATGATGACAGAATTTTTGAGAGAGATGGCGTTAAGTTAGTGGTTGACACAATATCATTAGGTTTTGTAAAAGGTGCAACTGTTGACTATGTTGAAGAGCTAATCCGTTCTGGATTTCAGGTAGCCGAAAATCCAAGTGCAGTGGGTGGTTGTAGCTGTAAAAGTTCATTCATGGTGAAATAGTGTAAGTCTGTTATGTATGCATAGATACCATACCACAACAATACTTGGGTCATCCTCACTTTTGCAATTGTT | |||||||||
gi|124671214|gb|EH765954.1|EH765954 CNSM12293.b1_I01.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM12293 CAGGTGTTCGACGAAATGCGA EST sequence (targeted fragment marked with yellow): TACATGTTTTCTTAGCGGCATTACGTCGAACACTTGGCAGGCTCACAACCCCAATCACTCGCCGGAGAATCATGGCCGGCGTTCTCAACTTCACGGCGTTACCACCGCTTTCTAGACCTCTTTGGCGTCACCACAAACCAAAAATGTCAACTAGTAGCAGTAGTAGGGTTTCTGTAATAAGATCGTCGACAGAAGTTACCGATACATCTTCTACTACTCCTTCTATTTCAGTTATCACTCCTCCGTCCAATTTCACACCTCCTGAGCCCAAGCGTTTTGCGGTTAGGCCGGATAAGGTTATGGAAGTCGTTACTGCTAGTCTCAACCTGTTGTTTCGATTTGGGACTGGTGTTTTTGTTGATGGGTATTCAGTTTCTTTTGTGCCCAAAAATGAGTATCCAACTGGCCAGTATGGTCTTGAAGTTTCTGGTTACATTGCAAAAGAAAGCTCAAAACTAGGCCCCCGACCGGAAAAGCCTATTGAGATATACGAGTTTGAAGGCTGCCCTTCCTGTCGGAAGGTGAGGGAAATGGTTGCAGTGCTGGATCTTGATGTATTATATTATCCTTGCCCAAGAAATGGGCCAAATTTTCGTCCCAAGGTTGGCCAGATGGGTGGGAAACAGATGTTTCCTTACATGGTAGATCCAAACACAGGAGTTTCAATGTACGAATCAGATGACATTATAAAGTATCTTGCCCAGAAATATGGAGATGGAACCGTGCCATTATCTTTGTCACTTGGTCTGTTGACAACTTTGACCGCAGGTTTTGCCATGATTGGTC | |||||||||