| mature miRNA: CAGTTTTCGCTGCCCATTTCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52505521|gb|CV252546.1|CV252546 PX0015.B21_D02 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_D02 3', mRNA sequence CAGTTTTCGCTGCCCATTTCT EST sequence (targeted fragment marked with yellow): CAGTTGGGTCCTCCCTTGTGAGGGAAGACAAACTTGATCTTGCAACTTCACTTATTGAGAAGGCCAAGGTCAAGGGGGTAAAACTGCTGCTGCCTGCAGATGTGCTTGTTGCTGACAAGTTTGCTCCAGATGCCAACAGCAAGGTGGTGCCAGCTTCTGAGATACCAGATGGTTGGATGGGTTTGGACATAGGACCTGATTCCATCAAGACATTCAGCGAGGCATTGGATACAACCAAGACCATTATTTGGAATGGACCAATGGGTGTCTTTGAGTTCGAGAAGTTTGCAGCGGGAACTGAGGCAATTGCCAGGAAGCTTGCCGAGCTCAGTGGCAAGGGAGTGACTACCATCATTGGAGGAGGTGACTCTGTCGCTGCTGTGGAGAAGGCTGGACTCGCTGACAAGATGAGCCACATCTCAACAGGAGGTGGTGCCAGCTTAGAGCTTCTAGAGGGCAAACCATTACCTGGAGTCCTGGCTCTTGATGATGCTTAAGCCGAAATTTTCCTCGTGTTACTTCTTAAGAACATGCTTGGTAAATGTTTGGTATTACAATCAGAGTGGACTAGATGAGCGCTGATCTTTGGAGGCTGTAGAGTGACTAAATAAATCTCCTCTCAAGTATATTCAACCATGGAATGGTTTCGGATTGGATCCTTTCCGGGTTTTTTTATTTTGATGATCCAATTATGCAAAAAAAAAAAAAAA | |||||||||
gi|52389812|gb|CV233347.1|CV233347 WS01210.B21_A10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_A10 3', mRNA sequence CAGTTTTCGCTGCCCATTTCT EST sequence (targeted fragment marked with yellow): AGAAGTTTGCAGCGGGAACTGAGGCAATTGCCAGGAAGCTTGCCGAGCTCAGTGGCAAGGGAGTGACTACCATCATTGGAGGAGGTGACTCTGTCGCTGCTGTGGAGAAGGCTGGACTCGCTGACAAGATGAGCCACATCTCAACAGGAGGTGGTGCCAGCTTAGAGCTTCTAGAGGGCAAACCATTACCTGGAGTCCTGGCTCTTGATGATGCTTAAGCCGAAATTTTCCTCGTGTTACTTCTTAAGAACATGCTTGGTAAATGTTTGGTATTACAATCAGAGTGGACTAGATGAGCGCTGATCTTTGGAGGCTGTAGAGTGACTAAATAAATCTCCTCTCAAGTATATTCAACCATGGAATGGTTTCGGATTGGATCCTTTCCGGGTTTTTTTATTTTGATGATCCAATTATGCGAATTTGCTCTCAACGTGCCTATTCTCAGTCTGAAATTTCAATGCTGATTCCAATGTCGAATCAAAAAAAAAAAAAAAA | |||||||||
gi|52494272|gb|CV241297.1|CV241297 WS02511.B21_M17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02511_M17 3', mRNA sequence CAGTTTTCGCTGCCCATTTCT EST sequence (targeted fragment marked with yellow): GATGGACAGGAGGTAACCAAGGTAGTGCCTGCTGTGTCAGAGGAAATCAAAGAAGCTTTGATTAGGAATATCAGGAGAAGAATGACCCCACAGCCACTGAAGATAAGGGCTGATATTGAGATGAAATGTTTCCAGTTTGATGGTGTTCTCCACATTAAGGATGCAATGCGGAAAGCTGAGGCTGCTGGAAATGCAGACTGCCCTGTGAAAATTAAACTGGTTGCTCCTCCACTTTATGTTCTCACCACACAAACCCTAGACAAGGATCAAGGAATATCAATTCTCACCCAAGCAATTGCTGCATGCACTGAAGCAATAGAGGCGCAGAAAGGGAAACTTGTTGTGAAGGAGCCACCGAGAGCAGTGAGCGAACGAGATGATAAATTGCTTACCGAGCACATGCTTAAGTTGCGGAGTGCCAATGAAGAGATCAGTGGCGATGAAGATAGTGAAGAAGAAGAAGATACGGGGTTGGGAGATGCTGATGTGGAGAACGCAGTAGGTATAATGGAGTGAAAAAGGCAGCGGAAACTGCTACTTTTTGTTTGGAAAATCATTTCCCCAATTTTTTGGACAAGGTTTTGGGGGAATTGTATTGATGAGTTTTTTTTACCAATTTACTCAATCATTGAGCAGATTTTAGGTGAGGATACATAACTGCCTATTTATTTAACTGCTGAACAATTTGCTATTCTCTGTCGTCTTTCTCGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73893289|gb|DT496027.1|DT496027 WS01122.BR_D04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_D04 5', mRNA sequence CAGTTTTCGCTGCCCATTTCT EST sequence (targeted fragment marked with yellow): TCCTGAGGCAAGGCTCTCACTATTGCAGCCAGTAAGTGGATGTGCTCACAAGCCAAAGCCCCATGTCCTCAGCTTCTTTGCATCATCGTTTCCATCCCCTCTATCTTCTTAAGATAGGACAAGGGAACCCATCAAGGGCTTATCTCAGAGGAAATAAGAAATTAGCAGAGAAAACTGGTGGAGTTTTAAGTATCAAACCTTCGCTCATTGGTTTTGCGCTTCATGTAATGATAGGGTTCTCCTGCCGCTGCTGCTGGAACATGGTGAGAGATGTGGGTGCTGTTACTTGGGGCATTGAGGCATGTGTGGCCTTTGTCATGAGAATATTTGTCAAGCAAATCGGAGTTTTAGGCTTGAGTGGCGGCAGGTCTGGATACACAAGAAACCACATTTCTTTTATCCAATCATTGCAAAAAGCTCACTTCTTCTTCTTCCTCTTCTTCTGCTTCCTTGGCTTCTGGTAAATGCTGGTGGGGCATGGTGGTGATATTGGCTAGACGGCTCAATCTCTTTATTATGATATAGGACTACTTACTAATCTTTTGCTTTCACTTTTGTTACTAGCTTTCCTATTTTTTTCCCTTTCCTTTCCTTTTTTTTTTTTTTGCTGATAGTTTTGTTGATATGTAATTGGCATCCAAATGTTCATGTGGAAGTGCAACAAAAGGTTGGCATGGCATCTTTGATTCTTGTTTCTTTCAAGTAATACTAATTAACTTGCTGTTTGGTGCTCCAAAAAAAAAAAAAAAACTCGAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|52382727|gb|CV229842.1|CV229842 WS01914.B21_J17 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01914_J17 3', mRNA sequence CAGTTTTCGCTGCCCATTTCT EST sequence (targeted fragment marked with yellow): GGGTATGCTAGTCCTATGCGACAAGCGGGGCAGCTGCGGTCCTCACTAGACCCAAGCAATCTAGCGCAAGAGAGACCACCTGTGATACCAGGGAATGTTTCTAAGTCAAGGCTGTCAGAGGCCAAAGCTGAAGGAATGAATTTAAGAAAATCAAAATGGTGAGAAATCCAGGTAGTTTTTAGGCAAGGCTGGTTAGATGCCTAATGGTAGAAGAACTAGGCAGTGAGAACTGAGAAGTTATCCCCTGGTCGCCATTCTAGAATTACTGAAGTTGCTGCAATCGTTGGTCAACATTCACCGAACTTTTGTCAATTTGTAAGAATGCTCGTGCCCATAGAGTTCTTGTAGGAAAAAAAAAAAAAAAAAA | |||||||||