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mature miRNA: CATATCTTGGGACCTCACCT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|60702154|gb|DN491964.1|DN491964 V037D11.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V037D11 3', mRNA 

CATATCTTGGGACCTCACCT
 |||||.|||| |||| |||
TTATAGGACCCCGGAGCGGA

EST sequence (targeted fragment marked with yellow):
GTAGCTGTGACCAAAGGAGTGGAGGAGGCGAGGCCCCAGGATATTTGGTCACGTACTTAACCCAACTGGCATAAGATCTCCTCACAAGATTTTGCGAAAGAAACTCTTTGGTGAAAAAGTGGCTCAATGGTACCCTCATGATATCACGAAAGATGACCCTCTTAACATTGATCGCCGCGAAGAAAAGCGGTTATCAAAACTTGAAATTTTGAAGCGTCGTGGAAAGGGGCCGCCCAAGAAGGGACAAGGGAAGGGTGCTGTGAAGCGTAATAAGGGGAAATGATGATTTTCTCTTGTTTTTCGAATCAAATTGAGTGGTTTTTTTCTGATCAAGAGTATTTTCTGGTTTTGTCACAACTTTAGGATTTGTATGCCTGTGCCATCTTTTCTCGCACGGCGCCCACTATTTGGGGAAGAGTACTTTCTATGAAAATGGGCGTACATTGATGCGGAAAAACATTACTACCCATCTAATGTTGTCTATGGAATCGCACACTTCTTGCTTGTCTTAAGTGACTGTGCAGTGCAGGTGCTAAAAAGAGGATAGAGAATTTGAGTTCGAACTCCATTTTTAGCAGTTAAGCTAGTACGTCTTCTTTGAGCTTACTTCAGTGCTAAATTTACAGCGCGGAGAAACTAAATAATACTCCATCCTTCTGTGTTTTCCCC


gi|73887344|gb|DT490082.1|DT490082 WS02543.B21_P19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_P19 3', mRNA sequence 

CATATCTTGGGACCTCACCT
||||||||.||| |.| ||.
GTATAGAATCCTAGGGAGGG

EST sequence (targeted fragment marked with yellow):
GAAGAGAAAGATGGGTAGAAGAAAAAGACATCGTTGACTTACCTTATGTTACTGCAATCATGAAAGAGACCATGCGTCTACACAATGTGTCGCCATTACTGGTCCCAAGAGTTGCCCGTGAAGACGTTCAAATTTCTGGCTATGATATTCCAAAAGGCACTGTTGTGATGGTGAATGTATGGACCATTGGGAGGGATCCTAAGATATGGGACAACCCTAATGAATTTTGTCCGGAGAGATTTCTCGGTGAGGAGATTGAAGTTGAAGGTCAAAACTTTAAGCTAATGCCCTTCGGAGCTGGCAAGAGGATTTGCGTTGGGTACCCTCTTGGGTTAAAGATAATTCAATCGAGTGTGGCAAATCTCTTGCATGGATTTAATTGGAAATTGCCTAAAGGCATGAAGAAAGAGGACTTGGATATGGAAGAAATCTTCGCACTTTCTACTCCCAAGAAGAACCCGCTTGTCGCTGTTGCTGAGCCTCGACTTCCGCCGCATCTCTACTCCGTGTAAATGGAATTATTAGCTTGTTTCAGCCTTTCTCTCTCGAAATAATACTAGTATTGTCTTGTGTTAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA


gi|38585582|gb|CK101257.1|CK101257 F034P12.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F034P12 5', mRNA seque 

CATATCTTGGGACCTCACCT
||||||||.||| |.| ||.
GTATAGAATCCTAGGGAGGG

EST sequence (targeted fragment marked with yellow):
CTTACTTCGATTTGCAAGGGAACATCAAGAAAATGAAGGCTGTGGCCAAAAAGGTTGACAGGTTTATAGAGCATGAACTGGAGGAACACGATGCTAGGAGAAATGGGGTTAAGAACTATGTGGCTAAGGATATGATGGATATCCTCTTACAACTTTCCGATGATCCTAGTCTTGATGTCGAATTCGGAAGAACCGGAGTGAAGGCCCTCACGCTGGACTTGATTGCGGGCGGAACTGAGAGCACTGCAGTGACAGCAGAATGGGCGCTAGCCGAGCTTTTGAAGAAGCCAGAGATTTTTGAGAAGGCAACAGAAGAGCTAGATAGAGTAATCGGAAGAGAAAGATGGGTAGAAGAAAAAGACATCGTTGACTTACCTTATGTTACTGCAATCATGAAAGAGACCATGCGTCTACACAATGTGTCGCCATTACTGGTCCCAAGAGTTGCCCGTGAAGACGTTCAAATTTCTGGCTATGATATTCCAAAAGGCACTGTTGTGATGGTGAATGTATGGACCATTGGGAGGGATCCTAAGATATGGGACAACC


gi|38574770|gb|CK090445.1|CK090445 F005P39.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F005P39 3', mRNA seque 

CATATCTTGGGACCTCACCT
||||||||.||| |.| ||.
GTATAGAATCCTAGGGAGGG

EST sequence (targeted fragment marked with yellow):
ATATTCCAAAAGGCACTGTTGTGATGGTGAATGTATGGACCATTGGGAGGGATCCTAAGATATGGGACACCCCTAATGAATTTTGTCCGGAGAGATTTCTCGGTGAGGAGATTGAAGTTGAAGGTCAAAACTTTAAGCTAATGCCCTTCGGAGCTGGCAAAAGGATTTGCGTTGGGTACCCTCTTGGGTTAAAGATAATTCAATCGAGTGTGGCAAATTTTTTGCATGGATTTAATTGGAAGTTGCCTAAAGGCATGAAGAAAAAGGACTTGGATATGGAAGAAATTTTCGCACTTTTTACTCCCAAAAAGAACCCGCTTGTCGCTGTTGTTGAGCCTCGACTTCCGCCGCATTTTTACTCCGTGTAAATGGAATTATTAGCTTGTTTCAGCCTTTTTCTCTCGAAATAAAACTAGTATTGTCTTGTGTTGCTCTCCTCCAAAGCTTGCTTGTGACATCACCTGTGCATTTCCATTACAGGGAGAGATTACAGGGGGTACTTGGTGCCTCTGACGGGTTAAGTTATTGGACCCCAGCCCAAATTGATAAAAGGGCATCATGCCCTGCGTGAATAACCCCGTCAAAACTAGGACTTT