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mature miRNA: CATCGATGCACGGCACCGTGCAC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88419401|gb|CI599234.1|CI599234 CI599234 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone 

CATCGATGCACGGCACCGTGCAC
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GTAGCTCCGTGCCGTGCCACGCG

EST sequence (targeted fragment marked with yellow):
GGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCAAACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTAATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAAGCACAGGTGAAGCTGCACAGGGCGACAATGAGGTGTGGCAGAATTTTGAGGATTTTGCGGACAACCTGATGCTTCATCACCAGATTGCACACCTGGATACGTTCCACCTGAATGTTAATAATGTGTATCGTTGGGGTAAACATGCATCTAGGTGGATTCGTCGCACCATCAAGTATAACACCAAGGTTCCTGGCCATTCCTCGCCCGGGATTGAGCTGCAGTTCTTGGAGCCTCAAAAGACTACATCTTTCTAAAATTTGTGTGATGATTTGTCCGCAAACAATTACTTCATGTGGTGGTTTTGGAGGATTGAATTAAA


gi|86891745|gb|CI309999.1|CI309999 CI309999 Oryza sativa (japonica cultivar-group) BAP treated callus Oryza sativa Japonica Grou 

CATCGATGCACGGCACCGTGCAC
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GTAGCTCCGTGCCGTGCCACGCG

EST sequence (targeted fragment marked with yellow):
CTTTTTGTCCTCCCCTTTCTCCGTCCGGAGGAGCCGAGGAGTTGTCGTCTGTCCGTGGGTCTCGACTCCATCGGTCTTGCGCGCTATCTCCGAGGCTCCGGCGACGCGGCTGGGCCTTGTGCAGCGACGGCCGGCTGCTCCGACACTGCAGTGGAATTGCTCCGAGAGCAGAGCTCTCCAGGTCTCCATGGATCTGGACACCACACGAAAGCGGCCCCGTGAAAGTGGCGTCGCCGTCGATCGGCTCAGCGCGTTGCCGGACTGCCTCCTCCATGTCATCATGTCCTTCATGAAGGCCAGGCAGGTGGTGCAGACGTGCATGCTGTCCAAGAGGTGGGAGCACCTCTGGCGCACCGTGCCGTGCCTCGATGTAGATCATCGGGAGTTCCAAGGCACAGGTGAAGCTGCACAGGGCGACNATGAGGTGTGGCAGAATTTTGAGGA