| mature miRNA: CATCTACTCCCTCCGTCCCTA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198089798|gb|FL815559.1|FL815559 CCGG14616.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgat CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCACATCGTCCAGCGTGTGAAACAGAGGATCGCCGCTGGCGACATCGGCTCGATTGCCGACTCACGGCTCGGAGGCGCTTTCGACGTCAGCTCCATGTGGAAGGTTGTGGACATTGCTATGGCGTGCACGGTGGACGCCAGCGCCGCGAGGCCCACGATGGCCGACGTCGTGGTGCAGCTCAAGGACAGCCTGGCGCTGGAGGATGCTCGGGTGAAGGACTGCAGCGTCCCGACGCGAACGGTGCAGCGTGATGATGCGGCTTTGATTCCCTCTTTTGGTCCATCGGTGAGATGAGGTCTACTCCCTCCATCCTCAAATATAAGTCATTTTAGCGTTTTTAGGACAGATTGTGGTTGTGTAGAAAAGACTCCCCTACCCCTAATTATTAAGCATTGGGAATGTGCTAATTAAACTAGCATGTTTTTTCTCATGCACCTCCCCCACATGTACCTCCCCCATATGATTGCATGCATATCTTTCTATTTGAAAAGACCCAAAAACAATGCACAATTAAGATGGTTGGGTCCATACATTTGAGGACAGAGGGAGTATATGGTTTGGTCCATTTGTAGTCTGCGCTGGGGCTTCTGTGCTGTGAACTTGATGTGGATTGTGAATGCACATTAGAGCCTGTTTGTGCATTAGAGCCTGTCTGTGCATTCATTTTCAATCTGTACTTGTTAGTGAGCACACAGGTAATAAGGTTGGCTGTCAAATGCGAAGGAAACCAGAACAATGAAACCATGGTTATCCAAAATAAAATAGTGATCCCTCCATTAGTTTTGATT | |||||||||
gi|304508333|gb|HO307043.1|HO307043 CFCB5193.b1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB5193 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCGCGGCCGTCATGTCAGTCAGTTACTCGGCGATTGCGTGGATCGCGTCAGCAGATCATCACAAGAAAAATTCAGCAGAGGTGGACTACAACCTGCGTGCTACGACGACACCCGGGAAGGTGTTCGACTTCTTGGGGGGACTGGGGGATGTTGCGTTCACATATGCGGGGCACAACGTTGTGCTTGAGATCCAGGCCACCATCCCGTCGACACCGGACAAGCCATCCAAGAAGCCCATGTGGAAGGGTGTTGTCGTCGCCTACATCATCATCGCCGCATGCTACTTTCCCGTTGCGCTCGTCGGATATTGGGCCTTTGGCAACCAAGTTGATGAGAACATCCTCATCACCCTAAACAAACCAAAGTGGCTCATCGCCCTCGCCAACATGATGGTCGTCGTCCATGTTGTTGGCAGCTACCAGGTACATACATACATATGTACATGTATATCAGTGCTATATAGTACTATCACCTCTGGACTGTGCGCGGTAAGGTCAGAATCAGAACTACTCTCTTCGTTTCAAATTATAGGTCGTTTTGGCTTTCTAGATACATAGATTTAGAAAAGTTAAAAACACCTATAATTTGGGATGGAGGGAGTAGCTCTGTACTGAGTGTGGTTGGTGGCG | |||||||||
gi|198099022|gb|FL826537.1|FL826537 CCGH7266.b1 CCGH Panicum virgatum late flowering buds + seed development (L) Panicum virgatu CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): CAGATACAAATTGAGATGCAATGGAGAACTTCCTAGACGGAATTGGTACTAGAAATGTAACATCTCTAAAATATTTGATTGGCTCTATGCATTTTCATTTACAATGTCTTCATGGTACTTGGTATTGATATAATTTGTTGGATCTCATTAGAAGCTAAAACAACACTCTTTGCACTTATTTTGGGACAGAGGGAGTAGGTGTGTTAATGTGTTACTGACCCCTGGAAAACGAACTCGAACTTATTCTGTGACTACTACAGATCCATACAAGTATACTTCGGCATTCTGTC | |||||||||
gi|198359843|gb|GD025764.1|GD025764 CCHZ12496.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): CAAGAGAAGATCTGGTTGGGTCAGTGTTCATTGCTTTTGGGGTCACTTTGTTTGTGGGTTTCTTCTATGCTGCCATCGTGTCCAAGCTGCTTCCACCATATGAAAACAGTCTTCTAGCCGCCATCCAAAATGATTGGTATTACTGCCTACTTGTGCCATTGACGCTTCCTGTCATAATCGTGGCAGTCTATCTGCATTGGCTTAGCATGAAGATGTTTAAACATGCATGAAGCAAAATTTCCATGGATTTTATAGAGCAAGTATGCAGTTTTGTTCCAGTTTCAGAAACTCTGGATAAGATGAGGATTAAGGACGGAGGGAGTAGTTTGTTCTACTACTGTGTGACGGTTGTGCAAACAAAGAGGTTTCTTTTGTTCGCAGATGTGAAGATGTTTTGGAGAATTGTGGTACAGATGCTAGAGAACACTGGATATTTTTTACCTTTTATATGCTGTGCTCCAAGGCCAAGCTGGAGGCACCAAAATCAGCAGACGGGAGCAACTATCTTTGCTGGGCCTCTATAAGGAAGTATCGAATTGCAAGTTGTGTTGACTCCCTAGTCGCTGAAGAAGGCAGAACGTGCTGCAAAACATCTGAACATTTTGGTGTCCTTCTTGAGTGTTTTCTTCTTTTAGTCATGTGGTGATTGTAATATTTTACATGGGTTGAAAACATCTTTTTGCCTGCTGTATGGATTTTTGACGGTCGACTTATCCTCCCATGCTCTCAGCGTG | |||||||||
gi|198368258|gb|GD034646.1|GD034646 CCHZ18120.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): ATGTCCAGATCCAAAATATCATTAATAAATCTGGATAAATAAATGGTATCTTTAATGAATCTAGTCATTGACGAGGATTGCATTTATTTTAGGGTGGAGGGAGTATATGGAACTGAAATTAAGATATCTATGCTAGAATAAAAC | |||||||||
gi|197954420|gb|FL698799.1|FL698799 CCGA5992.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA5992 3', m CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): ACTACATGACACCATGGAGCAAGTTTATGGACTAAAAATGTATTTTTGAGAGATTAGGGACCTATGTAACACCTTGAACCAAGTTTAGCGATATGAAAATGCATTTTAAGAGTTTAGGGACCTACTCCCTCTGTCCCTTTTTAAGTGTCGCCGTTGGTGTGCGTGCCACAAGTTTGACTCCATTTGTAGAAAAAACATGCAACATTTGTATCTCCAAATAAATTTGTTAAAAAACTAGATTAAAAGAACTATCTAATGATATTAATTATGTGTCAAAAATATTAACATTTTTTTATATAAAAATAATCAAAATTATTTTTTGGAAAGCGAAAGCGACAGTTATTTAGGGACGGAGGGAGTAGATGACACACCAGAACAAGTTTAGGGACCGCTTGTGTACTTTACTCTTTGTTTTTCCTTCTTGATGATTGTGTAGTTTTGTTGCTTTTCAACTTTCTACTAGAGCTTGCATGCATGGACGACGTTCTTCTTTGAGCCGTTGTTTTTTCATTGGGTATATAGTAAGCTCGGATGTGGGCCTTCATTCCCACGACAACAGTCCGAATGGATTGCCAGCTAAGGCCCATCCGTGTGAATGGGCCTGCCGTCTCATAATGGTCCCATGGGCCTTTTGCATGCAAGCAAGGCCCATGACACTAGTTGTGTTCAACATATTCCTCTAAAAAAAAGTTGTGTTCAACATATCCTTTCAG | |||||||||
gi|198007978|gb|FL752577.1|FL752577 CCGC527.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatu CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): AAAGACCTACTTCTTTCCTCACAATACCTCCAAAGCGCATCCGTACAGCTGCCAGGCAACGAGTTGTAAGCTCATTTCATGCTGGTGCTAGTGGACCACCCCAAGTCACAAGTAAGACAGATGCTTCAAGTGGAGACACAAACTCCTGCCAAGATGATCAAAGTTCGTTGCATGGAGGGTCCTTTCCATGGAGGTACACAGATTTTGAATCAACAGTTGAGTCAAATAGACAACTGCCTTATGATGCTAGTGAAGTGTGCACTAAAGCAAACAAGAAGAAAAAGCTTAAGAACCCTGGATACAAGATTGCTCAAAACACAGTCAATTCCTCTATGCCAACTTCTGTAAAGTTTCAGGGCCGTATGTATGATCCGAGACTGCAAGGTGACTTGACTAACAAATATGAGCAGAAGGAGTACCTGAAAAAGAGATCAGATATCCACCAATATGATTCAAATGGGAACAGTGTTGCATATGGTGGTCAACATGCTTCTAAGAAGCTTAAAATACTGAAACAAGGGGTAGATATTTCGCAAGAAGCTTCTCATGCTGCATCACAGATGAGCAACATGGCAAATTCTGCTAGATTTATAAAGTTCATCACTAATAGGGATCGTGGGAGAAGATGCAAAGCACTGAAGATGACTTCTGTTGGTGGATGGTCAAACTTCGAGGATCAGGCTCTTGTTGTCCTCGTCCATGATATGGGTCAAAACTGGGAGCTAGTTTGTGATGCAATTAATAGCATCGTGCAGTTCAAGTCTGTA | |||||||||
gi|198184411|gb|FL895479.1|FL895479 CCGN12033.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN1 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): AAAAACCAGTCATCCTAGGATTCAAAAGTTGTCCCAAAAAATAAGTCATCCTACCCTGTTTGGAAAGTGTATGTGCATATAAGAATCAATTAGTGCTAAATATGGATGCTAAATAGGGGCAAACATGGTCATTTTACATTCTTGCTAATCTGTCCTAAAATTCCTAGGATGACTAGTATTTTGGGACGGAGGGAGTAGAGCATTAAATGCAGTTGAAAAAATAATTAATTACACAGTCTAACTGATTAGTACGAAATAAATTTTTTAAATCTAATTAGTCCATATTTGAACATTATTTGTCAAGTAATAACGAAATGTGCTATGGTACTAAAAACACAAACTTTTTTCCCAACTAAACACACCTTAGGCAAAAATACTTTCAGTTAGAAAATATAGGTTTGGCTCCCTCAAGAACTGGAGAAGTAAAACTATGAATCATGTTCCCTCCTTAGCATTGTAAACAAAAACATGAGGCTCATATTCAGACAGCTCGCTGGGTATTTTCTAGCATGTCAGGCCTGTTTTAGTTCGCGAATTTTTTTGAATTTTGGTACTATATTATTTTCGTTGTTATTTGTCAATTAATATCTAATTATAAATTAATTAGATTTAAAAGATTTGTCTCGTCGTTTACAGTCAAACTGTATAATTAGTTTTTTTTTCAATTGTATTTAATGCTTTATACATATATTTAAAAATTTTATGTGATGGATAATACAGAAATTTTTTTGAGAACTAAAGAGAGCCGTATGAGCATCTGCCCAGCAGTGCAAACCTGTGTTGCAGCTCAGCAG | |||||||||
gi|198371470|gb|GD043111.1|GD043111 CCHZ22667.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCCACAAAGTGTTCCTCCGGCTGGTTCAGAAGGAGCCGTGGTGTATCGTTGCAAGGCCCCCTCCAGCAGCGGCTCGTGCGATTGGTTGTTGTGTTGGGGCATCCCGTACGTTGGTAACAACGGGGTGTACACCGAAATCCGTGAGGAGGGGCACTTCCCTGAGCACTGGGATTATATCTACCATGAGAAGCTGGAATGTGCAGATCGCAGCTCTACGGATAGCGGCTATGGATATGTTTCCAATACTCAGATCGGTGAAGGCACTACCGTTGAAGTCCGTGCAGTTTTCCAGTTTGCCTAAAATAATATATACTCACATCCCAAAGTAAATGCAATCCTAGAGATGTCTTTACATGTCCAGATCCAAAATATCATTAATAAATCTGGATAAATAAATGGTATCTTTAATGAATCTAGTCATTGACGAGGATTGCATTTATTTTAGGGCGGAGGGAGTATATGGAACTGAAATTAAGATATCTATGCTAGAATAAAACATCACAGGTA | |||||||||
gi|197952409|gb|FL692354.1|FL692354 CCGA2645.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA2645 3', m CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): ATCATAATCAAATATAGTTTATAATGATATAAGTTTATAATCAAAAGTGATATAATATATATAAATAATAGTCAAAGTGTTGTTTAGAAGACCGTGTCATGTTCCACCATGCTTATAAACGGGGAAGGAGGGAGTAGTTGTATTCCATAATTCATCCACTCAGAATTCATTTGTTAGATAAAGGATGCATGATATGTTCCTTAACCGTTTCACATTGACTGTCTTAATTGATAAGTATCATATTATACTGCATTACTTATTTTTTGTTTGCCACTAAGTTATCTTTGTCAAATGTTTAGTGTGACAATTGTTGTTGCATATCTAATGAAGAAGCATCAAATGAGCCTCGAAAGTGCCTTATCTCTAGTTAGAAGCAAACGACCTCAAGTGGCTCCTAATGAGGGGTTTATTTCCCAGCTGGAAAACTTTGAGAAATCCCTGGAAGTGGAGCAGGAACAGAGAACACATTCTTTGCAGAGCTAATTATAGGTGTAGGGGCGTGTATGTCAAGAATATAATGTTAAGAGCCTCCTGCCTGCATATTATGTCATCTACATATGATGCGTTGGCAAACCGGGGCTTCACTGCTTTGTTCTGTAAACAAGTGACATTGGTGACTCATCATATTGGAATGTGGTTTACATGCTCGACAATCATCACTGTAATTTCTATTCCAATGAATCGAATGTTAATGATCTGTGCTACTTCTTATTATTTTTTTACTTGTAACAATCTTGATGCTTAAACTATATTAAGCAGCAGTATGACTGACGTAGATGTATGTATATGATTCTTCC | |||||||||
gi|198208270|gb|FL923207.1|FL923207 CCGO14818.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO14818 5', mRNA s CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): ACGCAGCTGCCTCCGAGCGAGCCAGCCAGCAAGGTGTAGCAGGCGCGAGCACGGTTGGCTGGTGGAGGGAGGGAGGGAGGAGATGAAGGCGGGGGAGCACGCGAAGCTGGTGCGGGGCCTCCGGCAGGAGTCGCGGCGGCTACGCCTGCTCGTCATCATCATCGGCTTCTTCCTCATCACCCTCACCTTCGTCGTCGTCACCAAGCCCGACGCGATCCTGTTCAACCTGAACGGCAGGCTGTCGGTGGACCAGGCACCGCGTTCGCTCCTGATCCGCCAGGGGGTCGACGCCGACGCCGCCGCCACGAGGAGATCCGCCGATACTCTCGCCGCTGCGGCCGAGGATCCAAAGGTGGTGGACGGCGACAGCGCCGGAGTGGAAGCCAACGCCAACGCCAACGCCAACGCCGGAGTAGGAGCCAGTGAAGACGAGAAGCAAGCGCTCACTAGTGAGACCGAGCAGGGCATAAAGGCGGAGGAGGCCACCGCATCTGAGCTTTTAGGTGGGGAAGACGAAGAAGGGAGGAAAGGCCTGCACAACGGCCGCCAAGATGACCAGGAGCACAAGTTGACCCTCCCAACTGTTTCCAATTATACCATTCACGAAACCACAAATGACAGCGACATGGCAAACAAGAAGGAATTAAGCTCGTAATGGATGTTGACCAGAGCAATGGCAGGACAGATCTCATCAACTAGAGTTGGATAATATGG | |||||||||
gi|198288983|gb|FL957205.1|FL957205 CCHY2906.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY2906 5', mRNA s CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): GATTGGTATTACTGCCTACTTGTGCCATTGACGCTTCCTGTCATAATCGTGGCAGTCTATCTGCATTGGCTTAGCATGAAGATGTTTAAACATGCATGAAGCAAAATTTCCATGGATTTTATAGAGCAAGTATGCAGTTTTGTTCCAGTTTCAGAAACTCTGGATAAGATGAGGATTAAGGACGGAGGGAGTAGTTTGTTCTACTACTGTGTGGCGGTTGTGCAAACAAAGAGGTTTCTTTTGTTCGCAGATGTGAAGATGTTTTGGAGAATTGTGGTACAGATGCTAGAGAACACTGGATATTTTTTACCTTTTATATGCTGTGCTCCAAGGCCAAGCTGGAGGCACCAAAATCAGCAGACGGGAGCAACTATCTTTGCTGGGCCTCTATAAGGAAGTATCGAATTGCAAGTTGTGTTGACTCCCTAGTCGCTGAAGAAGGCAGAACGTGCTGCAAAACATCTGAACATTTTGGTGTCCTTCTTGAGTGTTTTCTTCTTTTAGTCAATGTGGTGATTGTAATATTTTACATGGTTGAAAACATCTTTTTTGCCTGCTGTATGGATTTTTGACGGTCGACTTATCCTCCCATGCTCTCAGCGTGCTTGATGGTCGATTTAAAGGAAGAGTGTCAGCAACTGGTTCAGTTAGTATGCCACCTCGTGGTGGAATTTGTATTGGAAAAGGGTACAGATAGCCTGTGCAGTGCCATTGCAAGTCAGAGATGATATTCGTTACTCACTTGGTGTCTA | |||||||||
gi|197964620|gb|FL708692.1|FL708692 CCGA12238.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA12238 5', CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCTGACAATACCGGATAATTACTCGTTTTGATAACTACTTGTACAACATTTACACACAGGAACAAGGCTACATCAAGGGAGCAAATACAGAGGCTCTTGTGAAGAATAAGAATAATAATACAACACAGGCTCACTAGAGGAGCAATGCTAATTGGCATTGTTTTTTTTTTTGCCAGACTGTGGTCTTCCTATACGAGTTACATTTTTGAGCCATTCCCTCAACTGTTATACTCCCTCCTTCCCCGTTTATAAGGCATGGTGGAACATGACACGGTCTTCTAAACAACACTTTGACCATTTATTTATCATATATTATATCACTTTTGATTATAAACTTATAATCATTGTAAAATATATTTGATTATGAATCCAATTATATGAAATTTGCATTATAAAAATAAAATTTTAATAGTCAAATTATTGGTCAAAGATGACAAGGTTTGAATCTTGATATACGTGTATGCCTTATAAACAGGGAAGGAGGGAGTAGGTTACAACAGAGCTTGGCCTTTTATTGGTTCACAAGGTTGCACCTTGCAGCTTAGCTCTCAATTCTGCGTTCTCCCTCTGTAATCGCTCAACCTCAGCCTTAAGCGCAGCGTTGTTATTCCGTAGGCATTCAATTTCCCCTTCAAGTGTATTATTTTCTCCATTCTCCTGCTGTTCAGTGACAGGTAAAGACGGGAATTGGCCAGTGTATGGTGCGCCAAGCAAGACCTCCCTAATGACTTCATGCGCCGCCAAGCTATCAATGCCCATGTTTTCGTACTCCAAATGCACCCAG | |||||||||
gi|198130372|gb|FL855194.1|FL855194 CCGI3703.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI37 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): GTCAGGCTCAGTGTTTCAGTATGTGTGCACTCTGCTGGGATCCCTGAATCAGATGCCAAAAGGGTACATGGCCTTTCCGTGAGAGAGACTCGACGCCAACGGTAGAAATTAACAAGTACTACGCGCTACACGGTGCGTGCCGAGTGGTAGTTGTGCATCGACCATGACCACACACATTACTGGCACACATGCATGTTCTTCCGTTTAAAATGTTCAGAGTTAGACGACGACCTGCAACTCGTAAATTAGCCACTGCAAAAGCGTCGTGGCTTGGGTATGCCACGTACGTCAACCGTGCCGCGCACGCGTCGTCAAATTTGGACGTTCTGCTAGCGCAGGACAGGACGGAGCACACCGCAATATAATGCCCATCTGAGTCTTGGAATAAAATACATACAGTAGATAGATAGAATTGTACGTAGATGCATATACTCCTTCCGTTCCAAATTATAAGTCATTCTAAGAATTTTGAAGAATAAAAAATTTCTAAGTTTGACCAAATTTATACAACAAGATAATAACATTTACGATACCAATTAAGTATCATTAGATTCTTTGTTAATTATATTTTTATAACATACCTATGTGATGTCATAAATCTTTGTATTTCTCTATATAATTTCGGTCAAACTTTGAAATAGTTTAACTCTTTAAAATTCTTGAAATGACTTATAATTTGGGACGGAGGGAGTATATATCTATGTATATATCCTATCGTTAGTTCGTTGTCGTCGCACCGAACAAGCAGAAGTATGACACAGCTGCGATCCGGGCAAT | |||||||||
gi|198361267|gb|GD031255.1|GD031255 CCHZ15842.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): GATTGATTCTTACATGCGCATGTACTTTCTAAATAGGGTAAGATGACATGTTTTTTGGGACAAAATTTGAGTCCAAAAAAAAACAAGTCATCTTAGGAATTTTAGGACAAATTAACAAGAAGGTAAAAATGACCATGTTTGCCCCTATTTATTATCCTTATTTGGCGCTGATTGATTCTTACATGCACATGCACTTTCTAAATAGGGTAAGATGACATGTTTTTTGGGACGGGGGGAGTACATCTTTAGCACCCCTTTCTGATATTTTGATCTGTCAGCTTACACTTTGACATATCTTGTTACCTTGAGTAAAAGATATGAATGAGCTGATGATTTTTTAAATCATCAGATGAAATTTCACTCTTGACTGTCATCTGTTCTGCAGTTCTTCAACTAAGTTTTCCCTTTCTGTATGTAGTTCATATTGATGCTGGATCTGTATGTGTTCTTTACACCTAGCAAGATCACGCTCTAGCTTGTGATCCCTGTATATTGCTGTTTGAGGCAGCAATGGCCAATGACAATGACGTGCTGCAGATGCCAACTGCTCGCCTGCTTGCTTCTGCAATTCCTAGAGTAGTCACAAAGAGTAAAGGCCTGATCCCTGTATAGTTTGGTTGCTTGTGAATTATGATGACGAAAGGCCAGCCTAGCAGCAAGCTTTTTATTTAATCTTGTTACTTGATCAAGAAGCCTGTCCTGTGCAGCACCATTGAGAGTG | |||||||||
gi|304509343|gb|HO308053.1|HO308053 CFCB5795.g1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB5795 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCTAATCGTTACAGGCGGATCTAAAACCAGCGGAGATCGCGGAGCACTTGGGCTGCGAAGGCCCAGGAAGTGGGTAGGTCGGGAGCAGGGAGAAGCCCATTTTCAGATGCTGCTCTCTCAGTCGGGTACCTTGGCTTCAGTGGGGGCAAGCTGGATGACATAGCTGTGGTTGTATCAATTGTCCGGACTTCTGAAATTCAAGTTATACAAGACTGACTGATGCAGAGAACCAAAGCTCTCAGTTATGTTGAAGCTGTACTGCAAGCGAGCCACCCTTCAGCAAACTACTCCTCTGTCCCAAATTGTAGGTCGTTTTGGCATTTCTATGTGCATTTTTGTTATGCACTTACAATTTGGAACGGAGGGAGTAGAAGTTAAGCTGTGCGTGGTGGTTTCCCAAAAGGTGAACAAGATCAAGATGTAAACATGAGCAACATACATCATGCTTGATCAGCAATAGCCAACGGTCAACAGAGCAAAGCTCCCCCTGTTGCCCTTACATTGTTATGCTATCGGAATAGCACCATTTAGATGTAGCCTGGTGCTCCTCGTTGAGCTGTAATCCAATGTCATCTGTGGATAGGAACTGGACATTCGTGAACAGTGGTTGAAACTTGCGAAGTCAAGTAAAACTTATATACTTTCGTAGCACTGGCAATCATATGAGAGTTTTGCCGATGG | |||||||||
gi|169683869|gb|FE612618.1|FE612618 CBYX10885.b1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX10885 5', m CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): AAAGGATTGTTTGATGTCTCCAATATCCACACTTGCAAATGGTTCATATATGTATAAACATGTCAGTAAGATGTATTTTTTTACACTTTTTTCATTTCTTATACAGAAATGTCACTGGAATCAGCTTCTTGTGTTTATTAATGCATATATGGCTGGAGCATATTCCTAACTGCAAGTGACACCTATTCATTCTTCAAAAGGTGTTGGATTCGGCATAAACTTTTAGTCTTTCATCAAAAGCAGATATATTTTGAACTTGTGCTTCCTGGAAAGAAATCTCATTTCCTATGTCTTGCTAGATAGAAAGAGGGGCAATTTTTTTTTATCAGCTATTTGCTATGCCAGAAATTTATACTCTCTTCATCCCAAATTATTAGTCGTTTTGGCTTTTTCTAGATGCATAGCTTTTGCTATACATCTACATATATGTTTATGTCTAGGTGCGTAGCAAAGACAATGAATTTAGAAAAGCCAAAGCGACTAATAATTTGGGACGGAGGGAGTATATATGAATATGAAT | |||||||||
gi|304521758|gb|HO316759.1|HO316759 CFHA4934.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA4934 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): GGGATCCACGATGGGAGGATGAATTCGAGTTTGTGTGTGAGGAGCCACCTGTAAATGATAAGCTACATGTTGAAGTCCTAAGTAAAGCCCCGAAGAAAGGGCTGATACATGGCAAGGAAACCTTGGGCTACATTGATATCAGCCTTGCAGATGTGATCAGCAACAAGCGGATTAATGAGAAGTACCATCTCATAGACTCAAAAAATGGTCAGATACAAATTGAGATGCAATGGAGAACTTCCTAGACGGAATTGGTACTAGAAATGTAACATCTCTAAAATATTTGATTGGCTCTATGCATTTTCATTTACAATGTATTCATGGTACTTGGTATTGATATAATTTGTTGGATCTCATTAGAAGCTAAAACAACACTCTTTGCACTTATTTTGGGACAGAGGGAGTAGGTGTGTTAATGTGTTACTGACCCTGGAAACGAACTCTGAACTTATTCTGTGACTACTACAGATCATACAAGTATACTCGGCATTCTGTCT | |||||||||
gi|198025463|gb|FL768074.1|FL768074 CCGC14504.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virga CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): ATGAAAATATATCTATCATACTTGGGATGGAGGGAGTATATTACTAAATTAGAACGTACAGATTCATACACAACTTAGTCCATACACAGCACGGCGATTATACAACACTGAAAAAGAGACCAAATGGCGATGCTACATCTTCACTTGTTAGAACTCCACATCAGTATTGCGGCAGGATATAAGAAAAAACTAATCTAAAATACGTAGTATACAAAAGAATCAGATACTCGCACGCACTATGGTTTCCATGGCGCCGGTGGTGGTGGAGGCGAAGGGAACATGGGTGGCACGGCAGAGAACATCGTGTTCTCGTCCACCCCATGGCCTTCACCTGACAGAGCTACCAATGCTGCGACTAGACCAGCATTGCCCGCCAGCGTTGCTTCAGTGTAGTTGGAGTTCTTGCGGGCATCTTTGAATCCATCATGGCGATCCGGGCCAGCAACCATGGCTCCAACTATGATGTTAGGGTTTGGCTTCTTGGTGTCCCTCCACTTCCACCCTCCTTTGCAGCCATAGTGAACACCGTTCTTGGGGATCGACGCACCGCGGTGGTGAACATGCTTGGGGTAATGCTTTCCAAACCCAACCACATAGCTCATCTTCAAAGGATTCTTTCCCAGGATGTACTCAATCTGCGTCCTTGCAAAGCTGCGAAGAACCTCAATAGAGTAGAAATGGGGGCCGCAATACCATCCAGGGTATCCGCAGCCTCAAGATAGTCACTGAACACAGAAGCAAGGAATGCAGCGTTGACCACAT | |||||||||
gi|197951303|gb|FL692562.1|FL692562 CCGA2763.g1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA2763 3', m CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TCTAGGGACGGAGGGAGTAGACGATTAAGGTGGGAGATGTTTTTCATTGCTATCACGTCAATACCATATACGATACTTTCTTAATGATCAACCTATTGACTGATGCCATCGATGAAAGAAAAATACCTACTACTGGAAGAGTTGCAATAGAGAAACAAGTGGTTTTTGCATGGCAGAATAATGAATAGAGTTCAAATGAATGTCAGAAAGAGAACTTTCTCTGTAACTGTGTTCTTATTGAATCGTTTGCTGGTTGTTGTTATTGATAGATGTTGTTTTGTTATTAGCTGACTAACTCATTTTGGTGTCTGTTGAAACAGTGCGCCTGTTAGTGCACCTGCCCCAACTGCAGCAGCTGGTCCAGCTCCCACTGTTGCGGCAATTGCGCCTGTTAGTGCACCTGCCCCAACTGCAGCAGCTGGTCCAGCTCCCACTGTTGCGGCAATCACTGAAGCGGATCCTTATGGTCAAGCTGTGTCAAACCTTGTTGCTGGTGGCAATCTAGAAGCAACTATACATTCTATTCTTGAAATGGGCGGAGGTGCATGGGACCGTGACACCGTTGTGCGGGCTCTTCGGGCTGCATATAACAACCCAGAGCGTGCTGTTGAATATTTATATTCTGTAAGGATGATGTCTCTTTTTTCCACAATTTTGTTTCTCTACTTCATTGGATGAGTTCTTAGTTTGTTGGGACCTATTAAATGAATGGAGAATTAGCGCTTGGTGTTAGTTTGTACTTAAGCTCCCTTTTATAAGGAATATATTTTTCCTCCCAATCTTCTTCC | |||||||||
gi|304459069|gb|HO258176.1|HO258176 CCTX4062.b1 CCTW Panicum virgatum Cave-in-Rock normalized leaf Panicum virgatum cDNA clone C CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TATAAAAGAGTATGGCTAATTTATTTTTGGTGGTCATAATTCTGCATTGGTCATGCATGTGGAAAAGCCTCAATGGATCTGGCAAGGCAGTCTAGGGATATCTCAATCCTTCTGCTCTTTTTCTGAATAAACAACGCCAAACCTGTTGGAGACTGTCATGTGGAAACAGTTTAGTATCATAAAGCTACATCACTAAGAGGCATCTGGAGGGATATATTTATTCATTCACCTTTTATGAATTACTCATTTTTATAACAACCAAGTAGCCTAGATTCCAGGCTTCATATTCTCTAAAATTCATTTTTTATAACAACCAAGTAGCCTTATATCTTAGGATGGAGGGAGTAGATGCATGTGAATTGCTTAGATATGCTGATTCGTCACATGAATAACATGATTATGCATCTGTGAGAACCATCTGTACTTTATGCCTACCCTTTTTTACAACCTGCATGCTAACTAGTGGTAGTATATATTAATATCTTAGTAAGAATAAATGTATCAAAAATCAAGATTATGCAGTAGAGCATGGTTTGCCTATACTGAAAAATGTACTCTTTCGACTCAATTGTTGTTTGCAAGAGCTGAGGAATTCTATGGATGTGATGACACCTCATACTTGCCTTTGGAAAATTTCACTTCTTTATTGTAGCATTGGCAGACAATTAGTTCGGCTAATGTGTTCTGAATTAGCAACTGTAACTTATTAGAAGTTTACATCTTACTCTAGATGTGGATTTTTCTGTCCAAGTGGGCAGTAAAATTCACTGTAGTGGACAGCTGGCTGATTTGCCCTCA | |||||||||
gi|169691706|gb|FE619012.1|FE619012 CBYY1858.g1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY1858 3', mRNA CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): TGTCTGAAAGTGTGTGTGGCATGTTTAGTAACAGTGTTGGGGGTGGTGGTAGTAGATGGTATTGATGAGGAACAATAATAATGATGGTGGTGAGATGTAGTGGGCGTCGCCGCCGTCGTGTCCTTCCTCCCCGGCCGGTGGAGCACCTGTGGCGGTGCTCTAGCAGTGTGTCGGTGTGTGCAGCAGGCCATGCTTTGATCTGTGGTGTAGGTGTGTGGCCTGCTTGGTGTCCCTTGTGTCATGTGTAACCATCCATTTATATTTATATATATAAATAT | |||||||||
gi|198161273|gb|FL875683.1|FL875683 CCGI15228.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI1 CATCTACTCCCTCCGTCCCTA EST sequence (targeted fragment marked with yellow): CGGCCGGCACGCCGGCGACCGGGAAGATGATGCATCAAGCTGCGCCTGCGACGGAGGTGATCCCGCTGATGACGCCGTACAAGATGGGCCCATTCTCGCTCTCCCACCGGGTGGTCCTCGCGCCCCTCACGCGCTGCCGCTCCTACGGCAACGTGCCGCAGCCGCACGCTGCGGTGTACTACTCGCAGCGCGCCACCAAGGGCGGCCTCCTCATCGCCGAGGCCACGGGGGTGTCCGCCACCGCGCTGGGGTTCCTGGAGACCCCCGGCATATGGACGCAAGAGCAGGTCGAGGCATGGAAGCCCATCGTCGACGCCGTCCACCGGAAAGGCGGGATCTTCTTCTGCCAGATTTGGCACGTCGGCAGGGCCTCCACCAACGGTGTGTTCCTATAGCTACTTGTTCTATTGCTAGCTTATGTCTAGGTGCATAACAAAATCGATGTATTTAGAAAAGTGAAAATAGCTAATAATTTGGAATGGAGGGAGTAGTTGCTGAATATCGAGTAAATCTTTTTTGGGCTCCATTGATATTGATTTGACAGAGCTTCAGCCCGATGGGCAGGCGCCTATCTCGAGCACGGACAAGCAGATTTCCCCCAACGCCGTGCCAGGCGAGGTGTACTCAAAACCACGGCGGCTCCCGAAGGAAGAGATCCCCGCGATCATCGACGACTTCAGGCGCGCTGCGCGGAACGCCATCGCGGCCGGGTTCGACGG | |||||||||