| mature miRNA: CATGGTTCAATGCTGNTGTGA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188274359|gb|EY728701.1|EY728701 CS00-C3-704-007-D12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD CATGGTTCAATGCTGNTGTGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGTCTGTCTCGCTTTAGTGGGAGAGGACTTGATGATAATGCTATTACTCCATCGGCACTGTATCAGTGTCATACCAGAAGAGTAAAAAAGTTAGCTGTTGAAGTTGGAAATCCACATGTGGTCTGGAGTGCAAGTGAAGACGGGACTTTGAGGCAGCATGATTTTCGACAGGGTTCTTCTTGTCCTCCTGCCGGATCTTCTCATCAAGAATGTCGTAATATTCTACTTGATTTACGGTGTGGAGCAAAGAGGTCGCTAGCTGATCCCCCTAAACAAACTCTTTCTCTAAAATCTTGTGATATCAGTTCTACGAGGCCTCATTTACTCCTGGTTGGTGGAAGTGATGCATTTGCTCGTCTGTATGATAGAAGGATGCTGCCTCCACTAACTTCCTGTCAGAAAAGGATGTCACCACCACCTTGTGTTAACTATTTCTGCCCTATGCATCTTTCTGAACATGGACGCTCAAGCTTGCACCTGACTCATGTTACATTTAGTCCCAATGGCGAAGAGGTTCTCCTTAGTTATAGTGGAGAGCATGTATATCTAATGGATGTAAATCATGCTGGTGGGCGTGCCATGCGATATACTGTANGAGACGNCTTCAAAATTATGAGCTTTACACCAACACTCCATGGGTTAGAATTGCAGCCCACCATACATGATTTTCTCCCAACCCATATTCGTGTCAGGGGGGGAAGTGGNCACAGGGGCTTGGAAAGTGCAAAATGTTANTNGAAATTGCTAAAAATTCATTGGAAGAAGGGAAACATCCTTATTATGGAATTGANGGCATGCATGAANTTTTGGANGGGGATCTCAGTGGCATTGGACCATGCTGAAGCATGAATGTCTTGCCT | |||||||||
gi|188344246|gb|EY654505.1|EY654505 CS00-C1-100-056-C06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ CATGGTTCAATGCTGNTGTGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATCAATAGCGTTCTCCCCCGCAGCACCCCTAATTTAAGCGTTCATCGTATATCTTGTTCCTCAAATGCGCTTCATTTTGTTGAGAATTTTCCTTCTTTACACTTTCATCCTTCATTTGCTCCCAAAGAAGCTCCGTCGCTTCCTCCCCCGTTCCTGGTTCCCCGCCCCCGCTCTGGGCCCGAGCTTGTCGTCACAGTCCAACACGAACCCGACGCGATCGACAATGGACCAGGCAGAGCTGGACCGGGTTTTCCAAATGTTCGACCACAACGGAGACGGGCGGATATCGAAGAAGGAGCTGAACGACTCGTTGGAGAACCTGGGAATATACATTCCGGACGTGGAGCTGACCCAGATGATCGAGAGGATCGACGTCAACGGAGACGGCTGCGTCGACATCGACGAGTTCGGGGCGCTGTACAAGTCCATCATGGAAGAGAAAGACGAGGAGGAAGACATGAAGGAAGCGTTCAACGTGTTCGACCAGAACGGCGACGGGTTCATCACGTTTGACGAGTTGAAATCCGTGTTGGGGTCCCTGGGGCTCAAGCAAGGCCGGACCGTAGAGGATTGCAAGCGGATGATCATGAAGGTCGACGTGGACGGTGACGGCATGGTTGATTACAAGGAGTTCAAGCAGATGATGAAAGGCGGTGGGTTCAGTGCTTTGACTTGATTCAATTTAGAGAAAAGATTTTTGTCTTTTTTTATTCCATCATAATCAATGAAAATCATTTGTTGCTGTAAATATAAAATTNCCNNGAACTACATCATACNATTTTGGGTGGTGATGATGATGACGACNATGATTGATGATCCGAACGCCGTAATGCATCGGCTTTCGCACATGTCAAGGGAACNTCNNTGTCTGTNTGTGACNAGTCANTCGGTAATATTACACTATCATTGAATCATGT | |||||||||
gi|56527735|gb|CX043444.1|CX043444 UCRCS07_11B03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 CATGGTTCAATGCTGNTGTGA EST sequence (targeted fragment marked with yellow): CTCCTTCAAAAGCATTATGGAATCTCTTTCTATTAACAAAACTTCAGTTACAAACCAAAACAACATGATGCAAACTTACTGAACTAACTACCTGATGAGGCTTTAAAGTTTAAACTTAGTGATGCTCTTATCTTCTGTAAAATTATAGGCAGGAAATATAGGAAGGAAATATAGGCAAGATCACTGTTAAGTGGTATGGTACAAGAAAACACAGGTACCCTATTATTGCATATGAAGGGCTCAATAACTCCCAAATAGGCCAACAGAAGCTGGAGTTAATACATCAACTGCAATTAAATTGCAAAGTGTGCAAGCTCCTAGTCCCGCAGCATGATATATCAGAACCGCCATTACATTAGCTTTCTCTGGGTCAGAATCAGAGTAGCACATGGTCTCATAAAAAAGATGACAACAGGGATAAGTTTGGACTACAATAGTCGCCTTCTAAAGTTCCGAGCGGTGCCTTGGTAAGTTCTAACCAGCATACCCACTCCTATTCCAATCCCTAGACAGATGCTCAGGCCAATGCCAACCCCCACCCTGACACCAGCATTGAACCATGAGAGTTCTTCATCTTCGCCTTCCAAAAAATCAGTCCCCGAGTATAGATGGTTGTAGTATTCACTTTCCGGTTTGTGATCTGAAAAATCTGATACCTGCAAAGGCAGCTCAGAAGGAGTATCTTTTTGGGACTCTTCACTAGCCTCATACTCTGGTATAGAATCCAACACCCCCCTCCTCGTTTGCTTTTTCCGAGAACTAAGCTGCAGGGTCTTGGTTAAGATGATTGGAGTGCCTGAGAAGGTCCCTGCAACATAGACCTCATTTGTAGGCGAAGCAAAGTCTGAACTCA | |||||||||