mature miRNA: CCAAACCCGAACCTGAACCTG species: Parthenium argentatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|294709976|gb|GW779903.1|GW779903 PBC018D02_04331 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): ATCTCAAGCCAAGCCAACAAGCCTATCAATTAACGATCACAACCTCATATCATCTTTCAAATCAACTTTTTAACACCTTCAAGTGGATCATGTCTTGCTGCAACGGAAAGTGTGGCTGCGGCTCAAGCTGCTCTTGCGGTAGCGGTTGCAAGGGATGCGGGATGTATCCGGACATCGAGACCTCCACCACCACCACCATGATCGTTGACGGCGTTGTGCCAAAGAAGATGTATGATGATGGAAGTGATGCGAGCTTTGTGAGTGAAGGTGGACACGCCTGCAAGTGTGGAGCAAACTGCAAGTGCAATCCTTGCAACTGTTAAAACCAAGATCATTCAAATAAATTAACATCAATCTTTAGATTGTGTCGTATGTTTGTAGGGTTTGAAAAATAAAAAGGACTAAAGCCCTTCTCATGGTACCTCAACCCACTTGGGTGGGTTCGGGTTCGGGTTCGGGTTTGGGTTAGTGTTTTGGTTTGGAGTACGTTATGTTGGTTTCGTGGCTACTATAAATGGTGGTTGTGTGTTAAAGTAAGTAGTATGATTATGGAGTATTTGAATGTTTTGTTGTGTATTTATGGAGTGGAATAGTGGATGAAATTATGAAGCAAAAAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|294696227|gb|GW786846.1|GW786846 PBC095G05_11274 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): CTTTGGCTGCTAAAGTTGAAGAAACTCAAGTCCCACTCTTACTAGATCTTCAAGTAGAGGATACTAAGTTCTTGTTTGAGGCTAAAAACATTCAAAAAATGGAGCTTTTGGTGATGTCAACTTTAAAATGGAGGATGAACCCAGTGACACCAATCTCATTTCTTGATCACATTGTAAGAAGGCTTGGATTAACTGATCATGTTCATTGGGATTTTTATAAAAAATGTGAAGCTTTGATCCTTTGTTTAGTTTCAGATTCAAGATTCGTGTGTTATAAACCATCCGTATTGGCCACAGCTACAATGCTTCATGTTATAGATGAAATTGATCCTCCCAATTATGTTGACTACAAAAGTCAACTTCTGGATCTTCTCAAGACCACTAAGGATGACATAAACGAGTGTTGCGAGCTCATTATGGACCTAGCTTATGATAATCACAATAAAAGAAAACATGATGCGAACGAGACAACAACGTATCCGATTAGTCCAGCTGGTGTGATTGATTTCACTTGTGACGAAAGTTCAAACGACTCATGTGAATTCAACAGTCATCATTTCCGTGAGCCTTTGTTCAAGAAAACAAGAATTGATCAACAATTCGGGTTCGGGTTTGGTTCACTTATAAGCTTTAATCGAGGGTAGTTGTAACCCGCATGCTTGCTATTAATCAATCGTACGGTCCACTACTAAATATAAACGACCTATAAAATTGTA | |||||||||
gi|294709507|gb|GW776996.1|GW776996 PAB916A09_01424 Parthenium argentatum cold acclimated bark cDNA library (PAB) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): AACACACCACTCACTACTCATGGCCACTATACCCACAACCCCTTGTTTCTTCGTGTATTTCGTGTTCATAATAACTTCTGCTTCTTTCTCTATACAAGACACACATGCCCGCAACCCGCGGTTATTAAACAATTCTATTTCCTTCACTCTCACTTATCTTCCACTCTCCCACCGATCCGCTGCAGCTAAAATACGTCCCAGCTCTATTCTAGAACAGGCTTCGGGTTCGGGTTCGGGTTCGGGTTCTAATAACCAGTTATCATTTAAGTATTCGCAGGCCCTGATCGTTTCTCTACCGATCGGGACCCCACCACAGGCCCAACAGATGGTTTTGGATACAGGCAGCCAATTGTCATGGATTCAGTGTCATAACAAAACCCCTACGACGTCGTTTGATCCGACTCGTTCCTCGTCTTTCTCTATCCTCCCTTGTAACCATCCTATTTGTAAACCAAGAGTTCCTGATTTCACCCTCCCCACCACTTGCGACCAAAACCGCCTTTGCCACTACTCTTATTTCTACGCGGATGGTACTTTGGCTGAAGGTAGCTTAGTTAGAGAAAAAGTTACCTTCTCTCGGTACCAAAGTACCCCTCCTGTGGCCTTGGGATGCGCTACTGCATCCCAGGACGCTGAGGGTATTTTAGGGATGAACCTTGGACGGTTGTCCTTTGCTTCCCAAGCTAAAATATCTAAATTTTCATATTGCACCCCAAGA | |||||||||
gi|294701284|gb|GW785149.1|GW785149 PBC076G05_09577 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): CGTAATTAGCAAAGGCCTAAAGCCCTAAAGTTGCAGAACAACAACAAAAAGGGTTTAACATCTGTCGGCCGCCTCAGCCAAACCCTCCACCCCCCAGTTCCGCCGTTAAACTTATCTCACACTCCACAGAGTTTGAACAACAACATCATCAACAATCAACATGGAGCACGACAACCAATCAGAACCAGACATTTGCACCTCAATCCTCACCCGCTACAGCACCTCACCCGACCCGACCCACCACCACCTCTGTTCCCTCATCGCCGACATATCCCAAACCCTCAAAGACCTCAACCACCCTCTCACACCCTTATCCTACTTCGCTGCAACTTGCACTTCACTCGACAAATTATTATCTTCTGACCCTAACCCACCAACCCACCACATCGATGCTCTTATTACCATTCTATCCTTGGTCCTTCCCACTATATCCCCTGCTGTTATTCGGAAGCAGTCGGGTTATGTTTCGGGTTTGGTTTCTCGGGTTGTTATGTTAAGTGATGTGGCTGATGGGGTTGTGGTTTCTGGGTTGAAGTGTGTTTCGTGTTTGTTGGTTGTTGGGTGTAATAAGAGTAGTTGGTCTGATGATGTTTCTTGTTTGTTCGGTGTTGTTCTTCGGTTCGTTGCCGATTCTCGTCTCAAGGTAAGAAGACAAGCACATGTTTGTCTCCGTGAT | |||||||||
gi|294697364|gb|GW778701.1|GW778701 PBC005B04_03129 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): ATCACAACCTCATATCATCTTTCAAATCAACTTTTTAACACCTTCAAGTCGATCATGTCTTGCTGCAACGGAAAGTGTGGCTGCGGCTCAAGCTGCTCTTGCGGTAGCGGTTGCAAGGGATGCGGGATGTATCCGGACATCGAGACCTCCACCACCACCACCATGATCGTTGACGGCGTTGCGCCAAAGAAGATGTATGATGATGGAAGTGATGCGAGCTTTGTGAGTGAAGGTGGACACGCCTGCAAGTGTGGACCAAACTGCAAGTGTAATCCTTGCAACTGTTAAAACCAAGATCATTCAAATAAATTAACATCAATCTTTAGATTGTGTCGTATGTTTGTAGGGTTTGAAAAATAAAAAGGACTAAAGCCCTTCTCATGGTACCTCAACCCACTTGAGTGGGTTCAGGTTTGGGTTTGGGTTAGTGTTTTGGTTTGGAGTATGTTATGTTGGTTTCGTGGCTACTATAAATGGTGGTTGTGTGTTAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|294697540|gb|GW778877.1|GW778877 PBC007A12_03305 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): GGCGAAAAAAGGGGATAAAAGAGGGGAATTTGAAGTCAACTGTGGATATATCAGAGGATCTTGATGATGCTTTGAGGAAGATGAATTTAAAGAAAGGGGATTTGCAGTTGGATTTGATTAGAGGGTGTTTGAATAGGCAAATTGAGAAGAAGAAGAAAGGGAAGGAGTCGACGCGTAAAGAGGATATTGTTAAGGAATTGAAGTATGGGAGATTGGAGATATCACAAGATTTACCAGTAGCAGCACCTGTTGTTGTAAATGAAGTTAAAGTTGGGGGTTCTGGTTCGGGTTTGGTGCCTACGAGGTTTTTTAGGTCGAAGAATATTGATCGGATACCGGTAGCCACAATGCAGATTTTACCAAATATAAAAGCCACTGCAAAAGCTGCAACAAAGAAGTGCCATTGGTGTCGGATGTGTAGTTATCGTGTTCTTGTCAAATGCTTGAATTGCAAAAAACACTTGTTTTGTGAAGATTGTATCCGCGCAAGGTCTCATGATAAGGCGGAAGTCAAGAAACAATGCCCTGTTTGCAGTGGAACTTGCAGTTGTAGAGGTTGTGAACGGGGAAAGTCTAAAGAAGTCAAAACCAAGGATCTTGTTGTTTATAGCGGTGAAGGGAAGTTTGACAAAAGTCAACAACTTCTATACATGA | |||||||||
gi|294691161|gb|GW784239.1|GW784239 PBC066F11_08667 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): AAAAAGGAAAATTGGGTTCTTCACTAAAAACAAATTTAAAAACAAAAAGTACCCCAAAAAACAAGCTAAAACCCCCCCCTTTTTGGGGGGGACCTAGTTCCCCCCCATTGAGGCAACCATTTACCACCCAACCCTGCCCGGGAATTTGGTTCCCATTCCGGTTCGGGTTCGGGTTCGGGTTCGGATTCCCCTGACCCTTGTGATCAAAACCCGTCCTGTTGAAAAACTGTTGATCATTAGGATTTGGAAACCCTTGAAGTCCCCAAAAATCCCTTGTTAACCCCTTCCCCTCATTTTTTTTTTTCCCATTTTAATTTCCCAAGAATTGCTTTAAAAAAAAAAAATTTGCTTTTTTGGTGTACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGGGGGCGCCCCCCCCGGGGGGGGCCCCCCCTTTTTTT | |||||||||
gi|294709507|gb|GW776996.1|GW776996 PAB916A09_01424 Parthenium argentatum cold acclimated bark cDNA library (PAB) Parthenium arg CCAAACCCGAACCTGAA-CCTG EST sequence (targeted fragment marked with yellow): AACACACCACTCACTACTCATGGCCACTATACCCACAACCCCTTGTTTCTTCGTGTATTTCGTGTTCATAATAACTTCTGCTTCTTTCTCTATACAAGACACACATGCCCGCAACCCGCGGTTATTAAACAATTCTATTTCCTTCACTCTCACTTATCTTCCACTCTCCCACCGATCCGCTGCAGCTAAAATACGTCCCAGCTCTATTCTAGAACAGGCTTCGGGTTCGGGTTCGGGTTCGGGTTCTAATAACCAGTTATCATTTAAGTATTCGCAGGCCCTGATCGTTTCTCTACCGATCGGGACCCCACCACAGGCCCAACAGATGGTTTTGGATACAGGCAGCCAATTGTCATGGATTCAGTGTCATAACAAAACCCCTACGACGTCGTTTGATCCGACTCGTTCCTCGTCTTTCTCTATCCTCCCTTGTAACCATCCTATTTGTAAACCAAGAGTTCCTGATTTCACCCTCCCCACCACTTGCGACCAAAACCGCCTTTGCCACTACTCTTATTTCTACGCGGATGGTACTTTGGCTGAAGGTAGCTTAGTTAGAGAAAAAGTTACCTTCTCTCGGTACCAAAGTACCCCTCCTGTGGCCTTGGGATGCGCTACTGCATCCCAGGACGCTGAGGGTATTTTAGGGATGAACCTTGGACGGTTGTCCTTTGCTTCCCAAGCTAAAATATCTAAATTTTCATATTGCACCCCAAGA | |||||||||
gi|294709976|gb|GW779903.1|GW779903 PBC018D02_04331 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): ATCTCAAGCCAAGCCAACAAGCCTATCAATTAACGATCACAACCTCATATCATCTTTCAAATCAACTTTTTAACACCTTCAAGTGGATCATGTCTTGCTGCAACGGAAAGTGTGGCTGCGGCTCAAGCTGCTCTTGCGGTAGCGGTTGCAAGGGATGCGGGATGTATCCGGACATCGAGACCTCCACCACCACCACCATGATCGTTGACGGCGTTGTGCCAAAGAAGATGTATGATGATGGAAGTGATGCGAGCTTTGTGAGTGAAGGTGGACACGCCTGCAAGTGTGGAGCAAACTGCAAGTGCAATCCTTGCAACTGTTAAAACCAAGATCATTCAAATAAATTAACATCAATCTTTAGATTGTGTCGTATGTTTGTAGGGTTTGAAAAATAAAAAGGACTAAAGCCCTTCTCATGGTACCTCAACCCACTTGGGTGGGTTCGGGTTCGGGTTCGGGTTTGGGTTAGTGTTTTGGTTTGGAGTACGTTATGTTGGTTTCGTGGCTACTATAAATGGTGGTTGTGTGTTAAAGTAAGTAGTATGATTATGGAGTATTTGAATGTTTTGTTGTGTATTTATGGAGTGGAATAGTGGATGAAATTATGAAGCAAAAAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|294691161|gb|GW784239.1|GW784239 PBC066F11_08667 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): AAAAAGGAAAATTGGGTTCTTCACTAAAAACAAATTTAAAAACAAAAAGTACCCCAAAAAACAAGCTAAAACCCCCCCCTTTTTGGGGGGGACCTAGTTCCCCCCCATTGAGGCAACCATTTACCACCCAACCCTGCCCGGGAATTTGGTTCCCATTCCGGTTCGGGTTCGGGTTCGGGTTCGGATTCCCCTGACCCTTGTGATCAAAACCCGTCCTGTTGAAAAACTGTTGATCATTAGGATTTGGAAACCCTTGAAGTCCCCAAAAATCCCTTGTTAACCCCTTCCCCTCATTTTTTTTTTTCCCATTTTAATTTCCCAAGAATTGCTTTAAAAAAAAAAAATTTGCTTTTTTGGTGTACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTGGGGGCGCCCCCCCCGGGGGGGGCCCCCCCTTTTTTT | |||||||||
gi|294712243|gb|GW780476.1|GW780476 PBC024E04_04904 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): CATCAACATCAGGAGGAGGAGGGACGACGAATCTTTCACAGACCAAAACAATATTTATTAATATTAATAATAATCACATCTATTTGTATTTGTCGGTGGATCATTTCCTTCATCCTCCCTTCCTGTAATAATAATAATAAATTGCCTATAGATGGATGAGTTTGGTGTTTTAGTTGAGAGTATTGGGTTCAAAGCACACGGTAAATCATCCGCCCCCTTGGCCGATTTAAAGAGCTCTAATAAATCTAATGCTACTACTAGTACTAGTACTAGTACTAGTTCTAATGGGTTTCCAATAGATATTGGAATTAATCAATCCAATTCTGATTTTGATTTTGATGTCATGTTTGGGTCTAATACTGGGAACAATAGGAATTTCCCAAACCCTAATTTTGATCATGTGTTTGGGGGTTTTAAGGGTTCGAGTGGTTTGAATAATTATAATGATGTTGATGATGTGTTTGGGTTGATGAAGACTAGCTCAGGATCGGGTTCGGGTTCGGTTGGTCATTATGATGATTTGCTTGGAGGTTTTGGTGGGATGGGGGTTCAAGGGGATAACGCCGCTGGAAATCAAGGAAATGGTTTGAATGTGATCAAGTCCAGTGGGTTGAAAAAGCAGGAAGCTGCTTCGGAACCTGCGGATCTGCTCTCGGGTTTTGGTGTTAAGAGTTCTTCGCTTAATG | |||||||||
gi|294688271|gb|GW786127.1|GW786127 PBC087F11_10555 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): GTCTATCAATTAAGATCACAACCTCATCTTCATCTTTCAAATCAACTTTTTAACACCTTCAAGTCGATTATGTCTTGCTGCAACGGAAAGTGTGGCTGCGGCTCAAGCTGCTCTTGTGGTAGTGGTTGCAAGGGATGCGGGATGTATCCGGACATCGAGACCTCCACCACCACCACCACCATGATCGTTGACGGCGTTGCGCCAAAGAAGATGTATGACGATGGAAGTGATTCGAGCTTTGTGAGTGAAGGTGGACACGCCTGCAAGTGTGGAGCAAACTGCAAGTGTAATCCTTGCAACTGTTAAAACCAAGATCATTCAAATAAATTAACATCAATCTTTAGATTGTGTCGTATGTTTGTAGGGTTTGAAAAATAAAAAGGACTAAAGCCCTTCTCATAGTACCTCAACCCACTTGGGTGGGTTCGGCTTTGGGTTTGGGTTAGGGTTAGGGTTAGTGTTTTGGTTTGGAGTACGTTATGTTGGTTTCATGGCTACTATAAATGGTGGATGTGTGTTAAAGTAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|294701219|gb|GW785084.1|GW785084 PBC076A09_09512 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): CCGTAACAAACCCCTTCCCGGCATAATCTCACCGGCCACTGCTCAACTAACCTGAGATGACAGACCCAAACTTCACCGGAAAACCACTCCCCGTCACCCACCACCGCCGTACCCAATCAGAAACCTTCTTCCCCTTCCCAGATGAAGACACCCTCTTAGACGACGTCGTTTCCCACTTCAATTTCGCCACTATTGACCTCCCCTCCCTCTCCGCCGACTCTCCCACTTCCTCGGACAAAGTCAACCCCGGTCAAACCTCTGTTAAAAAGCCGGTTAACCATCTTAGGAGTCTTTCTGTGGGCTCTGATTTCTTTGATGAGTTGGGGTTTGGTTCGGGTTCGGGTTTGGGTTCGGGTTCGGGTGATGGGGAGTCTGTGTTGATGGTGGTTGATAATTCGAAGAAAGCGGTTGGACCGGATAAGTTGGTTGAGCTCTCGTTGATTGATCCCAAAAGAGCTAAAAGGATTCTGGCGAATAGGCAGTCTGCAGCGCGGTCGAAGGAGAGGAAGACGCGGTACACAAGTGAATTGGAGAAGAAGGTGAAGACACTGCAGACGGAGGCGACTACGCTCTCTGCACAGGTTATGAAGTTGCAGCGGGACACTAGTGACATAACAACTGAAAACAAGGAGCTCAAACTCAAGTTAGAAGCAATGGAACAACATG | |||||||||
gi|294693417|gb|GW781727.1|GW781727 PBC038D12_06155 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG EST sequence (targeted fragment marked with yellow): GTTTGTTGTGCTTAATGTATTTTTTTTTAACTTTTGTGAAGTTTTGATGACTTTTGTCTTTTGGTTCACTAAACAGGTTATTAAATATGGGATATTTAGTGTTTATAAACAGGTATTATCGTGTCTTAACGTGTCTAGCAGGTATAAACAGGTTCGTGTTCAGGTTTGAAAAAATAGACACGATAAGTTAACAGGTCGTGTTCAGGTATACTTGTTTCGTGTTCGTGTCTTATCGTGTTCGTGTCTTAACAGGTCGGGTATACACGATTTGCCAGGCCTACAAGAAATTAACACTTGCTTTTGATGATCTGTATATGTATACGTTACCCTTATGTGCCTTCTCTTTGCATCAGTTAACAGACCTAGATCTCAGTTATGTTGTTATTGACCATCAACCAATATTCAGTGGATTTGGTAGCCTTAGAAACTTACGCTTGTATTATGTAAGCATCTCTACAAAAGCTCTTCTTCATCTGTTATCTAATTGTCCATCACTTAAGAGGTTCACTCTGCTAGGATTTATCGGTTGTAAAGAGTGCACCGTTATTGAGCTATTTGAGTGCCTACCTATGATTGAACATCTGACTATCTATGCGGACAATGCCCAACCGAAGTGGCTTGTTCTAGACTCGGTTCCAGAAGAGCTTTCAACTTCACTAATCCACCTCAAATACTTTTGTTTTAAAGAAATGTCTTTAGATGA | |||||||||
gi|294692178|gb|GW781456.1|GW781456 PBC035E03_05884 Parthenium argentatum cold acclimated bark cDNA library (PBC) Parthenium arg CCAAACCCGAACCTGAACCTG |