| mature miRNA: CCAGACCCAAACAGCTTGGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24069074|gb|BU877550.1|BU877550 V036B04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): AAAAGCATTAGCACAGTCTGGGGTAGCTAAAGAGGATGTGAATTACATTAATGCACATGCTACATCCACACCAGCAGGAGACCTCAAAGAGTATCATGCTCTCATGCATTGTTTTGGCCGTAACTCTGGTTTGAGGGTGAACTCAACGAAATCTATGATTGGTCACTTACTGGGAGCATCTGGTGCTGTGGAAGCCATTGCTGCAGTACAGGCAATACGGACAGGATGGGTTCATCCAAATATCAATCTAGAAAATCCAGAGCAAGGCATGGACACGAGTGTATTAGTGGGCCCAAAGAAAGAGAGACTAGACATCAAGGCTGCACTGTCTAATTCGTTTGGGTTTGGTGGCCACAACTCGTCGATCAGTTTTGCCCCATTCAAGTGAAATAGAGCTTCTCCAAGAGTGTACTGGAATCCTCACTGTATCCTGTTTTCTGCTGAACTTGCTGAAGCTCAATTGACCTTTGAAATGTAACTAGTTGGACATCTGATATCTCGAGGATAGATTGATTAGATGGCTATTTGCCCGGGAAGGGAGAATAGTCAGA | |||||||||
gi|73879617|gb|DT482355.1|DT482355 WS02519.B21_J15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_J15 3', mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): AGGCCAAATCCTGCTGGGAGGGCATCAGGTCTTGGTGGTTTGGGTCTGGGAGGGCCTGGTCTCCCAGGAATGGACAATTTGTTCAATAGCATGCCTGATTCGAATCAAATGACTCAATTGTTGCAAAATCCAGCTGTATCACAGATGATGCAAAGCCTACTCTCCAATCCTGAATATATGAACCAGATGCTCAACTTTAATCCCCAACTACGTGGCATGGTTGATTCAAATCCTCAGTTGAGAGAGATGATGCAAAATCCTGAGCTTCTTCGCCAATTAACTTCTCCTGAAACAATGCAGCAAATGCTAGCTTTACAACAGTCCCTTCTTCCGCAGCTCCGACAGCAGGCTACTCAGGAATCAGCACAGCCTGGCGCCCCTACAGGAACACCTAATAATGCTGGGCTGGACATGTTGATGAACATGTTTGGTGGTCTTGGAGCAGGCAGCTTATTAGTACCTAACCAACCCGATGTACCCCCAGAAGAACTTTATGCAACTCAACTATCACAACTACAAGAAATGGGTTTCTTTGATACCCAAGAGAATATCAGGGCATTGCGGGCTACAGCTGGAAATGTACACGCTGCAGTAGAGCGACTTCTGGGGAATCTTGGCCAATGAGTTGTTTTTGAAAGCAAAACCTTGGAAATGAAAGAAGGGATCTTTCTGAGCAAGGGTTCGTGTTTTTCCATGTTTAAGTCTCTGAAAATGACTATAGCAGAATTGCCGCTGCTAGGACACAAAAGTAGAAAAAACATAAAAAAAAATGTACAAATTGGTATTCTTTCATATGGCAACGGCATTTGATCCTCCTTTTCTTCTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|60701422|gb|DN491288.1|DN491288 UM82TG08.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM82TG08 3', CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): GAGTCATCATCACCAGATGAGCCAGAACCGGTGAGTTCTGTTTCTGATACCTCCCCTGAAGAAGATGTTGCTAGGTGCCTTATGATGCTGTCAAGAGACGTTTGGATGAGAAATATTGAAGAGGAGTATGAAGAACAAGGCGGTAAAGATGGGGAAAGGTCAGTTGAGATGTTGGAGGAAGCAGAGGAGATCAAAGTCAGCAAGATTCGCGGGAAGTTCAGGTGTGAGAAATGCATGAAGCTGTTTCGATCTTCAAGGGCATTGTCTGGTCATAAGAGGATTTGCTCGTTAAATGCAACAGAAGTAAGAAGATTTGCTGGTAGTGCTGATGCCAATGACAGAATTTTTGAATGCCCATATTGTTTCAAGGTGTTTGGGTCTGGACAAGCACTAGGTGGACACAAAAGATCACATCTTATAGGCTCTTCAACTAGTATTAGTGGTGTTGTCGAAGCATCTACTAAACTGGAGAACAATTTGATAGATCTTAACTTGCCTGCTCCAGTGGAAGATGATGAATTTAGTGTGGTCTCTGATGCATGATCCATTGACACTCAATTAGCACGACGAAGAAGTTCATTGTGGGATCTGAGGTTATAATGCCTTGTCTTTTGCAATCCAATCAAGTGGGTGGTTATTTGTAGTTATTATAGACATATACCTTATCTTCTTTC | |||||||||
gi|52393547|gb|CV235210.1|CV235210 WS01218.B21_D07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01218_D07 3', mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): TCCCCGCTTTTTGGGTTTGGGTTGCCAAATTTTGGCCTAGTACAGGTTGGGTTGCCAAAGTTTATGGGGGCCCCAACCTCCCCTGCCCCCTTTTTTCAGTATCCCAGGTTGTTGAAGAACAGGCTGCAACTACTGCTTAAACCCCATCTTTATGTTCCCCGAAGCAAGATTGCTTCCTGGATATGAAAAGTTTCCCCTTTCAGCTTTTTTTATGTAAAACCGTTTTTCATATGCCCCTTTTTATAACGGGGGGAAATTGTTTTTCGAAATACTGTTGGCCAACGGGTTTAAAATCAACGGGTGTTAATTGCCACTTTTAAAACTTTGTTATTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|24071612|gb|BU880088.1|BU880088 UM41TC09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): CCGGGGGTGGGTACTCAAGTCAGGGACGCTTCAAACAATCCTTCAGCCACTGGTTTCTGAAACAACCACAGGGCTTGCTGCTCCTAATACAAACCCTCTGCCCAACCCTTGGAAACAATGCTGCTAGAAGGAACCCAAACAAACTCTACTGCGTGGCCAAATCCTGCTGGGAGGGCATCAGGTCTTGGTGGTTTGGGTCTGGGAGGGCTTGGTCTCCCAGGAATGGACAATTTGTTCAATAGCATGCCTGATTCGAATCAAATGACTCAATTGTTGCAAAATCCAGCTGTATCACAGATGATGCAAAGCCTACTCTCCAATCCTGAATATATGAACCAGATGCTCAACTTTAATCCCCAACTACGTGGCATGGTTGATTCAAATCCTCAGTTGAGAGAGATGATGCAAAATCCTGAGCTTCTTCGCCAATTAACTTCTCCTGAAACAATGCCACAAATGCTAGCTTTACAACAGTCCCTACTTCCGCAGCTCCGACAGCTGGCTACT | |||||||||
gi|73888425|gb|DT491163.1|DT491163 WS02546.C21.1_P17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_P17 3', mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): TGATGCTTATCACATGACTGAGCCGCGTCCTGATGGGGCTGGTGTCATTCTCTGCATAGAAAAGGCATTAGCACAGTCTGGGGTAGCTAAAGAGGATGTGAATTACATTAATGCACATGCTACATCCACACCAGCAGGAGACCTCAAAGAGTATCATGCTCTCATGCATTGTTTTGGCCGTAACTCTGGTTTGAGGGTGAACTCAACGAAATCTATGATTGGTCACTTACTGGGAGCATCTGGTGCTGTGGAAGCCATTGCTGCAGTACAGGCAATACGGACAGGATGGGTTCATCCAAATATCAATCTAGAAAATCCAGAGCAAGGCATGGACACGAGTGTATTAGTGGGCCCAAAGAAAGAGAGACTAGACATCAAGGCTGCACTGTCTAATTCGTTTGGGTTTGGTGGCCACAACTCGTCGATCATTTTTGCCCCATTCAAGTGAAATAGAGCTTCTCCAAGAGTGTACTGGAATCCTCACTGTATCCTGTTTTCTGCTGAACTTGCTGAAGCTCAATTGACCTTTGAAATGTAACTAGTTGGACATCTGATATCTCGAGGATAGATTGATTAGATGGCTATTTGCCCGGGAAGGGAGAATAGTCAGATTTCACCAGGTGCCGACTGGAAATACTCTTTTTTTTTTTTTTTCTGTTGTTTTTATAATCCTCTCTCATAAATAGCCACAGTGGGCCTTGATCTGCTTGTGAGCCATCAATCAACGATCAGAAGTGGCCTTGTTTCCTCTTTGTTCCGTGTACCAAAAAGATAGCTGTAAGGGTATTGCATTAGTTGTCAGTTGTAATGAATTTTTGAGCTAACAATTTGCTACTTTACCGTAGCATAGCGGTGGTTTATGTGCATGCTTCTGTTTTGTTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52385014|gb|CV230975.1|CV230975 WS0193.B21_C21 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_C21 3', mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): GGAGGAGAGGAGATTCAAAATGGATAAAGGGTCATCAACAAAGGAGGAGATACAGGGAGATGTTCTTCAAATCTCTCATAGCCCTTCCATTTTTGTTGAAGCTTTCAATGCTCTTCTCAGGTGTTTGGGACTGGGTACTGTTGATCACCAAAGGATAACCCAAGAAAGCTCATCAACTTCAAGTTCAAAGCAAGAAGATGATGAAAAAGCCTCTGAAGAAAGCCCACAATATCCTCCTCCAACAAGAACTTCAGACCCACAAGCTGATCCTCCCACAGATACCTCTGAAGATCCTTCTACAGATGCAGCAGTAAGTGCTCTTGCGAGGCGGACTCCACCAGTAAGCAGAGGGGGAGGGGGGCAGACTAATACCACCACATCCTAATTCAACATCTCAAGCTCAGAAATCTGACGGCCACACCAAAATGCCAAATTAGCTTTGCTAAAAGTCCATTAATAAAACATCTTCACTGTAGATGACAGGACTAGTCGTATTTATTGTGCGCACTTAGGATTGTGTCTTTCTCTCTCACTAGGGTGGCGAGGATTTGTGGTTGCCATATGGAAAGGTCTGTAAATCTTAAATCTAATACCAAATTCACTGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73887507|gb|DT490245.1|DT490245 WS02544.B21_G24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_G24 3', mRNA sequence CCAGACCCAAACAGCTTGGA EST sequence (targeted fragment marked with yellow): GAACAATGCTGCTGGAGGAACCCAGACAAACTCTACTGCGAGGCCAAATCCTGCTGGGAGGGCATCAGGTCTTGGTGGTTTGGGTCTGGGAGGGCCTGGTCTCCCAGGAATGGACAATTTGTTCAATAGCATGCCTGATTCGAATCAAATGACTCAATTGTTGCAAAATCCAGCTGTATCACAGATGATGCAAAGCCTACTCTCCAATCCTGAATATATGAACCAGATGCTCAACTTTAATCCCCAACTACGTGGCATGGTTGATTCAAATCCTCAGTTGAGAGAGATGATGCAAAATCCTGAGCTTCTTCGCCAATTAACTTCTCCTGAAACAATGCAGCAAATGCTAGCTTTACAACAGTCCCTTCTTCCGCAGCTCCGACAGCAGGCTACTCAGGAATCAGCACAGCCTGGCGCCCCTACAGGAACACCTAATAATGCTGGGCTGGACATGTTGATGAACATGTTTGGTGGTCTTGGAGCAGGCAGCTTATTAGTACCTAACCAACCCGATGAAGAACTTTATGCAACTCAACTATCACAACTACAAGAAATGGGTTTCTTTGATACCCAAGAGAATATCAGGGCATTGCGGGCTACAGCTGGAAATGTACACGCTGCAGTAGAGCGACTTCTGGGGAATCTTGGCCAATGAGTTGTTTTTGAAAGCAAAACCTTGGAAATGAAAGAAGGGATCTTTCTGAGCAAGGGTTCGTGTTTTTCCATGTTTAAGTCTCTGAAAATGACTATAGCAGAATTGCCGCTGCTAGGACACAAAAGCAGAAAAAACATAAAAAAAAATGTACAAATTGGTATTCTTTCATATGGCAACGGCATTTGATCCAAAAAAAAAAAAAAAAAA | |||||||||