| mature miRNA: CCATTTGGAACGTGTAATTTT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30978696|gb|CD235231.1|CD235231 SS1_28_B12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_28_B12_A012 3', mRN CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): GACAAATATTAAATTATCATATACTTTTAGTACAACACCTGAATTAGCCGCTATCAAACAAGATAGCGAGAAAATAAAGCTCTAAACATAGATAAATAATTGCAAAGTTTTTCAAGGTGACGACTGAGCAGCCTTCATTTTTTTTTCACCAAGTTCATCATCATCCGTTCGAAAAGGAGACATCTGGAGCAGCTACATTTGGCCTTTTGTAGATAACAGGGTATTTACCTTCTTCGATGATTTCCTCATCATTTGACAGTCTTGCTCTTAACAGTATTCTGCCACGGGCACATTTGGTGGCATTGAATACTCCAAGCGCTAACAATACATCCACGCCGGAGTCAGGGACAATTCCTTGTTCCAAATGGGCCTTGCTTATATCTAGCAACTTATTCTCCAACTCAACTGCAGTAGCAATGTCTTCACCATTCACGGATAGAATAATATCACCCATCCTAACACCAAGTTTCTCAGCATTAGATTCTGCTGACACCTCTTTAACAATAAGACCGGTATCAACATTAAACTTCCGAGATATCTTCTCTTTACTGACAAGGTTTAAACATTTGATGCCAAAAAGCTTCATCCCAAGATGTATCCGAGGTACATGGCTGTATGTCCTCCAAATCTCCAAACACTTTTGAATGGTTGAAGAAGGTATGAAATGCATGGGAGTAGCTATCATTCCAGTAACATCTCC | |||||||||
gi|34444004|gb|CF431303.1|CF431303 NIT1_5_A07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_5_A07_A002 3' CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): CACAGGAACAAAAAAAATTACACGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAATTGGTGACCAAGTAGTGGAGGAACATAGCCATTTGCAGCTTGGCAAACTCAGCACCAACACATAACCGCAAACCACCCCCAAAGGCCATAAAATCCTTAGAGCCACCAACTGGTTCAGGAGTATCCTTCCATCTCCATGGATTGAATGCCAAGGGGTCCTCGTAAACCTTTGAATTCAGGTGAGCTGCAGATGGACAAATCATGATCTTTGATCCTTCTGGGATAGTGTATCCCTTTATGTGTACGTCCTGGTTTGCTTGTCTGAACACCACCGGAGCGATGTTTGCGAGCCTAAGAGATTCATGTATGACGTGAGATGTGAATTTCATAGACTTGTACTCCTCCCAGGTGATATCAGAGTCTGGATCCACCCTTCTTTCCATGATTTTTTCATGCTC | |||||||||
gi|30975226|gb|CD231761.1|CD231761 SS1_23_G05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_23_G05_A012 5', mRN CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): GTTGTATTGAGCTGACCTGCCGGAGGAGGCAGAGGAGGATAGGGAGGCGATGACGACGGCGAGGAAGGCAGCGTGCGTGCTGGCGGCGTGGGTGCTCGTCGCCGCGGCTCTGTCCGACCTGGGCAGCAAGCCGCAGCGGGAGTCCGACTACTTCGCGCTCTCCCTGCAGTGGCCCGGCACCATCTGCGCCTCCACCCGCCACTGCTGCGCCAGCAACGGCTGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCACGGGCTATGGCCGGACTACGACGACGGGACCTGGCCGTCGTGCTGCCGCCGCACCCAATTCGAGCTGGACAAGATATTGCCACTGATGGAGGTGCTTAATAAGTACTGGCCGTCCCTCTACTGCTCCAAATCTGGAACTTGCTTCAGCGGCAAGGGACTCTTCTGGGCTCACGAGTGGGAGAAGCATGGAACCTGCTCTGCCCCTGTGGTTCAGGATGAACTACAGTATTTCACCATTGCCCTTGACCTCTACTTCAAGTATAACGTTACAGAAATGCTGTCAAGTGGAGGAATACAAGTTTCAAATGGTAAGGGATATGCACTGAGCGATGTCATCGATACCATCAAACATGCTTTTGGGGGATCACCACAAATTGTTTGCAAGAATGGTTCAGTC | |||||||||
gi|33109120|gb|CF072461.1|CF072461 FE1_3_H03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_3_H03_A002 3', mRNA CCATTTGGAACG-TGTAATTTT EST sequence (targeted fragment marked with yellow): CGAGATGAAATTTTATTCAATAATAAACAAGTTTATAAAAGTCCTATTAGACAGCTTCAAATCAAAGCTTAAGCATTGGTCTGAGGTGTGCTCTCGTTCATCAAATCATTGACGAATTGTTGCGCGACAGTAATAGTAGCCATCACGTGATCTCGAGTCACCGTGGCACCTTCACTGTTCGCCAATGATTGGGCCAATCGAATCGTAGTTCGAATTTGACGGCCGCTAATGACAAACTCCGAAAGGCTCTTTGCATCCAATCCAGTGATCTTTGCAGCATTCAACAAGTTGGTCCAGATCTTCTCACGAGCTTCACGATCCAAGTCTTCGTATTTCAAGGCAACGCTAATACGGCTGTGGAACGCTTCGTCGAAGCAACGCACGCGATTGGTGGTCAAAAACAAGACTCCCTGGTGGTACTCCAGCAAACGCAAGAAAATACCGACCATTGCATTACGCACGATGTCGTTCTCTGATCGTCTTTCTAAGAAGATATCAGCCTCATCGATCAAAATGACAGCGTTCCAAGTGGAAGCCAGTTCCAAAATTTCACGCAACTTCTTCTCGAGCTCATCGGTGTTCGTGCCAAGTTCACCAACCGAGACGCTGTACAAAGGTCTGTGCAGCAGTTCTGCGATGGCCTC | |||||||||
gi|160710401|gb|EH407676.1|EH407676 RTHAIR1_14_F04.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_1 CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): CCGACCTGGGCTCCGCCCGCGCACCCCTGGGCAGCAAGCCGCAGCGGGAGTTCGACTACTTCGCGCTCTCCCTGCAGTGGCCCGGCACCATCTGCGCCTCCACCCGCCACTGCTGCGCCAGCAACGGCTGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCACGGGCTATGGCCGGACTACGACGACGGGACCTGGCCGTCGTGCTGCCGCCGCACCCAATTCGAGCTGGACAAGATATTGCCACTGATGGAGGTGCTTAATAAGTACTGGCCGTCCCTCTACTGCTCCAAATCTGGAACTTGCTTCAGCGGCAAGGGACTCTTCTGGGCTCACGAGTGGGAGAAGCATGGAACCTGCTCTGCCCCTGTGGTTCAGGATGAACTACAGTATTTCACCATTGCCCTTGACCTCTACTTCAAGTATAACGTTACAGAAATGCTGTCAAGTGGAGGAATACAAGTTTCAAATGGTAAGGAATATGCACTGAGCGATGTCATCGATACCATCAAACATGCTTTTGGGGGATCACCACAAATTGTTTGCAAGAATGGTTCAGTCC | |||||||||
gi|45963143|gb|CN132798.1|CN132798 OX1_8_G01.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_8_G01_ CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): CTGAAATTTTACTTATTATAATATATTAGCGCAAACAATTACACATATGACCGTACAACATTCAGTATAAAGGTATACAATCTTGGAAAATATGGAAAAACATACTACAACATTTTCTAGTTTTGAACTTCTTTCCTATTCCCCTTCTTCATATTTGGCAGTGACGCTTCAACATTGTAACTTATAGCTTATGCTCCGAGCAGCTTACAATTGGAATAGGTTGATGAGATCCTGAAGAGTTTTATTCTGTTTGCTTTTCTAATGAGGTTTCATAGTACATTTGTTTATATATACTGACCATAACTTACTTATATTGAATGGTCTTTAATTATTTGATCACAGCTACTAATGAGCATACTTTTAATACCACATGCTAGTTATCTTTTCTAACAATATTTGGACCCGTTTGGAACGTAGGAATTTCACTGGAATTCCATAGTTTTTTTAGGATTTATTTTATTTTTTGTAGAAACAACACAGGAACAAAAAAAATTACACGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAATTGGTGACCAAGTAGTGGAGGAACATAGCCATTTGCAGCTTGGCTAACTCAGCACCAACACATAACCGCAAACCACCCCCAAAGGCCATAAAATCCTTAGAGCCACCAACTGGTTCAG | |||||||||
gi|34444407|gb|CF431706.1|CF431706 NIT1_10_G11.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_10_G11_A002 CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): ACAGGAACAAAAAAAATTACACGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAATTGGTGACCAAGTAGTGGAGGAACATAGCCATTTGCAGCTTGGCAAACTCAGCACCAACACATAACCGCAAACCACCCCCAAAGGCCATAAAATCCTTAGAGCCACCAACTGGTTCAGGAGTATCCTTCCATCTCCATGGATTGAATGCCAAGGGGTCCTCGTAAACCTTTGAATTCAGGTGAGCTGCAGATGGACAAATCATGATCTTTGATCCTTCTGGGATAGTGTATCCCTTTATGTGTACGTCCTGGTTTGCTTGTCTGAACACCACCGGAGCGATGTTTGCGAGCCTAAGAGATTCATGTATGACGTGAGATGTGAATTTCATAGACTTGTACTCCTCCCAG | |||||||||
gi|57810431|gb|CX611711.1|CX611711 ANR1_26_F07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_26_F07_A002 3', mRNA sequ CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): TAGTTTTTTTAGGATTTATTTTATTTTTTGTAGAAACAACACAGGAACAAAAAAAAATTACACGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAATTGGTGACCAAGTAGTGGAGGAACATAGCCATTTGCAGCTTGGCAAACTCAGCACCAACACATAACCGCAAACCACCCCCAAAGGCCATAAAATCCTTAGAGCCACCAACTGGTTCAGGAGTATCCTTCCATCTCCATGGATTGAATGCCAAGGGGTCCTCGTAAACCTTTGAATTCAGGTGAGCTGCAGATGGACAAATCATGATCTTTGATCCTTCTGGGATAGTGTATCCCTTTATGTGTACGTCCTGGTTTGCTTGTCTGAACACCACCGGAGCGATGTTTGCGAGCCTAAGAGATTCATGTATGACGTGAGATGTGAATTTCATAGACTTGTACTCCTCCCAGGTGATATCAGAGTCTGGATCCACCCTTCTTTCCATGATTTTTTCATGCTCCTCGGTCAATTCTTGCAAGGATTTTGGATTGTCCGTTAGAAACTTGAGTATCACGGTCAGCCCCATTGACGTCGTTTCATGGCTTGCAAAGAGGAGCAAGAACAATAAGTTCAACGCGATGCTCTCGCTCATTATAGAGTTTGGCTTGTCGAGCTCATCAATCACAAGATCGAAGAAATCCACGGTCTTGCGCTCGGCTCCGTTCCTGCGCTCATCGAGCTGTTGCTTGAG | |||||||||
gi|57820566|gb|CX621779.1|CX621779 GABR1_60_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_6 CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): CAGGAACAAAAAAATTCNCGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAATTGGTGACCAAGTAGTGGAGGAACATAGCCATTTGCAGCTTGGCAAACTCAGCACCAACACATAACCGCAAACCACCCCCAAAGGCCATAAAATCCTTAGAGCCACCAACTGGTTCAGGAGTATCCTTCCATCTCCATGGATTGAATGCCAAGGGGTCCTCGTAAACCTTTGAATTCAGGTGAGCTGCAGATGGACAAATCATGATCTTTGATCCTTCTGGGATAGTGTATCCCTTTATGTGTACCTCCTGGTTTGCTTG | |||||||||
gi|6676239|gb|AW286395.1|AW286395 LG1_332_C01.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): CGTTACAGAAATGCTGTCAAGTGGAGGAATACAAGTTTCAAATGGTAAGGAATATGCACTGAGCGATGTCATCGATACCATCAAACATGCTTTTGGGGGATCACCACAAATTGTTTGCAAGAATGGTTCAGTCCAAGAACTTAGGTTATGCTTCGACAAAGAATTGAAGCCTCGTGATTGTCTTACTACTTCTTTGACGAATGGAAGTGTATCAAAAAGCAAGCACTGCCCACGGTACATCACCTTGCCAACATATGATCCCCTTGTGCTTGCCAATTCAACTGTAGAAATCATGTCACAGTTCGATGAATTTGTGGTGCCTACTGCTCTTTATACAGCCTAAGGTGCAACTATCACAGTGGAGCATTTCTTGGCTGTGATGAAACAAATGTCTTCAGCACCACCGCCGTGGCTGCATCTCTTGCATAATTATGATAGCAGAAGGTGCTTGCGTGAGCACCTAGATCCAGGGAAATTGGTCCCTGGAATATTCAACCATTTGTACATGCACACTTGAAAGAGAATTGTACTTTTTTAACCTGGAAATTTATAAGCTTTATGT | |||||||||
gi|34446006|gb|CF433305.1|CF433305 NIT1_26_A07.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_26_A07_A002 CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): GTTCAATTTGAGGTTCCAATTATTNTGGAAAAAGGAAAATTACAATTCACCACTACTACCTTANGCTGAAATTTTACTTATTATAATATAAAAGCGCAAACAATTACACATATGACCGTACAACATTCAGTATAAAGGTATACAATCTTGGAAAATATGGAAAAACATACTACAACATTTTCTAGTTTTGAACTTCTTTCCTATTCCCCCTCTTCATATTTGGCAGTGACGCTTCAACATTGTAACTTATAGCTTATGCTCCGAGCAGCTTACAATTGGAATAGGTTGATGAGATCCTGAAGAGTTTTATTCTGTTTGCTTTTCTAATGAGGTTTCATAGTACATTTGTTTATATATACTGACCATAACTTACTTATATTGAGTGGTCTTTAATTATTTGATCACAGCTACTAATGAGCATACTTTTAATACCACATGCTAGTTATCTTTTCTAACAATATTTGGACCCGTTTGGAACGTAGGAATTTCACTGGAATTCCATAGTTTTTTTAGGATTTATTTTATTTTTTGTAGAAACAACACAGGAACAAAAAAATTACACGTTCCAAATGGAGCCTTCATGTTTTCTTATGAAGCTGGATGTGAAAGCCGTCCGGAAATCGCAGGCCGGGATAAAGCATCATCGTCCCTTTGCTGAGGGCTTTCCATCTGTAAT | |||||||||
gi|34439801|gb|CF427100.1|CF427100 PH1_3_G05.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_3_G05_A002 5 CCATTTGGAACGTGTAATTTT EST sequence (targeted fragment marked with yellow): GTATTGAGCTGACCTGCCGGAGGAGGCAGAGGAGGATAGGGAGGCGATGACGACGGCGAGGAAGGCAGCGTGCGTGCTGGCGGCGTGGGTGCTCGTCGCCGCGGCTCTGTCCGACCTGGGCTCCGCCCGCGCACCCCTGGGCAGCAAGCCGCAGCGGGAGTTCGACTACTTCGCGCTCTCCCTGCAGTGGCCCGGCACCATCTGCGCCTCCACCCGCCACTGCTGCGCCAGCAACGGCTGCTGCCGCTCGGAGCCGCTCCAGACGTTCACGATCCACGGGCTATGGCCGGACTACGACGACGGGACCTGGCCGTCGTGCTGCCGCCGCACCCAATTCGAGCTGGACAAGATATTGCCACTGATGGAGGTGCTTAATAAGTACTGGCCGTCCCTCTACTGCTCCAAATCTGGAACTTGCTTCAGCGGCAAGGGACTCTTCTGGGCTCACGAGTGGGAGAAGCATGGAACCTGCTCTGCCCCTGTGGTTCAGGATGAACTACAGTATTTCACCATTGCCCTTGACCTCTACTTCAAGTATAACGTTACAGAAATGCTGTCAAGTGGAGGAATACAAGTTTCAAATGGTAAAGAATATGCACTGAGCGATGTCATCGATACCATCAAACATGGCTTTTGGGGGATCACCACAAATTGTTTG | |||||||||