| mature miRNA: CCCAAGTATCTTGGGTTTGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73867332|gb|DT470070.1|DT470070 WS01919.C21_M11 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01919_M11 3', mRNA sequence CCCAAGTATCTTGG-GTTTGG EST sequence (targeted fragment marked with yellow): GTTGCTATGACGCCTTGCCGGAAAACGGCAAGGTGATACTTGTTGAGTGCATTCTTCCCGTGGCTCCTGACACAAGCCTTGCCACCAAGGGAGTCGTTCACATTGATGTTATCATGCTGGCGCACAACCCCGGTGGGAAAGAGAGGACCGAAAAGGAATTTGAGGGCTTAGCTAAGGGAGCTGGCTTTCAAGGTTTTGAAGTGATGTGCTGTGCATTCAACACACATGTCATTGAACTCCGCAAGAACTAAGGCTCAAGTCCAAGCTCCAAGTTACTTGGGGTTTTCCATACAACGTTGCTGCTGTCTCTGCTTTTGATGTTGTGATTGCTTTTTTACATGACGAGTAGCTTTCTCTTATGAAACATGTAAGGTTAAGGTTGCGTTTTGTATGCCTGATTTTCTCAAATAACTTCACTGCCTCCCTCAAAATTCTTAATACATGTGAAAAGATTTCTTATTGGCCTTGTGCTTCAAACAGTAAAGACTTCTGTAACGGAAAAGAAAGCGATTCATGATGTATGTATCTTGCAAGATTATGAGTATTTTTCTAAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73882474|gb|DT485212.1|DT485212 WS02527.B21_J13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_J13 3', mRNA sequence CCCAAGTATCTTGGGTTTGG EST sequence (targeted fragment marked with yellow): GCTTTGTCAGTGTTGACACCCCACCCCACCCGACCCGACCCGACCCGACCCATGGATCTTCTTAATCAGTTGCAGAGACAGTATACCGATTTCACTACCCTTCTCTATCATGAGGGTTTTGTGGACGATCAGTTCACTCAGTTGCAAAAGCTGCAAGATGAGAGCAGCCCTGATTTTGTGGTGGAGGTTGTGTCTCTCTTCTTTGAAGATTGTGAAAAGCTTGTTAACAATATGGCCAAAGCCTTAGAACAGCAGGACGTTGACTTCAAACAGGTGGATTCTCATGTCCATCAACTGAAAGGTAGTAGCTCCAGCATAGGTGCAGCAAGAATTAAAAATGTCTGCATTGCCTTCAAAACTTTTTGTGAAGCCCAAAACCGTGAAGGGTGTTTGAGATGTCTGCAACAAGTGAATCATGAACACACTCAATTGAAGACCAATCTTCAATCTTTATTCACGCTGGAGCGACAGATTGTGGCAAATGGGGGGTCAATTCCTGTGATGCAATAAGTAATGTTGATATAATCTCCTTTCGACACAAATTGAAAGGTGAAAGTTAATGTTACAGATACAGTTGTAAGTTCAAGATACTTGGGAGTTCTTTGAAATTTGTATGATAGAGGGGTATGTTAATTGACTTTTATATATCTGCTGCCACAAAGCATATAACTTTTGCCCCCTTTTAGGGGTGTTTAGGAAAGTGATAGAAGTTAATTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52374819|gb|CV225945.1|CV225945 WS0162.B21_N11 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_N11 3', mRNA sequence CCCAAGTATCTTGGGTTTGG EST sequence (targeted fragment marked with yellow): GGTCTCTTTGCATTTAGTAATACCCCCCCTTCACTCATTTCTCTTTCTCTCTCAGCTTTATTTCAATTGGCAATGGAGATAATGTCTCCCAGATCAGCCTCAACCTTAAATCCCAACGCTTCGCTATTTGTTCCGCTGTCGTATTGAACAGTGGAGGATTTTTCCGGCCCATGGTGGGCCCTTGTCCCGTCCTCCCCTTGGTTTCGGGACTACTGGCTTGAAGAACGTTTTTATGATTCCGAATTTGAGCCCTCCTTTTTTGATATTTTCGATTTTTTCCTTTCCGAAGATTTTTTCTTTTTTTTTTTTGGCGGCCCCATTTTCGGCCCTATCAAAGGGGGGGGGGGGGGGAAGGGATGCCACCAGGAATTGGTTTCGCTTGGTGTGATGAAGTGGAAAAAGGGTCGAGTTGATTGTGCTCCGGCCCCGAGGTATTTGGGGAAGGCCCCCCAGATAGTGAGTGGGAAGCTGAGTCCCAGGGCGGTTCAGCCACCGAAGTAGAGTTGTGTGGCTTGGCAAGTTTGAGGATAACCCCGTTGGTTGTTTTGTATAGAATCCCTTTTTGGCTTTGAATTTTGTTCTCGCTGTTTTTTTTTTTTGGGTTTTTCCTGTTTTTGGGTAGAAAGAAAAAAAAAAGCGCTTTGTAGAATTTTAGCTTTTTTTGGGAATAATAAAGCAAATGAAATCATAAGCCTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||