| mature miRNA: CCCACGGCTTTCTTGAGCTTG species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|242332389|gb|DV973631.2|DV973631 GQ02771.B3_D10 GQ027: Mature Somatic EMBRYOS Picea glauca cDNA clone GQ02771_D10 5', mRNA se CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): GTTTCGTAGAGGCTGTGAGAGGAGGAAGATCGAAGAAAATCTTTTGTTGTGGGCTTCCCGAGCTATCTGGGCGTACGTTAAACCCTGGGCCAAAGTTGGAGACGATTGGCTGATTTTCAGGCAATTTCGAGCGCGCAGATCGATTCCTGAGGTTCGACTCAGGGGGACCAGAGTGAATTCACGCCCGGCCGCGGCCGCTATGCCTCGTTTAAATATAAATGTCCGCTGCATTATCTTCATCGGCCCTGCTTTTGGGATTTTCTGCATTTTGAATGCCAATTTACTGCAGGATCACAGGTAGAAGGTACTGGATCTTCTTCTGTGGTTGCATGTGACGGGATCGAGTGTCTCGCCTCCTCTGTTTGTTTTTGGGAAAAATAATTTTGTAAACTCGAAATTGAGGGTCCAGGGTTTGAGTTCCGGGCGGAGAATGCAAATGCTGGAGTCTACAGGTTTTCCACCGGTGGTCGGCTCTCCGTGTGGTGAAGAAAGCGGGGAGGAAGAGCTGACCGTGTTGCCAAGGCATACGAAAGTTATGGTGACTGGAAATAATCGAACGAAATCCGTTCTGGTTGGGCTTCGTGGCGTGGTCAAGAAGGCCGTGGGCCTCGGTGGCTGGCATTGGCTGGTACTGACAAATGGGGAGGAGGTGAAGCTCCAGCGAAATGCACTAAGTGTGATTGAACCACCAACTGGACATGAAGATAATGGGGAAAATGGATGTGAAAATGTGATGTCGAGTAGCTCAGAATTAGTTTCAGATGATT | |||||||||
gi|211894184|gb|DV975705.2|DV975705 GQ0065.TB_C15 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0065_C15 CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): AACGAAATCCGTTCTGGTTGGGCTTCGTGGCGTGGTCAAGAAGGCCGTGGGCCTCGGTGGCTGGCATTGGCTGGTACTGACAAATGGGGAGGAGGTGAAGCTCCAGCGAAATGCACTAAGTGTGATTGAACCACCAACTGGACATGAAGATAATGGGGAAAATGGATGTGAAAATGTGATGTCGAGTAGCTCAGAATTAGTTTCAGATGATTTTCAGAAGTCTCACAAGCCTAAATTGCAACATCACAAGTTAGTTGTATCTGTGCCTAAAGGTGCAACTAGAAATCATTTTAGTGATTCACAATCAACTGAATCAAAATCGTCTTCACATGGGATGCTGACGGTGGATTTGAGCAAATTGGAAACAGCAGCTCTATGGAGATATTGGAGGCACTTTAATCTTGCTGATGTGAGTTTGAACTCATCAAAGGAGCAGCTGGTTAATGCTGTGGAAAAGCACTTTATATCAGAGCAATTGGATGAGTTGCAGGTTATTGCTGGATTTGTGCAGGCCGCTAAGCGACTGAAGAGAGTTTGTGCTTAAAATTCATGTAATAGAAAGGGGATCTGTCAGTAATACATGTGCTCACTTTGTTAGGAGGGCATGGTTGACTGTGAATTGTATAATATGTACTTTTCAACTAACAGATGAATGCTCTAACGCTAAGCTCTGTAATGTGTCTTAACAGTAGTCATAGGTTTTTCTGTAGTGCTTTTACAAAGCTTATTCTGATTAGTGCTTAACAAGCTAGCATGGCGCACGAGCATCCTAAACATGCAAGCTTTGAGTTTGTAGAAGTGGACATTTCTAGAGTTGGATGTACAAAGCTACTTTTGGTTGTATTGTCATCCCCATGAACAACTGTTTGATGGAGATGTTTTTTTTAAAA | |||||||||
gi|211894438|gb|CO487263.2|CO487263 GQ0225.B7_J01 GQ022: ROOT XYLEM - mature trees Picea glauca cDNA clone GQ0225_J01 3', mRNA s CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): ATCCATTTTATCCTTTGAGGAGCTTGGGGTTTGGGCTTGATCAGCTGTTCGATAATCCTTTTCTTGCCGCGTCTCGCGGGACAGGGGATGCTGTTCGAGGCGGGTCGAGAAAGCCGTGGGATGCAGTGGAAGACAAGGAAGCTCTGCATCTGCGGGTGGACATGCCGGGTCTGGGGAAGGAAGACATTAAGGTTTATGCGGAGGAGAACGCGCTGGTGATAAAGGGGGAATCCGTCTCAGACGCAGAGTTGGACGGCAGTGCACGGAAGTACAGCAGCCGCATCGAACTTCCTCCGAAAGTGTACAAGCTCGACCATATCAAAGCCCAGATGAAGAATGGCGTACTCAAAGTTACTGTTCCCAAGTTCACAGAACAGGAAATCAAGAATGTGATAAACGTGAATATCGAGTAGGGGTTTTGTATTCAAACTGAACTGTGGAAGTTTTATCTTTTATTTGTTTTCGTTGTGTACTATAAAACACAATGCAGAGAATATAAAAGTGGAAAGACAGTTTTGAGGTAAACTTCTGTCAGTTTTGTAAAAGGGTAAAACAGCTGTGGCACCCCAGATTTTCAATGTTAGAGGATTTCGGCTTTTGAGGGGGGGC | |||||||||
gi|211894877|gb|CO478361.2|CO478361 GQ0173.TB_J05 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0173_J05 3', mRNA se CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): TCAACAGCTGCAGCGAAATACAGGCCTGAGTACGATTCGGCGATTCAGGATGACAAACAAAACCGCCAGGCTTCGGAGACCCGCCGCGGGGGTTTGCCTAGTATTTTTGGGGATCCATTTTATCCTTTGAGGAGCTTGGGGTTTGGGCTTGATCAGCTGTTCGATAATCCTTTTCTTGCCGCGTCTCGCGGGACAGGGGATGCTGTTCGAGGCGGGTCGAGAAAGCCGTGGGATGCGGTGGAAGACAAGGAAGCTCTGCATCTGCGGGTGGACATGCCGGGTCTGGGAAAGGAAGACATTAAGGTTTATGCGGAGGAGAACGCGCTGGTGATAAAGGGGGAATCCGTCTCAGACGCAGAGTTGGACGGCAGTGCACGGAAGTACAGCAGCCGCATCGAACTTCCTCCGAAAGTGTACAAGCTCGACCATATCAAAGCCCAGATGAAGAATGGCGTCCTCAAAGTTACTGTTCCCAAGTTCACAGAACAGGAAATCAAGAATGTTATAAACGTGAATATCGAGTAGGGGTTTTGTATTCGAACAGAACTGTGGAAGTTTTGTCTTTTATTTATTTTCATTGTGTACTATGTTCGGTAAGAGTAGGTCTCTCTGCATTCTATAAAATACAATGCAGAGAATATAAAAGTGGGAAGACAGTTTTGAGGTAAAATTCTGTCAGTTTTGTTTCGATGTAAAACAGCTGTGGCACCCAGATTTTCAATTTAGAGGAT | |||||||||
gi|211902247|gb|CO481346.2|CO481346 GQ0166.B7_N18 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): GGTAGAATTTTTCTTTACCAATATATCTTATGAGGACACCACAAGTTCGAGCAGATGGGTTTTAAATATTATTAGGTTTAATAGCGACGGGACTTTCACTTTTCGTATGAGTGAACCTGGTTGCATCCAATGTTGGGTCCAGCTGAGCACGACCAATCTCGTGAGCTGCTCAGAACCCCGTCCAAGTTCACCATAATCCTGATGGCCATCGCCTGGTTCTTGTGCAGTTTTCCGGGAAGAAGGTGTCGGATCGGATGACTGCATGGATTTCATCATCTGTAATGGGCGTTCTTGTGCAATAATTGCTTGCGAAAATTTCGTTGTTATGAGTCTTCTGTGGTGATAATAATGGCGATAACACAGCAGGAGAGAGTATAAGGACCATAGAAGTTAAAGATATTCGATGGATGGCCCTCCTTCTGCATAAGGAAAGAGAGACGAGTCCTTTCGGGTACAGTTGAAGAATTGGGGAAGCTTTGGGCCATTAGAGCGATAAAGAATTGGGGAAGAATATTTATTTATCAGTACGCTAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTATTGCTTCTGCTGTGATCCGACTTGGTACTTCAGTTTCCAGATACGTAATATAACCCTATTCCAGGCACTCGGACAAGGTATCTTTACGTAAAAAA | |||||||||
gi|211903312|gb|CO472813.2|CO472813 GQ0049.B3_I03 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clone CCCACGGCTTTCTTGAGCTTG EST sequence (targeted fragment marked with yellow): GTGAAATACAGGCCTGAGTACGATTCGGCGATTCAGGATGACAAACAAGATCGCCAGGCTTCGGAGACCCGCCGCGGGGGTTTGCCTAATATTTTTGGGGATCCATTTTATCCTTTGAGGAGCTTGGGGTTTGGGCTTGATCAGCTGTTCGATAATCCTTTTCTTGCCGCGTCTCGCGGGACAGGGGATGCTGTTCGAGGCGGGTCGAGAAAGCCGTGGGATGCAGTGGAGACAAGGAAGCTCTGCATCTGCGGGTGGACATGCCGGGTCTGGGGAAGGAAGACATTAAGGTTTATGCGGAGGAGAACGCGCTGGTGACAAAGGGGGAATCCGTCTCAGACGCAGAGTTGGACGGCAGTGCACGGAAGTACAGCAGCCGCATCGAACTTCCTCCGAAAGTGTACAAGCTCGACCATATCAAAGCCCAGATGAAGAATGGCGTCCTCAAAGTTACTGTTCCCAAGTTCACAGAACAGGAAATCAAGAATGTGATAAACGTGAATATCGAGTAGGGGTTTTGTATTCAAACTGAACTGTGGAAGTTTTATCTTTTATTTATTTTCATCGTGTACTATGTTCGGTAAGAGTCGGTCTCTCTGCATTCTATAAAATACAATGCAGAGAATATAAAAGTGTGAAGACAGTTTTGAGGTAAAATTCTGTCAGTTTTGTTTCGATGTAAAACAGCTGTGGCACCCCAGAATTTCA | |||||||||