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mature miRNA: CCCGCCTTGCATCAAATGAAT
species: Arachis duranensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|296573180|gb|GW954019.1|GW954019 Dur25.seed.ADAA-aab78d12.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CCCGCCTTGCATCAAATGAAT
 ||.|||||||| ||||||||
TGGTGGAACGTACTTTACTTA

EST sequence (targeted fragment marked with yellow):
GCCCATGTGGAAGAGGCATTCATTTCATGCAAGGTGGTCAAAGATGTAAAAGTTGATGTCCAACTGAAGGAAAAGGCAAAGAAGAAGTTGCTTGAATTTGAGGACTATGTTTATGGTTTGCTCAAGAATTATGAAGTGTCATCAGATATTTTCTTGAGGGACAGTAGTTACATGACTTGGTGGAATGAGTATGAGAAAATTGATGGAGCAGTTTCTCATTCAAAACTAGGAAGGTTCATGAGCAATGCTAATAATTATAATGTGAAGTATGTCAAGGGAACTTATAATTTCAACTGAAGTATGTCTCTCTAATTAAGGCATTTGGTTAATTAGTCATTAGTGTGATTGAAAGAAAGTGAGAATTGGGTGTTCCAATAAATGTATTGTAAAAAACTCAAAATGTTTATTTTATTATTGCAAAATTTCTATTCGAG


gi|296568614|gb|GW952301.1|GW952301 Dur25.seed.ADAA-aab57g12.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CCCGCCTTGCATCAAATGAAT
 ||.|||||||| ||||||||
TGGTGGAACGTACTTTACTTA

EST sequence (targeted fragment marked with yellow):
ACTAATTATAGGAGAATGGTCGAGCCCCTTGAGATTGCCAACTACTATTATTCAAATGAGGGCTACAAAAAATTTCCGAAAAGCTATTTTGAAACAAGGTCTAAACATTATAAGCAGCTAGAAGAGTGGCTAAAAGAAGGAACAGCAGCAGCAAGCAATTCCAACAGCACAGGCACAAGGAATGTGGAATCCATTTTAACCTTTGATTCTTGCTTTTGGGCCCATGTGGAAGAGGCATTCATTTCATGCAAGGTGGTCAAAGATGTAAAAGTTGATGTCCAACTGAAGGAAAAGGCAAAGAAGAAGTTGCTTGAATTTGAGGACTATGTTTATGGTTTGCTCAAGAATTATGAAGTGTCATCAGATATTTTCTTGAGGGACAGTAGTTACATGACTTGGTG


gi|296545953|gb|GW925701.1|GW925701 Dur25.root.ADAA-aad98h05.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CCCGCCTTGCATCAAATGAAT
 ||.|||||||| ||||||||
TGGTGGAACGTACTTTACTTA

EST sequence (targeted fragment marked with yellow):
ACTAATTATAGGAGAATGGTCGAGCCCCTTGAGATTGCCAACTACTATTATTCAAATGAGGGCTACAAAAAATTTCCGAAAAGCTATTTTGAAACAAGGTCTAAACATTATAAGCAGCTAGAAGAGTGGCTAAAAGAAGGAACAGCAGCAGCAAGCAATTCCAACAGCACAGGCACAAGGAATGTGGAATCCATTTTAACCTTTGATTCTTGCTTTTGGGCCCATGTGGAGGAGGCATTCATTTCATGCAAGGTGGTCAAAGATGTAAAAGTTGATGTCCAACTGAAGGAAAAGGCAAAGAAGAAGTTGCTTGAATTTGAGGACTATGTTTATGGTTTGCTCAAGAATTATGAAGTGTCATCAGATATTTTCTTGAGGGACAGTAGTTACATGACTTGGTGGAATGAGTATGGGAAAATTGATGGAGCAGTTTCTCATTCAAAACTAGGAAGGTTCATGAGCAATGCTAATAATTATAATGTGAAGCATGTCAAGGGAACTTATAATTTCAACTGAAGTATGTCTCTCTAATTAAGGCATTTGGTTAATTAGTCATTAGTGTGATTGAAAGAAAGTGAGAATTGGGTGTTTCCATAAATGTATTTGTAAAAACTCAAAATGTTTATTTTATTATTGCAAAATTTCTAT