| mature miRNA: CCCGCCTTGCATCAACTGAAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18017389|gb|BI136461.1|BI136461 F068P66Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CCCGCCTTGCATCAACTGAAT EST sequence (targeted fragment marked with yellow): AAGCAGCTAGTTGATGCGAGGCGGGGAGAAGAAGCTACTACCAATCGGAAAGCGATTCATTCTCTCTGATCTTAATATTTCTCAAGACTTGCTTTTCTTACTGTTGTGGAGAGCTAATAGCTCTGGGTTTGAAGGAGGCATTCCTTTTCTGCGCATAAGATGTACTTCTGGTCATCATCGTACCGGGATGCAGATCTTGAATTGGTTTTTATATATCAATGGACTGCAAGAAGTTCATGC | |||||||||
gi|73870020|gb|DT472758.1|DT472758 WS01227.BR.1_N09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_N09 5', mRNA sequence CCCGCCTTGCATCAACTGAAT EST sequence (targeted fragment marked with yellow): GATAAAAAAGATTTCTCTTTTTAAGAGTTCATACCTTCTTGTATTGATTTGTCTGTGAATTCATTGTGATCTCTCAGCAAATAAAACAACAATGTCAACCGAGAAGGAGAGGGAGACTCATGTTTACATGGCCAAGCTCGCTGAACAGGCCGAGCGCTATGACGAGATGGTTGAGAGCATGAAAAATGTTGCCAAACTTAATTGTGACCTGACTGTGGAGGAGAGGAACCTCCTCTCGGTGGGATACAAAAATGTAATTGGTGCGAGGCGGGCTTCTTGGCGGATCATGTCTTCAATTGAGCAGAAGGAAGAATCTAAAGGAAACGACAGCAATGTTAAACTGATTAAGGGATACCGCCAGAAGGTGGAGGAGGAACTCTCCAAGATTTGCAATGACATCTTGTCCATCATCGATGACCATCTGATCCCCTCTTCCGCCTCAGGAGAAGCAACCGTGTTCTACTACAAGATGAAAGGTGACTACTACCGCTATCTAGCTGAGTTCAAGGCTGATCAGGAAAGGAAGGACGCAGCCGATCAGTCATTAAAGGGTTACGAGGCTGCTTCTGCCACTGCAAGCACAGATCTGCCTTCAACCCACCCAATTCGTCTTGGCCTTGCCCTTAACTTCTCTGTTTTCTACTATGAGATCATGAACTCTCCTGAGAGGGCCTGCCATCTGGCCAAACAAGCTTTCGACGAGGCAATTGCAGAGTTGGACACTTTAAGTGAGGAATCATACAAGGACAGCACCTTAATTATGCAGTTGTTAAGAGATAACCTCACTCTCTGGACTTCTGATTTGCCTGAAGATGGAGGTGATGATGACTTCAAAGGTGAAGAATCAAAGGAAAAA | |||||||||