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mature miRNA: CCCGCCTTGCATCAACTGAAT
species: Vigna unguiculata
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|190491942|gb|FG883282.1|FG883282 UCRVU07_CCNP15265_b1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vig

CCCGCCTTGCATCAACTGAAT
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GGGTGGAACGTAGTTGAGCAA

EST sequence (targeted fragment marked with yellow):
ATTCTGTGGCGGTAACATGCCTGTGAATCCACTCTTGGCCCTGTTTCAAAACTTTGAGCAAGTCTCAAATTTTGTTCAGCATCATATCTCTAATTTCATAGGTCCTCATCTTCAGTCATCAGGGCTCCCTGGTAGTGGCTTTCTCTTGTCTGTATCCTCCTCCACTAAAGCTCCACTTGCGAAAACTACATCTTCTGTACAGCTTGGTGATACCGCTGTCAAGGTAAAATCTACAACCCCAGCGCCTAAGGAAGAGCTTGGAAGGGCTACTTGGACTTTACTTCACACTCTAGCAGCTCAGTATCCAGATAAGCCTACAGGACAGCAAAAGAAGGATGTAAAAGAATTGGTACATATCTTATCTCGAATGTATCCATGCAGAGAATGTGCAGATCATTTTAAAGAAATTCTTAGAGCAAATCCTGTACAGACTGGGTCACATGCTGAATTTTCTCAGTGGTTGTGTCATGTTCACAATGTTGTTAATAGAAGCCTTGGCAAACCAGTATTCCCCTGTGAACGAGTTGATGCAAGGTGGGGCAAACTAGAATGCGAACAGAAAGCCTGTGAAATTATTGGAAGTACATCATTTTTTGGGAAGATACAATAGGAATCTATTTGAAAATTATAACTTATATATACGAGGTATGTACTAAATTTGGCCTTTTGGGAGCATGTTTGTCAATGAATATNTTTTTATACGGCATTTATAGGTTG