mature miRNA: CCGATGCAGCATCATCAAGAT species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|52528275|gb|CV275300.1|CV275300 WS0176.B21_A02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides cDNA clone WS0176_A02 3', CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): CAGGAGCTTTGGCATTTTACATACTCTCTGCTCTTTTTTTTAATAGCTTTGTCATCATTTTTGTGGTGACTGTGCTTCTTGCTGCTCTTGATTTTTGGGTGGTCAAGAATGTGAGTGGTCGGATNTTAGTTGGCCTTAGGTGGTGGAATGAGATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAATCCCTTGACCAAGAGTCATTAGCCCGAATGAACAAGAAAGACTCATGGCTGTTCTGGTGGACTCTTTACATAACAGCGGTCGCCTGGATTGTGCTTGGAATTTTCTCTCTCATAAGGTTCCAAGCAGATTACTGCCTCATTGTTGGAGTATGTTTGACCCTCAGCATTGCGAACATTGTTGGCTTCACCAAATGTCGCAAAGATGCTAAGAAGCAGTTCCAGCAGTTTGCATCGCAGACCATTGCATCTCGAGTGTCATCTACCATACAGTCAGCATTCAGTGTTGTGTGATTCATTCATTACAGAAGGTGGCGCATATAACCGAAGTCGTGCACTTGTGCAAGAGATGTTGAAAATTGGTGGGGGAAGCATACAGACATGGTGATGTTGCATCGGTTGATTTTTTGAACTTCCAGTAGGATACAGTTTAGATGTTTTGTTGACCTCTCAGACACCTAATCATTTGTGCAATGAATTAAGAAAAACGATAGTGTTACAGAAATAATTTTGCTGTTGAGTGTAATTATTGCCATGTTTTTAGCTCTCTTCAGTAAAGCAGTCTTAACAGCCTTCAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|73933169|gb|DT516479.1|DT516479 WS02431.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02431_I1 CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): CCTACTGTTGGACTAAATATTGGTCGTATTGAAGTGGCAAATTCAAAACTGGTGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAGAAATATTACGAAGAGGCACATGCTGTGATTTATGTAATTGATGCTGCTTGCCCATCACGTTTTGAAGATGCAAAATCTGCGTTGGAAAAGGTTCTTAGGCACGATGATCTGCAGGGAGCCCCCCTTTTGATATTAGCAAACAAGCAGGATCTTACTGATGCTGCATCAGCAGAAGAGCTTGCTCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATTTTCGAAGCTGTTTCAGCATATGATGGGATGGGGATCAAAGAAAGTGTAGAATGGCTCGTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCTGGTGTAACTGGCCCTGGTGCTTAGAGACTGTCCAATGCAGTTGTTTCTCCTGCTTTTTGTAGCAGCTGTAAATAAACAGAGATTGGATTTGATTTTACATGACAGAGTCCATCCATTTTTCAATCTCCCCTGCAGCAGCACACCTTCTTATCTACTATGCCCAGTGCCTGTTTTTTGACTGCTAAATGTTCAGAAGATACTTTAATTCTATCCTTACACTGCAATGGAGCAAGTCAGGGGAGGGAGGACACTCCATATCTGCTAAGAATGACCAAAGGTTGTTGGTGCATTATGTTACTGCATTTGCCTTTTGAAATGCTTTTACTACCAAAATTTAAAATAGCCGAGGTGCATTAATGTCCTCATATAAAGGTATTAGAGGAGTTCAAGATATCAATTGTTCCATTTTACCAAAGAAGTCTAATTATTGTTCATAAATTGAAACCCACAAGATGTTCTTAACAGATTCAAGTTCACGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73903121|gb|DT505859.1|DT505859 WS01812.C21_A19 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides cDNA clone WS01812_A19 CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): ATAAGGAGCGGTTTGGAGAGCTAAAAAATATGCACAGCTGCTTTACATTTGCTGGTGATGAGGATTTTCTCAAAAATGACATTCGTGGGAAGTCAGATCTTGATGCTCTCGGTGCTCTCGGTGATGCGGGCTGGTATGGTATCAGGTCAATTCTCTGGGCCGTTGACTATGAACTGCCGAAAACTGTAACAGCGTTGCCTGGGCCTGTTTTAAATGAAGCAGGGGTTATTTTGTCTTGTGGTGCTGCTCTGCATTGGGAAGATGGGAAAGTGGCAACTTTCCATTGCTCTTTTCTGGCTCATTTGACAATGGATATTACTGCTATTGGAACAGCGGGGACTTTGCATCTCAATGATTTCATAATTCCTTTTGGAGAGAAGGAAGCGTCGTTCACAACAGTTTCAAAATCTGGGTTCACAGATCTGGTGACAGGTTGGGTGCCTGTGCCAAGCCAGCACACTGTTACCACAGATCTCCCCCAGGAAGCTTGCATGGTGACAGAATTTGCCCGCTTGGTTGGAAATATTAAAGCAAATGGCGCAAAACCCGATCCAAAGTGGCCGAGTATAAGCAGGAAGACACAGCTTATACTGGATGCTGTCACGACGTCAATTGCCCAAGGTTCAAAGCCTGTTGAGATTTAATCAAGACATATCTTGCTGGTGCTGCTTCGTTTCATTGGACTGGACTCTATCTATTGTCAAATAACACAATTGCCATTTTGTCCATTTCTTTGCAAATGAGATTTGTGGCATGGGAATGTCTGTAACAGTATTTGATGATTGCTTGATGTGTCTTTTTTAAAAAATGCGGCTTCAAGCTTTGATTGTGATTTCAAATGAAATCCACATGATAGATTTTCATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52531832|gb|CV278857.1|CV278857 WS0147.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0147_K09 3', CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): TCAACCAAGCTTGCACTCTTCCTCTCATTCTAGTTTTTTTTTTTAAATAATATTCTTATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAATCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTTTGATTTACCAAAGTACTGAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTTTTTTCTTTCTTTCTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAACGGGTTTTGTCTTGTTATAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTCCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGTGATGTTAAGAGTTAAATCTTTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGCAAAAAAAAA | |||||||||
gi|73901464|gb|DT504202.1|DT504202 WS01312.B21_G18 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS01312_G18 CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): TGTTTTGGGATCTAGGAGGTCAGCCTGGTCTTCGCTCAATTTGGGAGAAATATTACGAAGAGGCACATGCTGTGATTTATGTAATTGATGCTGCTTGCCCATCACGTTTTGAAGATGCAAAATCTGCGTTGGAAAAGGTTCTTAGGCACGATGATCTGCAGGGAGCCCCTCTTTTGATATTAGCAAACAAGCAGGATCTTACTGATGCTGCATCAGCAGAAGAGCTTGCTCGATATCTAGACCTTAAGAAGTTGGATGAAAGGGTTTACATTTTCGAAGCTGTTTCAGCATATGATGGGATGGGGATCAAAGAAAGTGTAGAATGGCTCGTGGAGGTAATGGAACGAAGCAAGAGAACTGAGATGTTAAGAGCTCGTGCTGGTGTAACTGGCCCTGGTGCTTAGAGACTGTCCAATGCAGTTGTTTCTCCTGCTTTTTGTAGCAGCTGTAAATAAACAGAGATTGGATTTGATTTTACATGACAGAGTCCATCCATTTTTCAATCTCCCCTGCAGCAGCACACCTTCTTATCTACTATGCCCAGTGCCTGTTTTTTGACTGCTAAATGTTCAGAAGATACTTTAATTCTATCCTTACACTGCAATGGAGCAAGTCAGAGGAGGGAGGACACTCCATATCTGCTAAGAATGACCAAGGTTGTTGGTGCATTGTGTTACTGCATTTGCCTTTTGAAATGCTTTTACTACCAAATTTAAAAGAGCCGAGGTGCATTAATGTCCTCATATAAAGGTATTAGAGGAGTTCAAGATATCAATTGTTCCATTTTACCAAAGAATTCTAATTATTGTTCATACATTGAAACCCACAAGATGTTCTTAACAGATTCAAGTTCATGGAATGTGTGCCTTGTTGGCTTGTTCTATCCAAAAAAAAAAAAAAAA |