| mature miRNA: CCGATGCAGCATCATCAAGAT species: Populus trichocarpa x Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73938686|gb|DT521996.1|DT521996 WS02035.B21_M11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02035_M11 3', CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): TCGCCAGCCCGTACATGTGTGGTTTACTATAGAGTCGAAGAAAGCGAAGAGAGCCATGATGATGATGATGAGATGGGCTTGAATGAGATATTAGCTGCTGATGTTATACCAGAGCAAGAGGATGTTGAAGAAGCTGCCAGTCAGGCTAAGGTCGGAAAACCGCACTTGGTGGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTAGTGGACTTAGCAAGACAGTAAACTTTGAAGTTGAAGATTTTGGGGATGATGCATCGGATGATTAAGAATCTTCATCCAACATCGGATTACACCTCTTAATTTTCACCATAAGAATAACTAGGTTTATATGAGGCCTCCTCGATCATTCTGAAGAGATTTGTATGGCTCTTGTACAGTTGTACAAGTAGGCTGCTGTAAATAAATAAGATTGCTCTTAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|73938479|gb|DT521789.1|DT521789 WS02035.B21_D18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02035_D18 3', CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): TCCTTTCATTCTAGTTTTTTTTTTAATAATATTCTCATAAAGGTTTGATGAGCTGATGTAGCTAAAAGAAGTGAAAAAACCAAATGGGTTCTCTTTCTTTTTATGTGATCTTCGCCGGAAGCTGACATGAGGTGGTACTTGCTATATGTTAGTCTCACCACACACAACCAGAGGGAGTGTGTTTTTGTCAGAATCTCGCCGGATAAATAAATCTGATCCACTTAACTAAAAATCTATGATTTCCCAAAGTACTAAAACTCGTTAGTTCTTGATTCCATTTATTAGATTTTCTTTCTTTCTTTTTCTCATCTGATATAAAAAAATATTATTATATTTTTAATGTTGAAAAAGGGTTTTGTCTTGTTTTAAAGTTCTGAGTTAAACAAGGTTGTAGGATTCTTTCTCGGGCATCCCCTTCACGTATTGCCTTTTGGCCTTAACCAATGGCAACATGCCACATCAGCTCCTTGCTCGTGGGTTTGTTGGTTTGCATATGTGCTGTCCAATATTTCTTTGTTTTTCTCAATTTTTTTCCTTACAAGAATTTGCTAGATATATATTATATGTTTGCTTAATTTCAATCTTGAAACCTTGTAGAGAGGAGGTAAAAAGATGGGGCATGGAATTGAAGGCTAAAGGGGTCTTGTGCATGGAAATATTGACAATCGTTGTTTGCGGGTGGAGCATCATCAAGATTCACATGCAAATGCACGGCCGGAGATGTTAGAGTTAAATCTCTCTTTGTTTCTGTTCATCTGCCAAAGTTCTTTGGAAGTGAGAATCTTGATGATGCTGCATCGGCAATAAACGACTATACAACACAAAAGGACTTGGAAAAAAAAAAAAAAAAAA | |||||||||