| mature miRNA: CCGATGCAGCATCATCAAGAT species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215524102|gb|CU610628.1|CU610628 CU610628 SEFERMI_B_KZ0AAM Theobroma cacao cDNA clone KZ0AAM6YJ05FM1, mRNA sequence CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): GGGTGCATTGAGAAGAGAAGTAGAACAAACAGCAACAATATTTGCAAACTTGATGGCTGCTCGAAGGCTATCCTCTCTGCTCTCTCTTTCTTCTTCTGCTACTGCTGCAACTTCTTTAGGTTCTTTTGGGCGATTTTCTAGATGGGGAAGAGGAATCAATAGCTTCAGTACCTCTGCTGCAATTGATGAACCTATCAGTCCATCTATTTTAATAGATCATACTCAGCTCCTCATCAATGGACAATTTGTTGATGCTGCATCAGGGAAAACCTTCCCCACCCTTGATCCTAGGACAGGAGATGTGATTGCCCATGTTGCAGAAGGTGATGCTGAAGATGTCAATCGTGCAGTGGCTGCAGCTCGCAAAGCATTTGACGAAGGGCCGTGGCCTAAACTAACTGCTTATGAAAGATCGCGTATCATGTTTCGTTTTGCGGATTTGCTTGAGAAACACACTGAAGAGGTAGCCACACTTGAAACTTGGGATAATGGAAAACCTTATGAGCAGGCTGCTAAAATTGAGATACCAAAGGTTGTACGTATGTTCCGATATTATGCTGGCTGGGCAGACAAGATTCATGGACTCACTGTTCCAGCTGATGGACAGCATCATGTCCAAACACTGCATGAACCATATGGTGTAACTGGTCTAATTATTCCATGGAATTTTCCTCTTCTGTTGTATTCTTGGAAAGTTGTCCCTGCTTTAGCTTGTGGGAACACAGCTGTCCT | |||||||||
gi|211977973|gb|CU476739.1|CU476739 CU476739 COPHAS_KZ0AAL Theobroma cacao cDNA clone KZ0AAL1YG19RM1, mRNA sequence CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): CGGGACTATCTAATTAGGATGCTTAGATATGTCCGTGGTCGAAGAAACCACAAATTTCATGAAGTTGGTCCATCCACAGATTTGAATGTCAAGTCTAGGTACAAAAGTCCTGTTTTTTTAATCTTGAGAATCTGGTACTGCTTGCCATTTGCTGACATGGTTGCTCATCATAAGAAGAAATTCCAGACTGCTGTTCGACCGTATTGAAGGCGGCCCACATTTTGAATGTTGTAATGTTGTTTTGAGCATATAATTGTTTGACCAAAGAGGCAAAAAAAAAAAGAAAGGTGAAAGGAACGGAGAAAAAAGAAGAAGAAAGGATTGGAATTTATAAATAGTGAATTGTGGTAACTTGTAAGAACATGTTGATGATGTTGCATCGACCCATTTGTAGAGATGGTTTCTTGCAAATTGCTTGAAAAAAAAAAAAAAAA | |||||||||
gi|215535764|gb|CU603217.1|CU603217 CU603217 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG7YM06FM1, mRNA sequence CCGATGCAGCATCATCAAGAT EST sequence (targeted fragment marked with yellow): CGGGGCATTGAGAAGAGAAGTAGAACAAACAGCAACAATATTTGCAAACTTGATGGCTGCTCGAAGGCTATCCTCTCTGCTCTCTCTTTCTTCTTCTGCTACTGCTGCAACTTCTTTAGGTTCTTTTGGGCGATTTTCTAGATGGGGAAGAGGAATCAATAGCTTCAGTACCTCTGCTGCAATTGATGAACCTATCAGTCCATCTATTTTAATAGATCATACTCAGCTCCTCATCAATGGACAATTTGTTGATGCTGCATCAGGGAAAACCTTCCCTACCCTTGATCCTAGGACAGGAGATGTGATTGCCCATGTTGCAGAAGGTGATGCTGAAGATGTCAATCGTGCAGTGGCTGCAGCTCGCAAAGCATTTGACGAAGGGCCGTGGCCTAAACTAACTGCTTATGAAAGATCGCGTATCATGTTTCGTTTTGCGGATTTGCTTGAGAAACACACTGAAGAGGTAGCCACACTTGAAACTTGGGATAATGGAAAACCTTATGAGCAGGCTGCTAAAATTGAGATACCAAAGGTTGTACGTATGTTCCGATATTATGCTGGCTGGGCAGACAAGATTCATGGATTCACTGTTCCAGCTGATGGACAGCATCATGTCCAAACACTGCATGAACCATATGGTGTAACTGGTCTAATTATTCCATGGAATTTTCCTCTTCTGTTGTAT | |||||||||