| mature miRNA: CCGGACCAGGCTTCATCCCAG species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21825243|gb|BQ699927.1|BQ699927 NXRV131_E07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV131_E07 5' simil CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): GAATGCATCTGTGGCTGCCACAGACACAAGCTGTGAGTCTGTGGTAACTAGTGGTCAGCACCAACATAATCCAACACCTCAGCATCCCCCAAGAGATGCTAGCCCCGCTGGACTCCTGTCTATAGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTAAAGGAGCTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGATTGGTATTGTAGCTATTTCGAATACTTGTAATGGAGTAGCTGCACGTGCTTGCGGTCTTGTAGGATTAGATCCTACAAAGGTTGCAGAGATTCTTAAAGATCGCCCATCTTGGCTTCGTGATTGTCGTTGCCTTGATGTCTTGACTGCGTTTCCTACTGGAAATGGTGGAACAATCGAGCTTTTATACATGCAGACATATGCGGCCACTACTTTAGCTTCTGCTAGAGACTTCTGGACTCTGAGATACACAACAGTGTTGGAAGNNGGCAGTCTTGTGGGTTNNGAAAGGTCCTTGAGTGGTACTCNNNGTGGTCNANNNATACCGCCAGTGCAG | |||||||||
gi|30356689|gb|CD018039.1|CD018039 NXCI_163_A10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda cDNA clone NXCI_163_A10 CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): ACATAATCCAACACCTCAGCATCCCCCAAGAGATGCTAGCCCCGCTGGACTCCTGTCTATAGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTAAAGGAGCTGCTGTCGATTGGGTCCNNATGCCTGGGATGAAGCCTGGTCCGGATTCGATTGGTATTGTNNNTATTTCGAATACTTGTAATGGAG | |||||||||
gi|58027233|gb|CX713974.1|CX713974 RTPQ1_15_G12.g1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_15_G12_A032 5', CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): CATTTTATTTACCAGCAGATCTCCACTTCTACTTCCACTTCCACATCCAGATCGAAACTCTGCTAACATTCCTGATGACTCTATTCTGCTATTGGTGAGGAATGACTGTGACTGTGGTGACAGCGCAATCTTTTGGAATGGAAGCGGGCAAGTACGTTCGGTACACTGCAGAGCAGGTGGAAGCTCTGGAACGCCTTTACAATGACTGCCCAAAGCCCAGCTCTCTGCGTCGCCAGCAGCTCATCAGAGAATGCCCAATCCTTTCACACATCGAGCCGAAGCAAATCAAAGTCTGGTTCCAGAATCGAAGATGTAGAGAGAAACAACGCAAGGAGGCAAGTCGTCTCCAGACTGTCAACAGAAAGCTCACAGCCATGAATAAGCTTCTTATGGAGGAGAACGATCGCCTTCAGAAGCAAGTCTCGCAGTTGGTTTACGAGAATGGCTATTTCAGACAGCAGATACAGACTGTTTCTATTACCACCACAGATACTAGCTGTGAGTCTGTTGTTACTAGCGGTCCGCATCCGCACCACCTCACACCCCAGCATCCCCCAAGGGATGCTAGCCCCGCTGGATTCCTGTCTATTGCAGAGGAGACTTTGACGCAGTTTCTTTCAAAGGCTACAGAGACTGCTGTTGATTGGATCCAGATGCCCGGGATGAAGCCTGGTCCGGATTCTATAGGCATTGTGACTATTTCTAACAGTTGCACTGGAGTTGCTGCACGAGCTTGTGGCTTTGCAGGTCTCGAACCTTCAAAGGTCGCAGATATTCTTAAAGATCGTCCCGCTTGGCTTCATGATTGT | |||||||||
gi|21827099|gb|BQ701783.1|BQ701783 NXSI_120_E07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_120_E07 5' sim CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): CAAGGAAGCTTCTCGTCTCCAGGCTGTGAACAGAAAGCTTTCTGCCATGAACAAGCTGTTAATGGGGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGTTGGTCTACGAGAATGGATATTTCAGGCAGCAGTTGCAGAATGCCTCCATAGCAACTACAGACACTAGCTGTGAGTCTGTGGTTACAAGTGTTAAACATCAACAGCAAAATCACCTGACGCCCCGGGATCCCCCCAGGGATGCTAGCCCTGCTGGACTCCTTTCTATTGCAGAGGAGACTTTAACAGAGTTTCTTTCAAAGGCTAAAGGAAATGCTGTTGAGTGGANNCAGATGCCTGGGATGAAGCCTGGTCCGGATGCTATTGGAATTGTCACTATTTCACATGGGTGTACTGGAGTNNCTGCACGAGCTTGTTCTCTTGTTGNTATAGNCCCTACAAANNNNGCAGAGATTCTCAAAGATNGCACATCTTGGCTTCGGGATTGCCGAAGTGTGGATGTTCTTACTGCTTTCTCAACTGGANATNNNNNNNCAATTGAGCTTTTATACATGCAT | |||||||||
gi|48936389|gb|CO165848.1|CO165848 FLD1_57_B08.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_57_B08_A029 5', mRNA sequence CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): GCCCAAGCAAATCAAAGTCTGGTTTCAAAACCGCAGGTGTAGGGAGAAGCAGCGCAAGGAAGCTTCTCGTCTCCAGGCTGTGAACAGAAAGCTTTCTGCCATGAACAAGCTGTTAATGGAGGAGAATGACCGCTTGCAGAAACAAGTCTCGCAGTTGGTCTACGAGAATGGATATTTCAGGCAGCAGGTTGCAGAATGCCTCCATAGCAACTACAGACACTAGCTGTGAGTCTGTGGTTACAAGTGTTAAACATCAACAGCAAAATCACCTGACGCCCCGGGATCTCCCCAGGGATGCTAGCCCTGCTGGACTCCTTTCTATTGCAGAGGAGACTTTAACAGAGTTTCTTTCAAAGGCTAAAGGAAATGCTGTTGAGTGGATCCAGATGCCTGGGATGAAGCCTGGTCCGGATGCTATTGGAATTGTCACTATTTCACATGGGTGTACTGGAGTAGCTGCACGAGCTTGTTCTCTTGTTGGTATAGACCCTACAAAGGTTGCAGAGATTCTCAAAGATCGCACATCTTGGCTTCGGGATTGCCGAAGTGTGGATGTTCTTACTGCTTTCTCAACTGGAAATGGAGGAACAATTGAGCTTTTATACATGCAGATGTATGCGCCAACTACTTTAGCTTCCGCCCGAGATTTCTGGACTCTTAGATACACTTCTGTATTGGAAGATGGTAGTCTTGTGGTTTGCGAGAGATCCTTGAGTGGAACTCAGGGAGGTCCCAGCATGCCCGCGGTGCAGCAGTTTGTTAGAGCAGATATGCAACCCAGTGGATATTTGATTCGGCCATGTGAAGGTGGAGGATCTCTAATTCATATTGTTGACCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTGCTACGTCCTCTGTATGAATCATC | |||||||||
gi|21825120|gb|BQ699804.1|BQ699804 NXRV129_F06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV129_F06 5' simil CCGGACCAGGCTTCATCCCAG EST sequence (targeted fragment marked with yellow): TTCAAAGCTAAAGAGCTGCTGTCGATTGGGTCCNNATGCCTGGGATGAAGCCTGGTCCGGATTCGATTGGTATTGTAGCTATTTCGAATACTTGTAATGGAGTAGCTGCACGTGCTTGCGGTCTTGTAGGATTAGATCCTACAAAGGTTGCAGAGATTCTTAAAGATCGCCCATCTTGGCTTCGTGATTGTCGTTGCCTTGATGTCTTGACTGCGTTTCCTACTGGAAATGGTGGAACAATCGAGCTTTTATACATGCAGACATATGCGGCCACTACTTTAGCTTCTGCTAGAGACTTCTGGACTCTGAGATACACAACAGTGTTGGAAGATGGCAGTCTTGTGGTTTGTGAANGGTCCTTGAGTGGTACTCNNGGTGGTGCAAGCATACCGCCAGTGCAACATTTTGTGAGAGCAGAAATGCTTCCCAGTGGATATTTGATACAACCTTGCGANNNTGGTGGTTCCATAATCCGAATTGTTGATCACATGGATCTAGNNNNNTGGAGTGTGCCCTGAGNNTTGCGACNNCTATATGAATCGTCCACTNTNCNNGCC | |||||||||