| mature miRNA: CCGGATCCGAGTTCGGGTTCC species: Solanum torvum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|261724689|gb|FS121961.1|FS121961 FS121961 library TVR Solanum torvum cDNA clone TVR30C03 3', mRNA sequence CCGGATCCGAGTTCGGGTTCC EST sequence (targeted fragment marked with yellow): CTGAATCCATGCGTAATATGCAGATTGGGATGGCGAGGGGTGGTATGCGTGCTATGCGAATGGGTTCTCCTGGGTTTTGTTCACCCCGGAGCCCATCGATACTCCGGCCCGGGTTCATGAGCCTGCCAACAACTCCGACCCGGAGTGGACTCTCGGTGTTCGATCAGAATTGTGAAGAAGAGCCAGCAATGGAGAGGGTAGAATCTGGAAGGGATCTCCGAGCAAGGATTTATGCTAAACTAAGCATGGAGAACTCTTTTGACTCGGGTGCTCCGGATGTTGGATGGGTTTCCGAACTGCTGAAATGAATCCGGGCTCGGGTTCGGGTTATGATGTCCTTTTCTTGGTTTTGCTGATGATGGATTTCCAGATCTGAGGCCTCTGATTTTTGTAAATACTGAAGATTATTGGTGTAAATACTACTTAGGAACAATTTGGGCTGGAGAGATTAGCCTATTAATCTCTATTTTGTCGTTTTGCTTATTTGGGTATTTTTATTAAGGCAAGAGAGAGTTTGAATATTTTGTACATAAGAAAAAGATCCAGGGACAAGGGATCTTTCTTTATTGCAGGGGCTGCAGATGTATGTATGGATTATCGGTTTTTTAAC | |||||||||
gi|261682443|gb|FS120837.1|FS120837 FS120837 library TVR Solanum torvum cDNA clone TVR28B23 3', mRNA sequence CCGGATCCGAGTTCGGGTTCC EST sequence (targeted fragment marked with yellow): CTCACACGCCGGAACAACTCCGTGTTCTCCCTCAGAACAGCCCGAGAAGCCATGCCGAATCGTGTGACTCGTTCGACGGCTCTCCGAGTCGGCTCGGGTTCGAATATTTCTCGACGTCTCCGCCGTTTGACTCGCCTCCGATGACTCCTCGTGGTGTTAATGGGCTGGCTGAATCCATGCGTAATATGCAGATTGGGATGGCGAGGGGTGGTATGCGTGCTATGCAAATGGGTTCTCCTGGGTTTTGTTCACCCCGGAGCCCATCGATACCCCGGCCCGGGTTAATGAGCCTGCCAACAACTCCGACCCGGAGTGGACTCTCGGTGTTCGATCAGAATTGTGAAGAAGAGCCGGCAATGGAGAGGGTAGAATCTGGAAGGGATCTCCGAGCAAGGATTTATGCTAAACTAAGCATGGAGAACTCTTTTGACTCGGGTGCTCCGGATGTTGGATGGGTTTCCGAACTGCTGAAATGAATCCGGGCTCGGGTTCGGGTTATGATGTCCTTTTCTTGGTTTCGCTGATGATGGATTTCCAGATCTGAGGCCTCTGATTTTTGTAAATACTGAAGATTATTGGTGTAAATACTACTTAGGTACAATTTGGGCTG | |||||||||
gi|261730890|gb|FS106340.1|FS106340 FS106340 library TVR Solanum torvum cDNA clone TVR03G05 3', mRNA sequence CCGGATCCGAGTTCGGGTTCC EST sequence (targeted fragment marked with yellow): TTCCCAGAAAAAAGTTTTTCATTAGCGAAGCTCAAAGAAAAAATGGCAGGAACCCTAGTAATCTTCACCATTATTCCTCTCATGTTCGCCGTCTCTGTATCCTCTACAAACCCGGACCCGAACGGGAACCCGAACTCGGATCCGGCACCATCGAGGGCACACAAGGAGCTAATCAGATTCGGGTTCCCCATTGGTCTACTTCCCAAAAACGTTAATGGGTATTCTCTAAATTCCAGTTCCGGCGAGTTTCTGGTTTCTCTGCGTGAAAAGTGTAAAATCACTCTTCCTCCGGACAACTACCTTGCGACGTATTCGAAGAAAATTAGAGGTAAAATTGTTGAGAATCGTATTGCGGAGCTTGATGGGATTAGTGTGAGGGCTTTTTTTAAGTGGTGGGGTATAACAGGAATCAGATCTAGTGGTGAGAATTTGGTTTTTGAGGTTGGAATGGTTACTGCTAAATACCCTTTTAAGAATTTCAATGAAAGTCCTGATTGTGAAGGGAAAAAGCATTTCTCTTCCTGAGGTATTATTTTTTTTTTAATCTATTTTGTTTGATTCTAATAAAGTTGTTTCCTTTTTTGC | |||||||||