| mature miRNA: CCGGTTGATAACACCAACCGG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG | |||||||||
gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG | |||||||||
gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT | |||||||||
gi|58685944|gb|CK074631.1|CK074631 68310rsicem_10332.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGAATTCGGCACGAGGGGTAGATATCTACCACACATACTTTGGAGTTGCAGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGCGCTGCCGCTGGATGTTGTCAACCGGATTTTCTTGAGAAAAGAACATTAGCATCTGCACGCTCCACAGATCATGCTGTGTAACATGGACAGGAACACGTGGTTTACTTGAAAGATCTGAAAATCATCCCCATGGAAGAACGAATGCAGCATCAAATTCAAGTGGTAACTAGAATATGTTGTCAGGATATCGCGACCAAGCTTTCTTGAGAGTTGAGAGTCAACACCGACTTCACACTCAACAGCATGCTTGTACTAACTGAAGTTGTACTGTTCTACGCAACGGCAAGCAATATTTTTTTTGTTTATTAATTTTGAGACCGCGCGGTAAACAATTCTCTTGTAGTTGTATATTTCA | |||||||||
gi|66927267|gb|CX114115.1|CX114115 EI085N23 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): TAGTGATTAGTATTACTGGGTAAAGCATTACTCTTTTTTTTTTTTTGTTCATACACCACCCTCCAAAGTTTTATCTACATCCAACATGTGGAATGTGACATTTTGAAATTAATTTCACGTTCATTTTTATCCAAAAGGACACATATTTTGAATAATAACGCATGTGCTACTAGTCGTAGACGTGGAATGCACAATACATAATAATTAAATATTCAAAATTTATGAGCCAATATTACGTATTAACAAATAGATCTCTTCCAGGCACTACACATAGAAAATATTGAAAACACTGGTGGAGAAACCATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGGTTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCCAGTTCTAAAGGTTAGAGCTACTTTTTGATCTTTAGTCTGGGTTGGTAACATCAATCGAGACTAAAGATCATTTTTAGTCTTGGTTTAAAAGACGGCAGGTGGTGTCAGACTCCTCCTTTATCTTTAGTCACGGTTGGTGTTACCAACCGGGAAAAAAGATCGACATGCACGGTGCGAGATCGAGAGGACCGAGGCGCACGGGAGGATCAGTTAATAAGTTCCGACCTTTATCTCCTCCTCTCCGAACTCACCCCATCTCTTCCTCTTCCTCCTCTCCACACTCACTCCCATCTCTTCCTCTTCCTCCTCTCATCTCTTCCTCTGATCCGTCTCCTTCCCTCTNCCTCCCAATTCTCAATCTCCTCTGGATCCAACCCTCCCGTCTCCACCCGAATTCTCAAGAAGCGGCGGCCGG | |||||||||
gi|88694009|gb|CI738047.1|CI738047 CI738047 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): GGTGGATTTGGGATGTTAATTTGATTTGGGATTTGGGGATATGCATGCCACTTAATTCGGGAGAAAATAAAAAAGAAAAAAAAGAAAGATGACCATCTGTACTGCTGTTATTCCCTCTTTAGTCTCGGTTGGTAGACCTTATCTTTAGTTCCGGTTGGAGTTACCAACCGGGACTAAAGATCGATCTTTTGTCCCGGTTATTTCACCCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGTCCGGGGTTACGAACCGGGACTAAAAAGCATTTCTCCACCAGTGATGGAAAAGTTAAAGTTCGGAGAACTGGGCCAAGCAGCATATGGAGGCGTCGTC | |||||||||
gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA | |||||||||
gi|29624641|gb|CB629652.1|CB629652 OSIIEb06B02.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06B02 5', mRNA sequence CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): TGGAGGAAGAGGCGTAGAGATAAGGCTGCCCGTTTCCTCCTCCTCCTCGATCTCGTAGATGGCAGATGCCTCGTACTCTCCGCCACGATCTTTTGTTCTGGTTGGTAATACCAACCGGGACTAAAGATAGTAGGCATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTAAAAATAGCCAACGGGGACTAAAGATTAAAAAGCAGCTCTAAACTTTTGAACTGGGGCTAAAGATAATCTTTAATCCCGGTTTTTATTGCAACCGGGACTATCGTGGATTTTGGCCGACTGAGCAAATATGGTTTCTCCACCAGTGTAAATTCGGAACGTAACTTTTAATTTAGAAGTGAAGATATTATTAGCTTTACAGCACGGCATCAGCGAAATGACAGCAATATTAGTTTTATCAAGGCGAAATCGTACAAGTTATTGGGGTATCTATTTGTAAACTGGATTATCTTTTATATATTATCTACCAGTCACTTTTTAACTTCTAAATAACAATATTTACGTGCCAAACTTTTTTTTCGGATGAGACACATATACTGTGTTATAACTTTTTATTTTTTTAAAAAAAATACACTTCAGTGTAGATCTTACGAACATTAACAACTTATAATATATTTAGATTAATCCAGTAGAAGTATGGTAATGAAAATTAAAAGTCATACTAAATGTGTAGTTTTTCGGATTGTACAGTTCAGTTGAGTCGGTTAAGAAAAAAATTGAAGCAATTAATTGATAGATATATAGAGTGATTGCCATGTGCTTTGCCATCTCAGTGCATGCTGATTCATACGCCAATATCTAACTGATCGTCGGCATGCTGGACCAAT | |||||||||
gi|58597243|gb|CK007771.1|CK007771 27941rsicef_4037.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): GCACGAGGCGGGAGGCGATGCGGCCACACTGAGAGCCATCGCAGCCGTGAAGATGGCTGGGAAGGTGTGGAGCAAAGTGCCGCTGCATTGGTCTGGGGCTACGAGACGGGATGAAGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCGTGAGTTGAAATTATCTCGCCGCAGGTACGAGAGCGTCGGGTAGTATTCCACCGCCGGCAACGGCCGCTTCGCTAGGGGAACATAGCCGGAGGTTTTAGCACAACCGCCGGACAAGTGGCGACATTCGTGTTCTTCCTCGCCCATATGCTGCACTGATTAAAGAAGAACACCGACGAGCTGTTCTTCATTTCTTCATCCCGTCGATGTCCGGGATGCGGAACAGCTCGCCGCTGATAGTGTTGCAGATGAAGCGCTTGCACTGGTGGAGAAACCTTTTGTAGTCCCGGTTCGTAACCCCCTTTAGTCCCGGTTGGTGTTACCAACCGGAACTAAAGATCGATCTGACCTTTTTTTTTTCATGGCCCTGTTGCTGCATGGTTTATATATATATATATATATATATATATA | |||||||||
gi|117252131|gb|CT844316.1|CT844316 CT844316 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): TTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAGAAGTGCTTTTTAGTCCCGGTTTGTAACCCCCCTTTAATCTTGGTTGTCCAACCGGGACTACGAATCCGGGACTAAAAATAGCGATCTTTAGTCCCGTTTGGAGTTACCAACCGGGACTAAAGAGGGAATAACAGCAGTACAGATGGTCCTCTTTCCTTTTTTTTTCTTTTTTATTTTCTCCCGAATCAAGTGGCATGCATATCCCTAAATCCCAAATCAAATTAACATCCCAAATCCACATCACAAATATTTAAGTTACTTATACACATAAATCAAATACATCGCAAATCCTAAAAAAAAATTACACAAATCAAATTACATCACAAGTTCTACAAAATTCATCGCAAATACATCACAAGTTCACATCGCACACAAATCAAATACATCACAGAATCATGCAATAAATCACAAATTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|86902827|gb|CI312204.1|CI312204 CI312204 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): AAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATCCAAATACATCACAAAATCTTAAAAAAAATTACATCACAACTTCTACAAAATTCATCACAATACATCACATATTCACATCACACACAAATCAAATACACAGATCCGAATCATAAATTCTAAAAAAAAGAAAAAAAAGCCTGCTCCCACGCCGCCCGCCGCCGCGAGGCCTCCGGCCGCCCGGCCCTCCGCGCTGCCCGGCCGCCCGGCTCATCCATCATAGTGGGGATGATGGGGGAGGGAAAGGAGGAGAGGAGTTAAAAGGAGAGAAGGAAGAGGAAGAGATAAGGTTAGAGAGGAAGAGATAAGGCCACCCGTCTCCTCCTCNATCTTGCACATGCCTTGTACTNTTNGCCGNGCATGCCGATCTTTTGTTTCGGGTGATGTTACCAACCGGGACTAGAAATAGATCTTTAGTCTCGATTGNTGTAATAAAANATCTTTTAACACCCAACCCGANGANT | |||||||||
gi|163928936|gb|EG709764.1|EG709764 Os5MPREST1446 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-F1B11SA, mRNA CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): CGGCCGGGGGCGGATGCCTCCCGCAGTTCCAAGCGGCCGCGCCGTCGTCGCCTCATCGTCCGCCGCGGCGGCGGAGATGGGGAATTTCTGAGCTAGGGTTAAGTCTAGTGAATCACCCACATATGCCCACATTAACACAAAACGAGCCCAATGGGCCTACGATTCAGTGGAGAGTGCCCCAGCAGCGAGTGCCCTGTCTTCGCCCATCGCCTGACGCCGCACTTCGCCTCTGCGCCTGACTGCCGTCAGCGGCCTGCCGGAGTTGGAGGTGGAGGGTGTTGGTACGAGCGGGCGGCGCCATACCTCGCCCTACCGAGTCCTCTGCAACTGTTCATAACCCTTTGTAGTCCCAGTTTTTCAACCGGGACTACGAATCCGGGACTAAAGATCGTTATCTTTAGTCCCGGGTGAAATAACCGGGAGTAAAAATCCATTTTTAGTCCCAATTGGTGTTATCAATCGAGACTAAAGATAGAGCATTTTTAGTCCCGGTTGGAAATAGAGTTAGGCTAGCTAGATACGG | |||||||||
gi|88483895|gb|CI421166.1|CI421166 CI421166 Oryza sativa (japonica cultivar-group) 4th leaf leaf 1mM ACC(1-aminocyclopropane-1-c CCGGTTGATAACACCAACCGG EST sequence (targeted fragment marked with yellow): GTTGGTAAGATCATTTTTTTTGTCCCGCTTCAAAAAGTTGATAGGCCGTGTCAGGCCCCAAGGATCTTTAGTCCCGATTGGTATTATAAACCGGAATTAAATATCATCACTTTAGTCCCGATTGGTAGCACCAACTGGGACTACAAATCCGAAAAAACACGCCGGGTCGCACGTGTGCGCCTCCCCGCCCTTATCTCCTCGATATCTCCACGCCTTTTTAAGTCATTTGCGTCTCCTCCTCTCCCTCCAGATGCGTCCTCCCCTACCCTTCCTCCTCCTCCTCCCCCTCCCCTCCCCTCTCTGTCGGCGACGGCGTGACCAGGAGGGGGAGACGCGGCGCCAGCTGCGGTGGGGGAGGGGGCAGCGGCCCCGTCGGCGAGGTCTGTGAAAATTAATAGGTATGTGGAAAAAAAAA | |||||||||