| mature miRNA: CCGGTTGGTAACACCAACCGGGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89198071|gb|CI117549.1|CI117549 CI117549 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): GAGATATGTCTCCCACNTTGATTGGGAGAAAATAAAAAAGAAAAAGGGGATCATCTCACTACCGCAACCCTCTCTTTAGTCCCGTTGGCCCCTCTCTTTAGTCCCGATTGGTGTTGCTAACCGGGACTAAAGATCTATTTTTAGTTCCGGGTATTTGAACCGGGAATAAAGATAGCGATTTTTAGTCCCGGATTGGTAGTCCTGGTTAACCGGGACTACAGGGGGTTGCGAACCGTGACTAAAAATATTTCTCCACCAGTGGTTGTAACAATATTGCAAAATGTACTGTACTTATTACATGGTCATCATCGTGGGCAACACCAGTCCAGAGCCTCTGAACTTGCTCTCGGTAATCTCGTCGATCCTTGTGGCCATCTCCGGCGACAGGTAGTTCGGCCAGCCCCCGACGACGCCTCGCCGGAAGAACTCGGCGTTCCGCATCGGCTCCTCCATCAGCTCAATCGTCCCTGACCTGTTCACCTCCGCGCCCGCTAGGCTCTCGAAGCTGCACGCCTTC | |||||||||
gi|58656711|gb|CK045391.1|CK045391 42857siceh_0522.z1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gro CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): TATAGTCCCGGTTTCCTAACGGGACTACAATCTAGGACTAAAGATAGCTATCTTTAGTCCCGGGCGAAATAACCGGGAGTAAAGATCTATCTTTAGTCCCAGTTGATAACATCAACCGGGACTAAAGAGAGGGATCTTTAGTCCCGGTTGGTGTTACCAACCAGGACTAAAGAGAGGATAGGGACAATCCCGGATGGTCCTTTTTTTTGTTACTTTTTTATTTTCTTCCGAATCGGATGGCATGCACATCCCAAATCAAACCACAAATCCCAAATAAAGTAACATCTCAAATCCACATCACAAATCCCAAATCCACATCACAAATCTTAAAATTACTTATACACACAAATCTAAAACATCACAAATCCTAAAAAATTTACGCACAAATCAAATACATCACAGATTATACATCTCAAATCCATACAATGAATCACAAAATTACATCTAAGTGAATCACAAAATATCAAAAAAAAAAGAGATGGTCGTCTGCGCCGCACGCCT | |||||||||
gi|117252131|gb|CT844316.1|CT844316 CT844316 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): TTATTTTTATCAATGTTGTAGCTTAGACTAGAGGTAACACAATATTTTCAACATTTAACCGGGTAAGCTTGCAAAAGGTTTCTGCTTACACGGGTGGAGAAGTGCTTTTTAGTCCCGGTTTGTAACCCCCCTTTAATCTTGGTTGTCCAACCGGGACTACGAATCCGGGACTAAAAATAGCGATCTTTAGTCCCGTTTGGAGTTACCAACCGGGACTAAAGAGGGAATAACAGCAGTACAGATGGTCCTCTTTCCTTTTTTTTTCTTTTTTATTTTCTCCCGAATCAAGTGGCATGCATATCCCTAAATCCCAAATCAAATTAACATCCCAAATCCACATCACAAATATTTAAGTTACTTATACACATAAATCAAATACATCGCAAATCCTAAAAAAAAATTACACAAATCAAATTACATCACAAGTTCTACAAAATTCATCGCAAATACATCACAAGTTCACATCGCACACAAATCAAATACATCACAGAATCATGCAATAAATCACAAATTCTAAAAAAAAAAAAAAAAAAAAGGCCAGCTTGGCCTCGAGGGGGGGCCCGGTAC | |||||||||
gi|66927267|gb|CX114115.1|CX114115 EI085N23 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): TAGTGATTAGTATTACTGGGTAAAGCATTACTCTTTTTTTTTTTTTGTTCATACACCACCCTCCAAAGTTTTATCTACATCCAACATGTGGAATGTGACATTTTGAAATTAATTTCACGTTCATTTTTATCCAAAAGGACACATATTTTGAATAATAACGCATGTGCTACTAGTCGTAGACGTGGAATGCACAATACATAATAATTAAATATTCAAAATTTATGAGCCAATATTACGTATTAACAAATAGATCTCTTCCAGGCACTACACATAGAAAATATTGAAAACACTGGTGGAGAAACCATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGGTTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCCAGTTCTAAAGGTTAGAGCTACTTTTTGATCTTTAGTCTGGGTTGGTAACATCAATCGAGACTAAAGATCATTTTTAGTCTTGGTTTAAAAGACGGCAGGTGGTGTCAGACTCCTCCTTTATCTTTAGTCACGGTTGGTGTTACCAACCGGGAAAAAAGATCGACATGCACGGTGCGAGATCGAGAGGACCGAGGCGCACGGGAGGATCAGTTAATAAGTTCCGACCTTTATCTCCTCCTCTCCGAACTCACCCCATCTCTTCCTCTTCCTCCTCTCCACACTCACTCCCATCTCTTCCTCTTCCTCCTCTCATCTCTTCCTCTGATCCGTCTCCTTCCCTCTNCCTCCCAATTCTCAATCTCCTCTGGATCCAACCCTCCCGTCTCCACCCGAATTCTCAAGAAGCGGCGGCCGG | |||||||||
gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG | |||||||||
gi|88724251|gb|CI747510.1|CI747510 CI747510 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): TAAATTATTTTATACCAAATGCTTACAAGAGACAGCAAAAACAGTTTAAATCTATATTTCTAATCACTGGTGGAGAAACCAATCTTTGGTCGGTCGGCCGAAATCCACAATAGTCCCGATTCCACTAAAAACCGGGACTAAAGATGATCTTTAGTCCTGGTTGGTGGCTACAGTGGGCATATTTGATCTTTAGTCCCGGTTGGCACCAACCGGGACTAAAGATGATCTTTAGTCTCGGTTCTAAACCTGTTAGTCCTTGTCAGGCCCCCAACTTTACTCCCGGTTGGTGTTATAAACCTGGACTAAAGATCTAGAAGATTTTTAATCCCAGTTGGTATTACCAACCGGGACTAAAATTCAANGCTTA | |||||||||
gi|88721289|gb|CI744588.1|CI744588 CI744588 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): GTTAAAAATGAGAGGAGGAGATAAGGTTGAGGAGGAGAGAGGAGTTAAAGGAGAGGAGGAGGTACCTCGATCCGATCGTGCACACCTCTCCGATCTCCGCGTCGATCTTTACTCCCGGTTGGTTTTACCAACCGGGACTATAAATAGATCTTTAGTCCCGGTTGGTGTTACCAACCGGGAGTAAAGCGTATGGCGATCTTTTTTCCCGGTTGATGTTATCAATCAGGACTACAAATAGATCTTTAGTCCCGGTTGGTAACACCAACCGGTACTAAAGATTGAAAAGTATCCTGTAGCTTTTAAACCGGGACTAAAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGG | |||||||||
gi|29679829|gb|CB676104.1|CB676104 OSJNEe12C23.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe12C23 5', mRNA sequence CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): CTCCAACTCCTCCCTCATTAGGGCATGTACAACAGTTAGAGATAATATGGTTTTTAATCATTAATGTATCCAAATACTTTTTTTTTCTCTTCTTTCCTTTCTTTCACTATCATGCAACAAAATTTACTCTAATAAATGCTAAGAGTCGACTCTGAGCCGTTGTCATGCATAACAACCATACTCCTTTCTCTTTCTTCCATGTCATCAAATTACTTGCATGGCAATAGAGAGAGACCACTAATAAAAACCGTTGTACATGCACTTAGGATTAACTGAAAAAGGCCTAAGAGAGATTCTGGCAAGGTTCCACATTTTGTTACTCAGTTTTGCTAACTCACTAATAGAGAACCGATCTTTCGTAGATTAAAAACCGGTATTAAAGTTGCTTTACTACCGGTTCTAAAAGTCCAATTCCCTATAAACAACTTTAGTCTCGGTTGATGTTACTAACCGGTACTAAAAATGCCTCCAGAGTTAGGTCAAAAGGAAAACGTCTCTATTCAAGTCAGATGTGTAAATATAGTTGGTGAGATGGTTATACGCGTGAGAGATAAGGTGAGAGATCTTGAGTTTGAATCCTACATCCCACATATTTTTTTTCTCTTGCTATATGCATTTTTAGTTTTAACCGGTACTAAAGATCGACATCTTTAATCCCAATTTGCTCATCTCGGTTGCTACCACCGGTAGTAAATGTGGTTGTAAACCGGGAAAAAAAACGTTTCCCCTGTAGCGACTGTATAAACTACGAAGTGACAAGTGACTGAATACCAAATTAAGCCTAGACACAGGGACTAGTATGTATGGCAAGCTA | |||||||||
gi|66929560|gb|CX116408.1|CX116408 EI104D17 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): AAACAACTGTCTCAAAATCAGTTAATTAGTAGCTTAGATAGCAAAGATCATCGGAGGATCGGCGATGGCGGCGGCGCTCAGGACCACCGGCGGCCGGCGGCTGGCGGCGGTGCTCGTCATGATGCTGTTCGTCTTGGCGGCAGCGCTGCTGGAGGCGCCAGCGATGGCCTCCGCCGCGAGGGTGTTGCTTCAAAGTGGACAGCTTCCGACTCCGTATCCGACCTGCAATCCAGGCCAATATCCATGCCCATCGCGTACTACTGTGCCATGATTCACTGGTGGAGAAATCGTTTGTAGTCCCGGTTCGTAATCCCCCTTTAGTCCCGGTTGTCTAATCGGGACTACGAATCCGAGACTAAAAATAGCGATTTTTAGTCCCGTGTGAAATAACCGGGACTAAAGATCGATTTTTAGTCCCGGTTGGTAACACGAACCGGGACTAAAGATCGGTCAGCCACGTGGCTGGCTGATCCATCTTTAGTCTCGGTTGGTGTTACCAACGGGACTAAAGATCTATGTACCATTTTTTTTTATTTGCATTGCCATGTTTGCTGCATGGTTGATTATACACACCATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATATATACATATATACCTATATATATATACCTATATATATGCGCATGTTATATGTCACACAACAATTTACCCGCTTTTCATGTTAAAGGCTCAACTTAATGACACATTTGTTGCCAAATATTAAACCAAGAGAAGAGCCCAATAAAAGAATTATAACGCACATAACAAACGAGACCACATGGAGGCGAAAAAGAACTAAGAGACTG | |||||||||
gi|58597243|gb|CK007771.1|CK007771 27941rsicef_4037.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): GCACGAGGCGGGAGGCGATGCGGCCACACTGAGAGCCATCGCAGCCGTGAAGATGGCTGGGAAGGTGTGGAGCAAAGTGCCGCTGCATTGGTCTGGGGCTACGAGACGGGATGAAGGAATGGATATTGCGACCAATGGAGGTGAAAGCATTCTACAGTCCACCGTGAGCGTGAGTTGAAATTATCTCGCCGCAGGTACGAGAGCGTCGGGTAGTATTCCACCGCCGGCAACGGCCGCTTCGCTAGGGGAACATAGCCGGAGGTTTTAGCACAACCGCCGGACAAGTGGCGACATTCGTGTTCTTCCTCGCCCATATGCTGCACTGATTAAAGAAGAACACCGACGAGCTGTTCTTCATTTCTTCATCCCGTCGATGTCCGGGATGCGGAACAGCTCGCCGCTGATAGTGTTGCAGATGAAGCGCTTGCACTGGTGGAGAAACCTTTTGTAGTCCCGGTTCGTAACCCCCTTTAGTCCCGGTTGGTGTTACCAACCGGAACTAAAGATCGATCTGACCTTTTTTTTTTCATGGCCCTGTTGCTGCATGGTTTATATATATATATATATATATATATATA | |||||||||
gi|29624641|gb|CB629652.1|CB629652 OSIIEb06B02.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb06B02 5', mRNA sequence CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): TGGAGGAAGAGGCGTAGAGATAAGGCTGCCCGTTTCCTCCTCCTCCTCGATCTCGTAGATGGCAGATGCCTCGTACTCTCCGCCACGATCTTTTGTTCTGGTTGGTAATACCAACCGGGACTAAAGATAGTAGGCATCTTTTTTCCCGGTTGGTGTTACCAACCGGGACTAAAAATAGCCAACGGGGACTAAAGATTAAAAAGCAGCTCTAAACTTTTGAACTGGGGCTAAAGATAATCTTTAATCCCGGTTTTTATTGCAACCGGGACTATCGTGGATTTTGGCCGACTGAGCAAATATGGTTTCTCCACCAGTGTAAATTCGGAACGTAACTTTTAATTTAGAAGTGAAGATATTATTAGCTTTACAGCACGGCATCAGCGAAATGACAGCAATATTAGTTTTATCAAGGCGAAATCGTACAAGTTATTGGGGTATCTATTTGTAAACTGGATTATCTTTTATATATTATCTACCAGTCACTTTTTAACTTCTAAATAACAATATTTACGTGCCAAACTTTTTTTTCGGATGAGACACATATACTGTGTTATAACTTTTTATTTTTTTAAAAAAAATACACTTCAGTGTAGATCTTACGAACATTAACAACTTATAATATATTTAGATTAATCCAGTAGAAGTATGGTAATGAAAATTAAAAGTCATACTAAATGTGTAGTTTTTCGGATTGTACAGTTCAGTTGAGTCGGTTAAGAAAAAAATTGAAGCAATTAATTGATAGATATATAGAGTGATTGCCATGTGCTTTGCCATCTCAGTGCATGCTGATTCATACGCCAATATCTAACTGATCGTCGGCATGCTGGACCAAT | |||||||||
gi|86902827|gb|CI312204.1|CI312204 CI312204 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): AAATTATCCCCAAATCCTCAAATCCCCAAATCGGCCATATCCAAATACATCACAAAATCTTAAAAAAAATTACATCACAACTTCTACAAAATTCATCACAATACATCACATATTCACATCACACACAAATCAAATACACAGATCCGAATCATAAATTCTAAAAAAAAGAAAAAAAAGCCTGCTCCCACGCCGCCCGCCGCCGCGAGGCCTCCGGCCGCCCGGCCCTCCGCGCTGCCCGGCCGCCCGGCTCATCCATCATAGTGGGGATGATGGGGGAGGGAAAGGAGGAGAGGAGTTAAAAGGAGAGAAGGAAGAGGAAGAGATAAGGTTAGAGAGGAAGAGATAAGGCCACCCGTCTCCTCCTCNATCTTGCACATGCCTTGTACTNTTNGCCGNGCATGCCGATCTTTTGTTTCGGGTGATGTTACCAACCGGGACTAGAAATAGATCTTTAGTCTCGATTGNTGTAATAAAANATCTTTTAACACCCAACCCGANGANT | |||||||||
gi|88555731|gb|CI486009.1|CI486009 CI486009 Oryza sativa (japonica cultivar-group) 15 days after pollination pistil Oryza sativa CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): CGGGAGAAAATACATAGATTAACACTAGCCATTAGCAAATCAACAACAAAATAATAATAAAAAAAATCTCGAGGAACTGTCGCTTCCCCTCTTTAGTCCCGGTTGGTAGATTCCCTCTCTTTACTCCCGGTTGGTGTTACCAACCGGGACTATTATTTGAACCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGGAAAACCGGGACTAAAGGGGGGTTATCAACCGGGACTACAAACGGTTTCTCCACCAGTGTGAGATGCACACGATAGTATGCATCATACACTTGTTATTTGACTATACAAGTAATTGAAATTCGATCAACAACAACCATAAGGAAAGAGTTGAAAGTTGGCGGGTGCCATGTTGCACACATATGGCAGTTGCAT | |||||||||
gi|88694009|gb|CI738047.1|CI738047 CI738047 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CCGGTTGGTAACACCAACCGGGA EST sequence (targeted fragment marked with yellow): GGTGGATTTGGGATGTTAATTTGATTTGGGATTTGGGGATATGCATGCCACTTAATTCGGGAGAAAATAAAAAAGAAAAAAAAGAAAGATGACCATCTGTACTGCTGTTATTCCCTCTTTAGTCTCGGTTGGTAGACCTTATCTTTAGTTCCGGTTGGAGTTACCAACCGGGACTAAAGATCGATCTTTTGTCCCGGTTATTTCACCCGGGACTAAAGATAGCGATCTTTAGTCCCGGATTCGTAGTCCCGGTTGTCCGGGGTTACGAACCGGGACTAAAAAGCATTTCTCCACCAGTGATGGAAAAGTTAAAGTTCGGAGAACTGGGCCAAGCAGCATATGGAGGCGTCGTC | |||||||||