mature miRNA: CCTACTCCCTCCGTTCCTAAA species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|222371606|gb|GH732592.1|GH732592 OV.109L06F010309 OV Triticum aestivum cDNA clone OV109L06, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CATCCATGTCCATATTGTGCATATCTATACTGGATTTTTTAATCTTTTAAATGTCATTATAGACTCCTTTACTAAATCACCTCTCTTTATCCTTACCATTAAGATGAATAAGTACAAAGTTGTACTAAAGTTGAGACATTTATTTTGGGACAGAGGGAGTAGAATGTTAAAAAGCAAACATCTGTATACCCAGTTTATCAATTCAAGTACGGGGCTAAGGCATGAAAACTGCATTTTATCAAACAACAATACAGTAAAAAAATACAGATGGAGCTGCAGTTTGCATGTTTAAAACTAATGTGTATGTAAATATTAGGGACATTTTCTTATGAGCACCTGCAATATTTGCACAAATTTCTTTCCTAATGATGGTCAATTCTTTAGATTTTTTTCATAGTACAGATGTCTATCACCACAAATGGCATGAGTCCATAAGTATTTATATTTTAAGAGTTCATAAGTTGGGTTGACTGTGAGACTCTAAATACATGATACATGGTCTTCTACAATTTATATTACTGACCACTGAAGTGTTTTATATGTTAGTATCTTAACATAAATATTTTTGTGATTAAAAAGTTTCAGCTTATTCCTTTGAATGACCTGAGAAATATATTTGGATCAGGTAAGCGTGAAGCACAGGCATACAGAAATAGGCTTACAGAATCCTGTGGTACTGTTTTGGCTGCTGCTCCTAACAAAGC | |||||||||
gi|222367586|gb|GH729898.1|GH729898 G750.108N07R010801 G750 Triticum aestivum cDNA clone G750108N07, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GTTTTTTTAGGAATGGAGGGAATAGTATTCTGCAAATTTCAAAGGAATTTCAAATGAGAGGAACTCAATATATTTTTACCGGACTTTTTGCATGCAAAATACTCCTAGTACTGATACGTCACAGTAGCTAGCTTCCGGATCAGGTGTATCCAAAAATGATGTCTTCGTCCCTCTGACCGTCTCCATTGTCCAGCATGGTGGCGGCGGTGCCGAGGGAGACGCCGCGCTTGAGTGCGACCTCGCCAGCGACCTTCTCCCCGGCGTACAGCTTTGCGGACTCCATCTGGCGCTCCAGCTCCCGCTGCTTGACGGCCTGAATCTTCTTAAGACGGAAGAACTCCTCTCTCTCCTGCTCGTCAAGCTCGCCCCTGATATAGGTAACGGTGTTCTCCAGCTGCGGCTTCACTACGTGCTCCAGCGCGTTCACGCGCCGGTTGGTCGTCTTGATCGCCTCGTCCAGCGTCAGGA | |||||||||
gi|222367468|gb|GH731913.1|GH731913 OV.003D06R010410 OV Triticum aestivum cDNA clone OV003D06, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GGAACGTCCCACAAACACAAATTCCATACCAAAAATCTCGACACCATGTGACGATTATCATGTGCCCAAACAGTGATGAGAAAATAAACAGATGACTCTTGTTACAACTCTTGCCGCACATGAGTAACAAAAATAATAAGGCTAGTTAATACTCCCTCCGTTCTTAAATATTTGTCTTTCTAGTCATTTCAAATGGGCACAACATACGGATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATCTTGCTCCATATGTAGTCATTTGTTGAAATCTCTAGAAAAACAAATATTTGGGAACGGAGGGAGTATATTAAGTAGACTCGAATTGTGAAGCGTCTTCATAACATGTGAGGCCATACATTAATTTGCAGGCGCAGCTCCTGTAGCCTCTGATCCTTGTTCAGATAGTACTTCAGCCTCAACTGCAAGGTTTCTTCCACACTCTGTCAGTACTCCTCTCCAGCACTTCGCCGTTCTCGTTCTCCTCGCCTTGGACTGGGGAANCCCTACTCCCAGAGGACCTAACCTCAGTTGGTGCTTCACGC | |||||||||
gi|222369376|gb|GH731706.1|GH731706 GR45.120E09R010830 GR45 Triticum aestivum cDNA clone GR45120E09, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): AAGAGGAAAATTAGTAAAGGGTATAATAAAAATGAGGTGTGGGCATAAGCATTAACAAGGGAGTAACATCTACCAAAAATTTACATTTTACTCCCTCCGTTCCAAATTACTCGTCAGGGGGACGAGAAATTGGGAACGGAGGGAGTAATTCTGGAGGAACAACCAAATTTCCACAAAACGAAAAAGGAAAAAAAGGGAAAAAAAAAAAAGGGGGTAAAGCTAAAAACTGGTCTGGTCTCTACTAACAGCCAGAATCTCTGGTCATGGGCCAACTTAAATGGTAGCCACGTGAGCGGAAAACCGGGACGGACAAGAGAGCCCTCACGCAAAAAGTCAAGTCAAGGAGTCGCAAAATCGCGAACCAAGGGGGCAACCGATTGGGAAACAAGGGGAAAATGGAACGGGGGGTAAACCCAAGCCCGGTTCCCCGGCCACCATGGGCCCGGCGGGGTCTCAAAGAACCTCTAACGGGGGAACCAAAGTCGCTTGAAATCTTGGGCCCCTCCAAGAAAGGAAGGGAGAGGGATAAAAAAACCGGGGTCGGATGGATATAACCATGGGCCTCGGGGGGCATCCGCAAACGGGGGGGACAACAACCAAAANAGGGATGGCGGGAAGGGCCAGACAGTAACAAAAAAAAAAAAAAAAAAGAAAAAACAAAAAAGGCACAGGACACAGGAAAAACGGGGAAGCAAAATAAAGAAAGAAGGAGAAAGAAACAGGACCAGGGGAAAACCGGAAATCGAAGGCAACGAAGAGAACCAAAACAAAAAAGACAAAAATAGGGAAA | |||||||||
gi|222372302|gb|GH732470.1|GH732470 OV.108E09R010429 OV Triticum aestivum cDNA clone OV108E09, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CCCTTTTTTTTTTTTTTTGAGCGTTCACTTCAGAATATTTTCACCACATAAACAGACAACTGATAATTCCCTTAATTTCACTGCAGTGGATCGACGTCACCTAGGCAAGAATTGTTTGGCCAAACTAATCAACCCAGGCTTTAGTTTCAAGATACTGGAACACTCCTTGATAAGTAGTGCCTCCATTCATAAATATATAAGATGTTTTGGATATTTCAACATGGACTACATACGGACTGAAATAAGTGAAGAAACACACTAAAACATATCTATATAATTCAATTCTAAGAAAAAAAAATATGTTATACATTTGTGAACGGAGGGAGTAGTACCTAGGAGTAATCAATACAGTAGTGACGTCCCAGCTCCCACCGGTGAAGGGCTGAAGGCAATCTCTGCCGTTGAGCACAGGTTTGGCCCATTCTCCACCCCAGGGCTGCGGCACGATGTGTGAGCTCCAGGCATGATCGTACCTTCAGACAACCGCCGACATATATATTTCAGTCGTATTCGGTTCCTTTAAAGCCAGTCGTACTCGGGTCCTTTAAAGCCGTGACGACTAGGCGGCCGGCACTCTACTGTACCCCAACGGCTGCTGTCGTGTGGCTGGCTTCCTTATCATGCTCAGCTTGCTCCCTTCGTTCCATATAGTTGTGCATCACGCCTCCTACACTCACGCCGAGGGAGCATCTC | |||||||||
gi|222366736|gb|GH729461.1|GH729461 G750.102A20R010731 G750 Triticum aestivum cDNA clone G750102A20, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GAATCTCTAAAAAGACTTGTATTTAGGAACAGAGGGAGTAGATTCCTACTACAGTAGGCAGCTCCCACTTTCGAACAGATAAGTTGGCAGAAATAAATATTTAAAAAGCACTGCAAGAGAAGGATAATTCAGCGGTACCGAGGTGCCTCCTCTAATTCAGAGTTGCCTACTGTGTTTCTGACGACCCATGTACAAAATTAGACCAGCCCGGGAAGATAGCAACCGAAATCCCCAAAATAAGCTGCAACAACGCAGCAAGTCGTTGGAGCGTATCATGAACGCGACACGGCAGCTGCCACCATCAGCAAGCTTGCAACCTACCACCAATACTAATCAAGCCAGATATCTGTATGTGTTGGCGTTGTCCTTGTCCCGCTCCAGGTAATCCCTCGTGATGAGATCTTCAATCCTCTTCTTGATTGCTTTGAAGTCAGGCTTGAACATGCGGCTGAGCCTGCTCCAACACACTCCGCAAACTAGCCTGTGTATGGGCCCATAACTTTGGCGACTCTTTC | |||||||||
gi|222363811|gb|GH723815.1|GH723815 AZO4.105M19R011122 AZO4 Triticum aestivum cDNA clone AZO4105M19, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GCCAGGAAACAATAATTTTCTATAGTATTGACAAAGCAAGAAAACAATCTTAGCCATTCAAGCTGAAGAACGATAGATACCGCACTTCCATTACCAGAAATATTCATTTATATAGTTACCAAAAAATATGCAAGCTATGTCTGTATCAGACACACATACAGTATAACACTTCAATGACTGAGGGGTAAATTGTGAGCTAGCAATGCAATCATGGAACACTGACATATAGTTATTCATTAACACATTGTGGCTACACTCTTGAAAAGTTGAAACGAACCAAACATAAAAAAAAGGAACAGACAAAATCAGAAAGACCAGAGCAGGATCTATAAAATCTTCAAGGCAAACAATCATTGCCTACAACATACTCCCTCCATTCCATAATGTAGTGCTTCCTCTATCCACGTGCTTCAACTTTGACCGTAAATTTAACTACCAAGACCGATTGCGGCGGAAGCAAAAATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTCAATTATATAATTTTTTCTCCCGCCGCAGTTGGTCTCATTGGTTAAATTTATGGTCAAAGTTGGACCTCCGGAAGCGCGGGCGCACTATATTTTGGAACGGAGGGAGTATGACACAGCACAGTGTTATATTGGTTTCGGTTTAATACGATAGCCATCTCACAAAATGGCACCTGGATAGGTAATATTTGGCTGATTACTGAAGC | |||||||||
gi|143801529|gb|CJ967450.1|CJ967450 CJ967450 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul7h16 CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CCCAGGGTAAATACATCTGTGTTGATGGTGATGATCCGTTCCTGCAGAATCAGCAAAGGCGGACGGCCTTGATGCAGTGGCGAGAATTGGGGTTGCTGCTGACCACCGAGGCATCGTCTGCGACCACCGCGTGTTCCGCATAGTCCAGCATTGGCTGCACGCGGGTGAACCTGACCCGTTCTATGACCCACTCAACGACTATGTCGTCATCCCAACCATCTTCGAGGTTGAGAAGCACCACGAGAAACGCGGGGACGTCACCTCGGTCAGGGAGGACTGGGAGATCATCTCCCACACCGACGGCGACGAGGCCAAAAGGCCGGCGGAGCTCCCCGCTATGGTCGGCGCGTTGTCTGCGTCTCGCGAGGGCAAGGATGGCCTGCTGGACGAGGCGCAGGCCACCGTGGTGGTCCACCCGGAGAGCGGAGGCCGGCAGCATGTGGAAGTCAGGGCTGTCGGAGTCAGCCACGGTGGCTAGTTACGGGCTTACTATATACTCCCTCCGTTCCTAAATACTTGTCTTTCTAGGCATTTTAACAAGTGACTACATACGGAGTAAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTGTTAGTCATTTAAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTACTTGTACTATATATAACTTAAGTAGCTAGGGCGATTGCACATACTGTAAACCGTTGATGCACATAAGATGTGGCCAGGTAGGGAATGTGTCTCTGTAAATACGGTATACTGCTGCTTGTAAAAATCTGAACTTGGAAGCACAACGTGCACTGGCT | |||||||||
gi|143798093|gb|CJ964016.1|CJ964016 CJ964016 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul34d1 CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CTNTGAAAACCCTTTCGCTGTCCAGGAAGAAAACGACCATTACAGTGCTCAATCTGCCGAACAAGGGGACAAGGATGACATATACCAGTTCGNCCAAATTCTTCTTGAAGTGATCACAGGCAAACCGACGGCGTCCCAAAGCGAGTTGGAATCCCTGAGAGCCCAGCTAAGCGAGGCCCTGGCCGAAGACCCGGACATGCTGAAAGACATGGCCGACCCGACGATCCGCGGCACATTTGCGGTGGACTCCCTCAGCAAGGTGACCGAAGTGGCCCTCAACTGCACGGCTGGTGACCCGAGCGACCGGCCTTCCGTCGACGACGTGCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGCTGGGCGAGCAGCGAGAGCTTAAGCTTGAGCGTGAAATCACAGGCGTGAGTCAGTGCAATGCTCTTTTGTAGCGGTGCACCCTTATGGCTGGCCTTTTGCTGTGAAAGGGAGAAGCAAATGTTACTTATCCCCCGTATATAGAAGTGTGCCACTCCAGAGCATGGGGAGTATTTCTTGTTTGTCGTCGTAAACTCCAGCACTATTAAGTCCAAACCATTAGAAAGAGATCACTAGCTTTTCTTGTTTTTTTTGAAAGAGATAACTACTTCTTATATTATGGGACGGAGGGAGTAGCTTATTTTCTGCTGTTTGTTGTATAAACAACCAGGACCTATCCATGTTGAAACCATTAGATCACTAGCTTATGCTGACATCNNTGCTATCTAT | |||||||||
gi|222368671|gb|GH728396.1|GH728396 G750.105J03F010529 G750 Triticum aestivum cDNA clone G750105J03, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GTGGAGCTCCAGCTGCTGCAGTAGCTCCAGTATCAGCTTCCGCTCGTGCTATGCACTATGCACTTCTTGGGTTAAGGAACAGCCTTGATCCTGAACACAAGAAAGAATCTGCGTACAAATACTCTGGGCCTTCTCAATCGTAGACTTCAGTGTGGAGGAGATTGCCTAGCTATGGTCTCTTCATTCTTGTGTGGCATATATCATCTATTTTGGAACGGAGGGAGTATAAATTAATATACGAACCATGATTGTAGTCACCACACCTTTTCCATCTCGGGTGGAAATTTTGTAAACTCCTAGCTTAGACATTGACTAAGGTCGAGGGAGGGGATCAGGGGGGATGGGTCCAATTTCGTACATAATTTGGTTGCTTTCTGAGTTGTGCAGATGTAAATAACTCTTCTGTCTCGGTTGCCAATATGTCAGTCGGCTCGCCAAAAAAACCAACAACACAAAAA | |||||||||
gi|222366760|gb|GH727106.1|GH727106 G356.113D22F010920 G356 Triticum aestivum cDNA clone G356113D22, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAAGGTAATGGTGGGTGTATGATACCGGCGAAAGGTGCGCGGTATTAGAGAGGCTCGCAATGGTGGAAGGGTGAGAGTGCATATAATCCATGGACTCAACATTAGTCATAAAGAACCCACATACTTATTGCAAAAATCTATTAGTTATCGAAACAAAGTACTACGCGCATGCTCCTAGGGGGATAGATTGGTAGGAAAAGACCATCGCTTGTCCCCGACTGCCACTCATAAGGAGGACAATCAATAAATACATCATGCTCTGACTTCTTAACATAACGGTTCACCATAGGTGCATGCTACGGGAATCACAAACTTCAACACAAGCATTTCTCAAATTCACAACTACTCAACTAGCACGACTCTAATATCACCGTCTCCATATCTCAAAACAATTATCAAGTATCAAACTTCTCTTAGTATTCAATGCACTTCATATGAAAGTTTTTATTATATCCCTCCTGGATGCCCATCATATTAGGACTAAATTCATAACCAAGGCAAATTACCATGCTGTTTAGGACTCTCAAAATAATATAAATGAAGCATGAGAGTTCATCTATTTCTTCAAAATAAAACTACCGCCGTGCTCTAAAAAGATACTTCCTCTGTCCCAGAATATAAGACGTTTTGACACTATGCTAGTGTTAAAGACATTCTTATATTTGGGGACGGAGGGAGTATAAGTGAAGCACTAGAGCAAATGACAAACTACTCCCAAAGATATAAGTGAAGATCAATGAGTAGTCGAATAATAATGCAAATATGTG | |||||||||
gi|222365045|gb|GH722779.1|GH722779 AZO2.121A21R010521 AZO2 Triticum aestivum cDNA clone AZO2121A21, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): AAAGCTAAAACGGGGGGCATCCCATAATATAAGCTAAAACTGGCTGGGCAAAACGATCTTACATTATGGGGATGGAGGGAGTAGTTCACAATGGGCGTACCTCGTAATCAGGTGAGCTCAAGTTTAGAGAAGGGGGAAAAACAGATGAACTATGGGCGACACTATTTCCGTTGGGGGTGCTCATGGAAATATTTTCCAGTACATGGTGGACCACCCTAGGATTAACACTGGGGTTCACAAGCAGAATTACCGTTACATGCGTGGTCCAAACAAACGAAACAAGATGGCATGATACATAACACAGCAGCTCGCACATCTAGTAACTCTTCTTCCCAGAATTTCCCTTCTTCCAAGCTTTCCTCTGGTCTTCCTGGATCTTCAAGTGAAGCTGTACCTTCTTCTGGCTAAGGGTGCCCATGGGCTTCAGAAAGGATGTCGACTTCTGGCTTCCTCCATCAACCTCCAGGGCAGAGGCCCGGCTGGCGGCGGCGGCAGCGGCGGCGGCAAGGGACTCCTCGAACGCCGGGTGCACGCGGACCGGGGAGCTTGGGGGCCTCAAGGGCGGAGGCCTGCGCGGCCTGCTAGGCGGACACCTTCTGGACGCACAAGGGCACCGGAACCCCCGCCGGAAAGC | |||||||||
gi|222371431|gb|GH732851.1|GH732851 OV.113J09F010313 OV Triticum aestivum cDNA clone OV113J09, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): ACATCCTCCGTTCCAAAATACATGACTCAACTTTGTACTAACTTAGTACAAAATTGAGTCATCTATTTTGGAACGGAGGGAGTACTTCAGAATCGATGGCTTGAATTAAGTTGGCATGCTACCTGAGGATTGAAATAATGTGTACTATTAGATTTTGCTGTTTCAGATTGAACATCGATTTATTCACAGGAAAAAATAGATTGAACATAGCTTTACTGTAGTATTACATTCCAACATACTTTACACGCTCCTAAAAAATCAAGTGCAAAATTACATTAGAGGGGAAATTCAGTAATTGGTTTCTGAAACTAAGTGACATGCACATGTAAAGTTTGTTTGCTTGATGTGCTTTGTATGCATACGTATTGTAGCCATATATATCAACATGTGACAATAGTATTGCGTTTGCCTTGAACACTAAATTCAGTCTTTCAAAAAAAGAAATTTTGTAGCCATAGTCAAGTCTGCTGCCCTGTGCATGAACCAAACACAACATTAGCTTCCTTTTGAATCCTGAAGGCACCAACTACAAATTATTTTAGTGTACGAAAATCAATCATCAAAGTTGCAAAATTGTGTGATTACGAGGAATCTCGTTTCTTAAACATGTGCATCTTTAGAAAATTCTGTATTCATTAATCATTATGAGTGCACAAATAACCAGTAAAATTGTTCTACATGAAGACCAGAGAAG | |||||||||
gi|222370694|gb|GH727745.1|GH727745 G550.127L16R010920 G550 Triticum aestivum cDNA clone G550127L16, mRNA sequence CCTACTCCCTCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CGCCTGTTTTTTTTTTTTAGGAACAGAGGGAGTATAAGTTAGATGGACAGGAAACGGAGCAGGAGGAAATTTACATTACAACCAAATCAAATCGCACACAAGTGCTGCTGTACAAGAAACTAGTCAATCCTCACATCACATAGCACTCGTCTAGAAATTGTTTGCTCCCCTGCTAGTACTACTTAGCATTGTTCTAGAGGATACACTCGATCTCATCCCTGGTAAACTTGTAGAACTTGGACTTGTGCTTGACCATCACGAGTTTGGATGGCTCGCCGCGGCGCACCACCTCCAAGCCAGAGATGACAGCACCCATCCCCAATCGGTCAACGCCGACGCGGAACTCAAAGATTTTCGCGACGCAGAACTTGCCGCCGCCCAGGTACACCATGCTGCAGTCCATCATCACCCAGTCGTCCGGCAGGCTAAGGTCTCCCCAGCTGTACGCCAGCCCCGGAGCCTCGGCGCCGGCGGCGCGGAGGGAGTAGAGGTCCATCGCGCACAGGTCGTAGGGCCAGCCGCCGCCGATGCCAAACCAGAGGTTGTCGAGCTCGCTAACACGCTCGGCGCGGCCGACGAACGGCAGCGTCCAGCGTCCAGCCTTGAACCACCTATTGGTGGACGTGTTGAAGCAGTGGGTGCCAACGCCGCTCGTCTTGGCGGACGAGACGACGAGGATGGGGTCGCCTTCGTCGTGGATGAGCGCGTGGCACCCGACGGCGGAGGCGGGGGCGCGAGGCACAGGCGGGGGCGGGAGCTGATGCAACGCCAGCCTTTCTGCCGCTGAGGGGTCGCAATACCGGACGCGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGGCAAAGGGTTCCGGGTAAATGTTTCGCGCCAAAACCCCAAAAAAAAACCCAAAATAAAGGTAACCGGGGGGCTAAAGGGGGTACCAATT | |||||||||
gi|143798129|gb|CJ964052.1|CJ964052 CJ964052 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul34f1 CCTACTCCCTCCGTTCCTAAA |