mature miRNA: CCTCCGACCCAAAATAAGTGT species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|207391173|gb|FF359294.1|FF359294 BG02032B2H09.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGACCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): GTCAAACCAGCAAGTGATCCTGGATGGCGTGTTCCAATGTATAAAGCGCCTCACCCATCCCCACCAATCCCCCATGCACCCTTGGGCTATGGACATTCTCCACAATTTCCTTACCCTGGCCGTCTGCTATCTGCTGGGCGTCTGTATGGGAATCTTGGTAATAACAGTGAGAGGTCACCACGAATTTCACATAGGTGGATTCAGTGTGATGGTTGTGGAGTTCAACCAATTGTTGGGCCACGCTACAAGTCTAATGTGAAAGAAGATTATGATCTGTGTGATACCTGCTTTCGTCGTATGGGCAGTGAGGTTGAGTACACCAGAATAGACAAGCCTATCCTGCCACACAAGTTATCTCGGGACCCTAATTTGTGCCGGAAAATCCATTCACGTGCTTCGATGAAGTCAAAGCGTGAGAAGCTTGAAAGCCGCTTCATTTTGGATGTAACGGTGCTGGATGGCACACTCATGTCACCTTCAAGCCCGTTCACTAAGATTTGGCGCATGCACAACAATGGGTCTATCATGTGGCCCTTGGGCACACAGTTAATTTGGGTCGGTGGAGATCAATTTGCACTGCAGACCTCTGTCCCACTAGAGATTCCATTGAATGGATTTCCGGTGGATCAAGAGATGGATGTTGCTGTTGATTTTGTGGCGCCTGCAAGGCCTGGGAGGTATATATCTTACTGGAGACTGGCATCACCTTCTGGTCAAAAATTTGGTCAGCGAGTTTGGGTTCATATCCAGGTGGAAGATCCATCTTTTGTCAGTGACAACAAGACTGCTTCTGTAAACTTGAATCAG | |||||||||
gi|207433842|gb|FF348486.1|FF348486 BG02021A2G09.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGACCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): GCGATTTCCTCTCAACTTCCACGTGTAAAATCACTAAGGCTGGGATTGGAGGCCCTCTTGTTAGTCTTGACGGGGATGTTATTGGCATGAACTTCTATGATAAGAGAATAGGAACCCCGTTCCTGTTTTTGGAGGAGATTTTCAAAATTCTAGCATCGTTTGAGAGAAAAAGTAAACTTGGTGAAGTTGGCAATGATAGTGATCCCTCTGGCACGCCTTTCTGGAAAATGGATGATGACAAAAATAAGTTGAACAGGTGGCCTGTGCCCATGCCGTGCTGGCTCAATCCTGACTATGTGGATGAGGATAAATCTGATGATGATGATGTCTTTGATCCCAAATCTGGCCGCGCGCCGAGATACGGTTACTTCAAGGGAAAGAAAGTCATGCTCTTTTAGATGCAGTCACACCCTTGATTGGCCACACAATCTCCATATCATTGCGTGTTTGAGATGGCAGAAGTAACCTGTGGCTTGCTTAAGTCTTATTATGTTCTGCGTCTGTATCTTGGAATCATTCTGTGCTATGTTGTGTAATACTCCCTCCGATCCAAATAAGTTTCTCAGTTTTGAACTAAGGTTAGTTCAACCTTGGTTCAAAACTGCGACACTTATTATGGATCGGAGGGAGTAGCATGCAGTGGTAGTTCAAGTTGCACACTATTGTACTCGTTAAGACCGACTAGTTTGCTGCCTGTGCTGTTTTTCGAATACTGTTTTGGGCACAAATCAATGTTCCGTGTTGGAAGCCTGCCAACCTTATAGGATGGACTCCTCTACAAGACAGCAAATGTAACCCTTGT | |||||||||
gi|207473860|gb|FF341676.1|FF341676 BG02008A1A03.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGACCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): CCTGTGACCGCTACCTCCTAGCGGTGAGGGTGCCCTGCCCCAAGGAGGCGTACTGCTGCGGGAGTTCCATGGTGTACTGCATGGTTGGCGACCACCGCCTGGTGTGCGGTGTGCCCGCACGCGCCGTGCCTCTGCCCTGAGCCCGGCTGCGGCTTCCTCGGCCCGTCGCCGGCGCTCCGTGGCCACCTTGCCGAGCGCCACCAGTGGCCCGTGACTGACATCGCCTACGGGTCCATGCTGGAGCTGGAGGTCCAGATGCAGCCGGCACAGCGGGGGCAGCTGTTCTTGTTGGCGGCGAGCAAGCGCGGCGTCATGGTGGTACAGATGTAAGGTGTGGGTGCACACTCCCGTGGACGCGGACACCGACCACATGGACGTCCTGATGCTGGACGCCAAGGTGAGGAGCTGCGTCGTCCCCGGCGTGGAGGCGGCCATGGACGCGGGCGGCAGGTACCTGCCAGTGTCGGCCGACGTGCCGCCGCAGGAATGAGGGATCGTCCTCCGTCTCCGCATCAACAAGCAGGTCAAGGCGAGGAGCCCCCGTTCCTGGGGTTGACGATTAGCTGGTCAGCTCCGGTTCTTTATCTAATCTACTATATACTCCCTCCGTCCTAAAATAAGTGTCTCGTCTCAAGTTTAAACTTGAGACACTTATTTTGGGACGGAGGGAGTAGTATATATCTACCATGGCTGACGTTGGTGATTTGATAATGAACTAGCAGTGATCAAAGGTTGGACCTTGGTTGGGCTTTTGATTGATTCTTTCCATGGCAATGGTTGCCCATGTATCGCGTACCAATGTGGTTGATCCCTACTTGGCCTGTCCATTTTACTTGTTTG | |||||||||
gi|207494704|gb|FF363023.1|FF363023 BG02037B2C10.r2 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGACCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): TTTTTTTTGATTCGAATGTATTATTGGTAAGATAAGGGGAACATGGGGGATGTATACTGGTACAATATTCGAGTACTCTACAATATTTACAAGCACAATCAGAGAGTTGCTCCAGTCAAGTCCCAGAGTTGTGCTGTTGTTTCACCTCCATAGATCCACAAGCGAACTAGTTTTCCTACATAGTACCAACTTTACTAAATCAGCGAAACTTATTTTGGGGCGGAGGGAGTACCTTTTACTTTACCACTTCCAGTCAAACTCTACTGAGGCCTATATACTTACAAAACTGTACATGCCATTAGAATAACACAACACCTGGCACCAAGTCTCAACGGTTCCGAAAAGTTGTGAGCAGTCACAAATTCCAAATTCCAGGTTTCTCAGTGCGGCAGACCGTGAGCATCTCATCATACTTCGAAGCATTGACGAAGCCCCACAACTCAACATGTCTTCAAAGTCCTGGGAAAGTGACAGGCATGGGTTGTTAAACGTTTCTGAGGTGGAACTTGAACCATTCAGGAGGTCTTCACCGAGATAAAGTGCAAAGTGACCACCACCTCCCATTGCCAAATACTCAGGGGAGCAAAACGTGAAATAGTTATTAGCACCTGTTGGACGGTATATAACAGGACGACCAGCTACATTGGTGAACACGAAGCAGTTCTTGGTCCCCTGATACTTCCTTTGCATGATCGGCCGCAAAGGGGCCTCTACTAAACCACCAAAAACTGCTCCCTTTTTATCCCCAATTATCNGAAGTGAATCACCAGCGCAAAGCATGCTCCTTCTGTAC | |||||||||
gi|207382165|gb|FF353884.1|FF353884 BG02026A1A12.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGACCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTAGTACGAATGTAACACATCAATTTGATGTACCAAAATGATTACAATCCACTGACGAAATGAAGATGACACAATGGTGTGTCAATAAATACAACACAATCTACATACATACATACACACACATACAGTGATTTGCTGCAGCAGCGAGTCTAAGCCGCTTTGGTGGACTTATAACAAATTTAATCGCGAATTCGTGATTTTGGTCAGACAAGATAATCTTCTTCTTCTACTACTTCTTTCTTAATTTCTATCCCTCCAATCCAAAATTAGTGTAGTTCAAAACCGCGACACTTATTTTGGGTCGGAGGGAGTACTAAATTATATCCATCAGATGCTCTGGAGCCTGCTGTTCGTCCCGCTGAAGATCTGGTTAAGGATCACCGCCAGCCTCACGCCCCCCTGAGCGATCCTCTTCTCGACAACCGGCAGCGCCCGGAAGTAATAGTCGTCTCCTAAGGTGTCGCCTTGCTCGACGCCCTCGTACGCGTCGCAGGCCAGCAATGCGCTCTCCTTGGCGTACCTGCATTCGATCATTCTCAGCCGTCAGATCCAGCCTCGGGGTATACATGTTCAGTTTTGCGGTTGGATTGGCAGGCTCGTCGTCATCGTGATCTGG |