| mature miRNA: CCTCCGTCCCAAAATAAGTGT species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207489037|gb|FF341423.1|FF341423 BG02009B1D10.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): CTGATTGTCATGCTGCGTGAAAATTTGTTTGGAGACCTTCTGATTTCACTTTTTTCTATTTAGTTAGCTAGAAAACCAGCTAGCTGTGAAGTCTGAGTTTTCAAACTGATCCGCAGAGGTGAAGAATTCTAAAAGCTTGTTTGGGAGCTTCGTTCTGGATAGAGGAGGACTAATTTGAACTAAAACCACGACACTTATTTTGGGATGGAGGGAGTACCTATGCTCCATCCTTTTTTTCAACTCGTTGTCCAGTTCTAATTATGTTCTGACTTTCCTTGAAGAAACTTTAAGTATTCTGATTATATTTGGGCTGTTCATTGATCAGCACTGTTGGAGGTTTTATTGGAAGATTGTAGAGTTGGAAAGTCTAGCAACACGTCAGTTGGTGGGGGGATTTGCTGAAGCAAATGGATCATCTGCTTCCCGGACGGTTTTGACTTCTGATTAATCCTGATCCTGAAGCATATTACTTGATTTGGTCTTTGTGGCAGCTTTCAGTTTGGACTTGCATTCAGTGGTTGTTTGGAGTTAGTAGTGTGCACATCTGATTCTTCCAACCGTCCTGAAGCATCTTGCTTGGTTTCTGTTGTGTGCCATCGGTATCTGCTTAAACCTGCATGTGGTTTGGATGGAATATGATCTCATCTTTTGCTCCGAATCAACAATGGNNATACCAGTCCATACTCAAAGTTTGTATAGGAGATTATCNNNTTTTGATTTGCCTATTAATCACTACA | |||||||||
gi|207386708|gb|FF359759.1|FF359759 BG02037A2F05.r2 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): ACCGATTTTNNNNNTTNNTTTTTGTACTACCATATAAGTTAAATATTGTAGACTAACAGTCGTTAAAGCTACGGTGTTTCAGGAAACAGAGACACCAGGCATGCCCGGAACTACTACATCCCACAATAACAATATACTCGCTCAAAGTTAGTACAAACTTGAGTCACTTATTTTGAGACGGAGGGAGTACTTGAAATGCACATATTGGAATCTGCAGGGCTCCAAATGTATGAGCAGATCAAAACAAGTTCCCACAGATCAAGCTTAGGATCCTACAGATCCAGCTAAGTCAAGCAACAAAACACCACAAAAGGGGACCTTGCTTTTCAGTCCCCCGGAGACCCGGGATCTCCACTCTACACGCACGGGAGTTGTCGAAGCCAATTGAAATTCAGCATGAAAGAGGGCTTCACTCGTCATCATCTTCCTCCTCTTCTTCATCTTCATCATCGTCTTCTTCATCAAATCCCTCTTCATCCTCGTCATCTTCAAATTCATCTTCAGCCTCATTGTTAAAATACTTCAAAGGATTAGGCCACAACTCTTCCTTGATAACATCTGCCACCTCATCCATCACTCCATCAGAAAAACTTTTGTTCTTTGCATCATTGAACCAAGTGAAGAAACTCTCATCAATCAATAGTCGTTTCTCCCCATTCTCTGTGTACGCCTTTCCATTTGCAATGTCCATTCCATCCTTCCAATTGATGGAGGTGGCCTTTACAGTTATTTTTCCATCATCACTGAACGAACATGTTTTCGTAAGCTTCGTATCTTCAAAATATGGA | |||||||||
gi|207494704|gb|FF363023.1|FF363023 BG02037B2C10.r2 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): TTTTTTTTGATTCGAATGTATTATTGGTAAGATAAGGGGAACATGGGGGATGTATACTGGTACAATATTCGAGTACTCTACAATATTTACAAGCACAATCAGAGAGTTGCTCCAGTCAAGTCCCAGAGTTGTGCTGTTGTTTCACCTCCATAGATCCACAAGCGAACTAGTTTTCCTACATAGTACCAACTTTACTAAATCAGCGAAACTTATTTTGGGGCGGAGGGAGTACCTTTTACTTTACCACTTCCAGTCAAACTCTACTGAGGCCTATATACTTACAAAACTGTACATGCCATTAGAATAACACAACACCTGGCACCAAGTCTCAACGGTTCCGAAAAGTTGTGAGCAGTCACAAATTCCAAATTCCAGGTTTCTCAGTGCGGCAGACCGTGAGCATCTCATCATACTTCGAAGCATTGACGAAGCCCCACAACTCAACATGTCTTCAAAGTCCTGGGAAAGTGACAGGCATGGGTTGTTAAACGTTTCTGAGGTGGAACTTGAACCATTCAGGAGGTCTTCACCGAGATAAAGTGCAAAGTGACCACCACCTCCCATTGCCAAATACTCAGGGGAGCAAAACGTGAAATAGTTATTAGCACCTGTTGGACGGTATATAACAGGACGACCAGCTACATTGGTGAACACGAAGCAGTTCTTGGTCCCCTGATACTTCCTTTGCATGATCGGCCGCAAAGGGGCCTCTACTAAACCACCAAAAACTGCTCCCTTTTTATCCCCAATTATCNGAAGTGAATCACCAGCGCAAAGCATGCTCCTTCTGTAC | |||||||||
gi|207473860|gb|FF341676.1|FF341676 BG02008A1A03.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): CCTGTGACCGCTACCTCCTAGCGGTGAGGGTGCCCTGCCCCAAGGAGGCGTACTGCTGCGGGAGTTCCATGGTGTACTGCATGGTTGGCGACCACCGCCTGGTGTGCGGTGTGCCCGCACGCGCCGTGCCTCTGCCCTGAGCCCGGCTGCGGCTTCCTCGGCCCGTCGCCGGCGCTCCGTGGCCACCTTGCCGAGCGCCACCAGTGGCCCGTGACTGACATCGCCTACGGGTCCATGCTGGAGCTGGAGGTCCAGATGCAGCCGGCACAGCGGGGGCAGCTGTTCTTGTTGGCGGCGAGCAAGCGCGGCGTCATGGTGGTACAGATGTAAGGTGTGGGTGCACACTCCCGTGGACGCGGACACCGACCACATGGACGTCCTGATGCTGGACGCCAAGGTGAGGAGCTGCGTCGTCCCCGGCGTGGAGGCGGCCATGGACGCGGGCGGCAGGTACCTGCCAGTGTCGGCCGACGTGCCGCCGCAGGAATGAGGGATCGTCCTCCGTCTCCGCATCAACAAGCAGGTCAAGGCGAGGAGCCCCCGTTCCTGGGGTTGACGATTAGCTGGTCAGCTCCGGTTCTTTATCTAATCTACTATATACTCCCTCCGTCCTAAAATAAGTGTCTCGTCTCAAGTTTAAACTTGAGACACTTATTTTGGGACGGAGGGAGTAGTATATATCTACCATGGCTGACGTTGGTGATTTGATAATGAACTAGCAGTGATCAAAGGTTGGACCTTGGTTGGGCTTTTGATTGATTCTTTCCATGGCAATGGTTGCCCATGTATCGCGTACCAATGTGGTTGATCCCTACTTGGCCTGTCCATTTTACTTGTTTG | |||||||||
gi|207463722|gb|FF349202.1|FF349202 BG02016B2C05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): ATTAGATTCAAATTTTTTAGAAACTTGGTAGCAAAGGTCTATTTTTCTGTTTTGATTTATTTCTCATGTTGAGGAACAATGGACAACAAAAAAAGAGACAGAAGTTCTACAGTGACATGTTTTGTGATGGCAGTAGCTACACTATGCTTGAAACAAAAATTCACACATCAGATACCTTTCTTTATTTTTTTTAAAAAAAATTCTCAGGTCGAAGCTGTTACTGTGCATGCGACTCAGAAGTACTTTGTGACCGCTGCCAAGGATAATACTTGGTGCTTCTATGATATTTCAACTGGGTCTTGCCTCTCACAGGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCACCCAGATGGTCTCATCCTTGGAACAGGAACTACTGAAGCTGTTGTCAAAATTTGGGATGTGAAGACTCAGGTTGGTACTGCAATTGTTTTCAGGAATAATTTCAGATGGTCATGCATATGTTGGTGCTTGAAATATACTACCCCCGTCCCAAAATATAAGACGTTTTTGCAGTTCAAATTTGAACTGCAACGTCTTATATTTTGGGACGGAGGTAGTATTTCCTAATGGACATTTTTTTTGTCTGTAGTCCAATGTTGCAAAGTTTGAGGGGCATGCTGGACCTGTCACTGCTATGTCCTTCTCTGAGAATGGTTACTTCCTGGCGACTGCTGCTCTTGATGGTGTCAAGCTTTGGGATCTAAGGAAATTGAGAAATTTTAGGACTTTCTCGCCATATGATTCGGACACGCCGACAAATTCTGTGGAATTTGATTTTAGCGGTACCTATCTTGCTGTTGC | |||||||||
gi|207434220|gb|FF340070.1|FF340070 BG02003X1G09.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): CTGTGTACTTCTTTCCATGCTGCTCCGAGCTGGTGGATGAGATCAAGCCTCGTTGGTTGTCCAACAGAAAAGGGTTCCGGTGGGCTGCAGCGAAATGCACCTAAGGTACAGTCATGGTTGTTTAGCACCAGGCAGCTTTTAATAGGACAATATCAACATTTTTAAGTCATGCAAAGAAGAATCACATGTTCCTAAAAACAGAGAACACTGAAGCAGAAGTTGATAATTAACCCCTCTGCAAATATTTTGGAACGGAGGGAGTATTAACCAGTGTCTGGGAAATGGTGTTTGTGTTCTATGATGAAGATCGTGTAATTATTTGCTCCATGCAAGCATACATGTGCTATAACATTGTTCTTGATGATATCCTGAATAGATCTATGGAGATTTTCATGGGTTCCATTCAGTTATCTTACTAATCTTATTAACCCTGATGCAGATATATTGGGAAACCACTCCATCTAACTGTCTGTCCTTCATAGATATCATTACTGAATTAGAGGTTTCTGGCACCAGATCAGGTACCACCATGACAATTCTTCAGAGTTGTTTTCAGACGAATCCCTGTCTAGGTCTTCAGATTCTTATGTTTTCCACCCTTGTTACAGGAGCAAACATGAAGATACTGTGGAGACAAGCCAAGAAGAAGGAACAGGCAATGAAGAGTGGCCCCTCTGCTCATACTCCATGACAGTTCTTCCCATTAACTGATCGGCCAAGCGAGGATAGGGGTTGATGGCACTAGAAAAGTAGTGTCTCGCCCGATTTTGTCATTGCTTCTTCGGACCTGATTGTTACGGTCTCATTCTCAGTTTCCGTTACAGCTCTAGTC | |||||||||
gi|207372147|gb|FF350323.1|FF350323 BG02013B2C08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTATCGAAAAGAGGAGCCAAATTAGTCGATGCTATTACACAGCACTCGGTGAGACCAAAACAGCTACTCCATCCGTTCCAAAATAAGTCCGTCCCAAAATAAATGTCTCAACCTTAGTACAACCTTATTTTGGGATGGAGGGAGCACTACGGACGAACAAATATTAGGTACAGCCACGGCGAAGCCTTGCAAATACTACTACGACACAGAAGACTCGCTTTATTAAACACAGGCTGAGAGTCTGAGAGACGAACCTCCCAGATTACATGACATAGCCTGACAAGCCAACGGCGGTACCACGTGACAGATCAGCACGGAAGATGCTGCGGTGGATTAGATGGGGATTGCGCCGGTGACGCGCGGGTACACGACCCTGGTCGGGTGACCCATGATGCGGCGGCCCTTGCGGTGGCGGAAAAGGTACACGGCGGCGCCCAGCGGCCACTCCACCACCCCGGCCACGACGAGCGCCACGAATCCCAGCGTCGGGCCGACCACCTTACACCGGCACGGGTTGCTCCTCGTCCCGCACTGCACGCAGATCGGCACGAACGCCATTGTTGTTGCTGAACCAGCCTCTGCTAGTGCTGTCAAATAGTAGAATGCTCGTGTTCGAAGTTTGATGGATGGATATATGCGCTAGAGATTGATGGTCCGCT | |||||||||
gi|207382165|gb|FF353884.1|FF353884 BG02026A1A12.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTAGTACGAATGTAACACATCAATTTGATGTACCAAAATGATTACAATCCACTGACGAAATGAAGATGACACAATGGTGTGTCAATAAATACAACACAATCTACATACATACATACACACACATACAGTGATTTGCTGCAGCAGCGAGTCTAAGCCGCTTTGGTGGACTTATAACAAATTTAATCGCGAATTCGTGATTTTGGTCAGACAAGATAATCTTCTTCTTCTACTACTTCTTTCTTAATTTCTATCCCTCCAATCCAAAATTAGTGTAGTTCAAAACCGCGACACTTATTTTGGGTCGGAGGGAGTACTAAATTATATCCATCAGATGCTCTGGAGCCTGCTGTTCGTCCCGCTGAAGATCTGGTTAAGGATCACCGCCAGCCTCACGCCCCCCTGAGCGATCCTCTTCTCGACAACCGGCAGCGCCCGGAAGTAATAGTCGTCTCCTAAGGTGTCGCCTTGCTCGACGCCCTCGTACGCGTCGCAGGCCAGCAATGCGCTCTCCTTGGCGTACCTGCATTCGATCATTCTCAGCCGTCAGATCCAGCCTCGGGGTATACATGTTCAGTTTTGCGGTTGGATTGGCAGGCTCGTCGTCATCGTGATCTGG | |||||||||
gi|207372146|gb|FF350322.1|FF350322 BG02013B2C08.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CCTCCGTCCCAAAATAAGTGT EST sequence (targeted fragment marked with yellow): AGCNNNCCATCAATCTCTAGCGCATATATCCATCCATCAAACTTCGAACACGAGCATTCTACTATTTGACAGCACTAGCAGAGGCTGGTTCAGCAACAACAATGGCGTTCGTGCCGATCTGCGTGCAGTGCGGGACGAGGAGCAACCCGTGCCGGTGTAAGGTGGTCGGCCCGACGCTGGGATTCGTGGCGCTCGTCGTGGCCGGGGTGGTGGAGTGGCCGCTGGGCGCCGCCGTGTACCTTTTCCGCCACCGCAAGGGCCGCCGCATCATGGGTCACCCGACCAGGGTCGTGTACCCGCGCGTCACCGGCGCAATCCCCATCTAATCCACCGCAGCATCTTCCGTGCTGATCTGTCACGTGGTACCGCCGTTGGCTTGTCAGGCTATGTCATGTAATCTGGGAGGTTCGTCTCTCAGACTCTCAGCCTGTGTTTAATAAAGCGAGTCTTCTGTGTCGTAGTAGTATTTGCAAGGCTTCGCCGTGGCTGTACCTAATATTTGTTCGTCCGTAGTGCTCCCTCCATCCCAAAATAAGGTTGTACTAAGGTTGAGACATTTATTTTGGGACGGACTTATTTTGGAACGGATGGAGTAGCTGTTTTGGTCTCACCGAGTGCTGTGTAATAGCATCGACTAATTTGGCTCCTCTTTTCGATAAAAAAAAAAAAAAAAAATCGGT | |||||||||