| mature miRNA: CCTCCGTCCCATAATGTAAGA species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|143800401|gb|CJ966322.1|CJ966322 CJ966322 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40m2 CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): TNCCCTCAAACGTAGCAATTCCATTCTATCCAGCTGCTGCTGCTGCCTACTGGGGCTGCATGGTTCCGGGAGCCTGGAACACTCCATGGCAGCCGCAGCCGCAGCCACAGTCTCAGTGTCAATCTAACTCACCACCTAGTGCTGCTTCTCCGGTATCGACAATGTCCAGTTGCTTCCAATCCCGAAAGCATCCTAGAGATGGTGATGAGGAAAGAGATACCAAGGGTAATGGCAAGGTGTGGGTGCCCAAGACGATCCGGATCGATGACGTAGATGAGGTGGCCAGGAGTTCTATCTGGTCACTTATTGGGATCAAGGGCGACAAGGTGGAGAAGGATGATGGCAAAGGCTGTAAGCTTGCAAGGGTTTTTGATCCAAAGGATGAGGCAAAGACGTCAAGCCACAGAGGTAACAATAGCTTGCCATTCTTGAAGGGGAACCCAGCTGCACTGTCGCGCTCAGTGAACTTCCAAGAGAGATCTTGAGCACCATCTGGAAATTCTTCATGCTGCCTTCTGCTACTATAAAACCATGTAGCATGATACAGCTGAAATTTTGTACATTAGATAATTGTATACTACTCCCTCTGTCCCATAATATAAGAGTGTTTTTTAGACTAGTGTACTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACTAGATAAGAGACATGGAGTGTTCAACATAGCTATAATCAGATCC | |||||||||
gi|143794413|gb|CJ960341.1|CJ960341 CJ960341 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul22n0 CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): AAATAATGAAAAATCTACCTTCAGAGGAAAAGCTCATTCGAAATGGCAATGGCAGTGTAAGTGGAGCTGATGGAATGCTGAAGGAGGCCTCATCAACTTGAGATATGTCTACCAGCTTACAGCATCACCATGGGTTTAGGATCAAAGATGTGGCTTGCTATACAGGCCAGAGCATACAATGTGCAATTTTCAGGGTGCAGGTCTGTATGCCTTGCCGGTACTCGAAGATTGACTGTAGTGCTGTTTGTATGCTGTATTGTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTGACATTATGCTAGTGTGAAAAACATTCTTATATTTTGGGATGGAGGGAGTATTATTTTTCCTGTATACCGGTTGATTTATTGATCTTGCAGTGCAACCATCATTTCGCAGGAGAATATAGCATCCCCTTGCT | |||||||||
gi|143798093|gb|CJ964016.1|CJ964016 CJ964016 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul34d1 CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): CTNTGAAAACCCTTTCGCTGTCCAGGAAGAAAACGACCATTACAGTGCTCAATCTGCCGAACAAGGGGACAAGGATGACATATACCAGTTCGNCCAAATTCTTCTTGAAGTGATCACAGGCAAACCGACGGCGTCCCAAAGCGAGTTGGAATCCCTGAGAGCCCAGCTAAGCGAGGCCCTGGCCGAAGACCCGGACATGCTGAAAGACATGGCCGACCCGACGATCCGCGGCACATTTGCGGTGGACTCCCTCAGCAAGGTGACCGAAGTGGCCCTCAACTGCACGGCTGGTGACCCGAGCGACCGGCCTTCCGTCGACGACGTGCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGCTGGGCGAGCAGCGAGAGCTTAAGCTTGAGCGTGAAATCACAGGCGTGAGTCAGTGCAATGCTCTTTTGTAGCGGTGCACCCTTATGGCTGGCCTTTTGCTGTGAAAGGGAGAAGCAAATGTTACTTATCCCCCGTATATAGAAGTGTGCCACTCCAGAGCATGGGGAGTATTTCTTGTTTGTCGTCGTAAACTCCAGCACTATTAAGTCCAAACCATTAGAAAGAGATCACTAGCTTTTCTTGTTTTTTTTGAAAGAGATAACTACTTCTTATATTATGGGACGGAGGGAGTAGCTTATTTTCTGCTGTTTGTTGTATAAACAACCAGGACCTATCCATGTTGAAACCATTAGATCACTAGCTTATGCTGACATCNNTGCTATCTAT | |||||||||
gi|222367313|gb|GH731862.1|GH731862 OV.002E03F010109 OV Triticum aestivum cDNA clone OV002E03, mRNA sequence CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): ATTTTCAAGGGAATATTACAAAAGGCAATGGCTTCTGTAGTTAAATTGCTTTATGAGATAATATTTTGCAGGACGTATTACTTCTACGAATTTCGTTTTGACAGACAACATGTTGCTCTAATGGCCACCGTGGATAGTGGGAAGACATATATCGCTGCCGCCACTGCTCCAGAGACGAGGTGGGAGACGGATGGAGTGACATTGCGTTCGGCTGCTGTATCTATGTCTCTCGTGTGATCTACACTAGTGTCAAAAATACTCTTATATTATGGGACAGAGGAAGTACTATTTATATATTAT | |||||||||
gi|177815318|gb|FF339728.1|FF339728 PST_C85 Transcript derived fragments (TDFs) from wheat leaves inoculated by stripe rust fung CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): GATGAGTCCTGAGTAAACACATATTCCCTTCGTTTCATAATGTAAGACATTTTTTGGCACTAGTGTAGTATCAAAAAACGTCTTATATTATGGGACGGATGGAGTACTTGTGTGTCAGTGTATTGCGTCTCTGCTCAATCAAATAAAAATCAGTTTATTTGTGTCGGTACGCAGTCTACAA | |||||||||
gi|143800537|gb|CJ966458.1|CJ966458 CJ966458 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul4d20 CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): GCGATCAGCAGCGGGGCCGCTCCTGCGCGAGGCCATGTCGACGCCCGTGCTGATGGTCACAGCGGAGCAGGCGCTGGTGGAGGTTGAAGGCCACTTTCAGCTCGTGTCAGGCCTCCCGGTTGTCGACAGCGCTCGCAGATGCATCGGGGTCGTCGTCAAGAGCGATCGTGTGAGGGCTTCACATGGGTCGAAGACGAAGATTGCAGATGTGATGACATCTCCAGCAATCACGCTATCATGCGATAAAACAGTGACCGATGCCGCAGCTCTGATGCTCAGGAAGAAGATCCACAGATTACCGATAGTAAACCAGGACAATCAAGTAATAGGTGAGTAACAGAAAACACGACAAAACCGGCAGTAATGTAGTGTTTTTTACACTAATGTAGGAGCGTTTTTTATACTACTCCCCCCGTCCCATAATATAAGAGCGTTTTTTACACTAATGTAGTGTCAAAACGCTCTTGTATTATGGGACGGAGGGAGTAGATCTGTATCATCCCCTTAACATCGACTATTGTTTGGAGTATGTTTCAAGCTTAACAGGATATTCTAAACACTGCTAACAGGTATAGTTACCCGCGATGACGTTCTTCGCGCGTTGGAGGCCATGCTGAAGTTTTAGTGATGCAGGAGTCCATGCCCGGTACTTGTGGATTTTGTAAATATGTGTGTCCGCGGTACTTTTGAGTAGCAGGCAGATCTATAGTCTGTAAAAGTGTAGTAGCCTGTATCGCAAAAATAAGCCTGGGAACTTTTAGGAGAGCTTTTCCTTGTAAAGAAGCACGCCCGGAAGCTTCTGCTCTGT | |||||||||
gi|222369095|gb|GH730827.1|GH730827 G750.121A05R010806 G750 Triticum aestivum cDNA clone G750121A05, mRNA sequence CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): GACACTACAAAAAATGCTCTTATATTATGGGACGGAGGGAGTAGCATACTGCTCAAAGTCTGTAACCAGTCATTAAATAGGCATGCCCATTAAATGAGTTCCAACCATACCCTCCTTTCAACTCTCAGTGACTCTGCAGTCTAACAGACGGACACAACACGACGATTGCAAGTTTGCAACACCCTTTCCGTTAGCTAATGGCTTTCTGCGCCAAGAACATCCATTGTGGCAGCCAATTCACCTGCAAACTATTCTTAAGGCTTGATCCTTGCAGGATGACTGGTTTGAACCCCTGGGCTTCGGAAATCCTTGCATTTGGTACTCCAGGGAAGACATAGCTGCATTCTATTAAGTACATACACTTGCCTCCAGTTTGCACATTCCTTTTGTTATACCTATGATGCGCCTCTGCATTATCCAGCCCTCA | |||||||||
gi|222364414|gb|GH726526.1|GH726526 G174.109C02R011122 G174 Triticum aestivum cDNA clone G174109C02, mRNA sequence CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): GGCAAAAAAAAAAAACTGGGCTTCATAGTCCACAGTTGAAGAATACAGAGACAATTCTCTGGCTAATTCTCTGTTATGTTTAACAGATGAAGAATTCGAAGGCATCTTACTAATCAGATCAGCAACTACTTCCTCCGTCCCATAATGTAAGACGTTTTTTGACACTAGCATAGTGTCCAAAAACGTCCTATATTATGGGACGGAGGGAGTAATATTCATGACACTCATCCTCATACATAGGCCAGGCATGTCTGGGTACAAGTTTTGTGGTATTACTTCCGTTTCACATATTACCACCCATCACGTGAAACTAGCTTTAACAACATTTCAGACATCTCTTAAAATCAGACCGCGGCTGACTTCTGCAGGTTGCCCATTCCAAACAAATTCTCGAACAATTTCGAAGCCATTGGAGGAACCGTCATAGGCACCGGGGCCATGAAATTAGCAATCTTCTCGTGAACGCTGTACCTTATCTTTCTGCTCTTTGAAGCGCGGCGATCGACGAGTTTCCTCTTCTTGTTCTGCTTCTTCCTTAGAGCATAAAATGCAGACTCAGATGCTCCATTATCACATGACTCGAGAAACTCCTTGAGAAGTTGATGGTAAAATTCAGAATCATCAATAAGTTCAGGATCACCTTCCACATCCTTCCCCTCAACGGTAGTAGCAGGCTCTGCTGCACTCTCCCCGAATACACCAAACATCAGATTCCCCAAGTAAT | |||||||||
gi|143795074|gb|CJ961002.1|CJ961002 CJ961002 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul24p2 CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): ACTGTNGGATGCNAAGGACCACACAAAGGATATCAAGTTGTTTATTAATTCACCTGGAGGCTCCATTACTGCAGGAATGGGGATTTATGATGCCATGAAATTTTGCAAGGCTGATATCTCAACTGTTTGCTTTGGATTGGCGGCTTCCATGGGTGCATTTTTGTTAGCTGCTGGGACAAAGGGAAAGAGATTTTGCATGCCAAATGCGAGAATTATGATCCATCAGCCATCAGGGGGAGCTGGTGGGAAGGCCACAGAGATGGGATTGCAGATAACAGAAATGCTCTATGAGAAGATAAAGATCAACAAGATAATGTCAAGGATCACTGGAAAGCCTGAAGAGCAGATTGACGAGGACACGAAGTTTGACTGTTTCATGAGTCCTTGGGAGGCCAAGGATTATGGAATAATTGACAGCATTGTAGATGAGGGCAAACTTGGATTGGTAGCTCCTGTATCGGGAGCTGTGCCACCCCCAAAATCACGTGTGTGGTACTTGTGGAACGCTTCAGGACCAACTAGAAAAATAATGAAAAATCTACCTTCAGAGGAAAAGCTCATTCGAAATGGCAATGGCAGTGTAAGTGGAGCTGATGGAATGCTGAAGGAGGCCTCATCAACTTGAGATATGTCTACCAGCTTACAGCATCACCATGGGTTTAGGATCAAAGATGTGGCTTGCTATACAGGCCAGAGCATACAATGTGCAATTTTCAGGGTGCAGGTCTGTATGCCTTGCCGGTACTCGAAGATTGACTGTAGTGCTGTTTGTATGCTGTATTGTACTCCCTCCGTCCCAAAATATAAGAACGTTTTTGACATTATGCTAGTGTGAAAAACATTCTTATATTTTGGGATGGAGGGAGTATTATTTTTCCCTGTATACCGGT | |||||||||
gi|222370547|gb|GH727093.1|GH727093 G356.113A20R011030 G356 Triticum aestivum cDNA clone G356113A20, mRNA sequence CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): GATCAAAAACATTCTTATATTTTGGGATGGAGAGAGTAGCAACTACAATGCCTGCACCCAAAAATGGTACAGCCGATCAATTCTTCAACCGTAACATACATCTGCAACACAGTTCAAATTACCCAAATTTTGCACTCTTTTGCCATCTTTTCAAAACACAACTACTCGGTAGCTCATTCAGTTTTGAGCTTCTCAGCACTAGGTTAATATGGCGGCACGGGATTCCTACCGACTCAAATAGCTTGCAGGAGCAGTTGGCCGTCATGGTGATTGCGTCCCAGCGCACCTCCCTAACTTTGTCGGAGTCGTCACCACCGATGGCCACAGTTTTCACCCCCTCGGTTTGTGCCATGTCTTCGACAACGCAATGGTCTCTAGCAGCGACAATCTCTTCTTGGAATCTCTCAAACACCTCATGTGTGAACACTACACTTCCATGCTTCTCCAATCCCCATGGTGTTATCAGTTGAGGCGTCGTATGGGCGCTCGTGTGATCTGCATTCGATTCCTCTTGACGCTGGCACTCTAAGGCTGCTTCAAACCTAAGCCAAAACTCAACCAAAGAGAGCTTCTGGTTGATGAAACAGTTGAAAAATGACTTTGCGCTCTTTGACCATGCAGTGCTTCTGAGAATGCCTGACAGATGGATATCCGTCGAGTAGGCCAAAATCCATCTTTCACGGGCGGAATACCTTTCAGCCAGCCACTGATTGGCCTGG | |||||||||
gi|222365319|gb|GH726333.1|GH726333 G174.101J12F010821 G174 Triticum aestivum cDNA clone G174101J12, mRNA sequence CCTCCGTCCCATAATGTAAGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTGATGTTAAGGGGATGATACAGATCTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACATTACATTAGTGTAAAAAACGCTCTTATATTATGGGACGGGGGGTGTAGTATATATAAGTCCTTTACTGCT | |||||||||