| mature miRNA: CCTCCGTCCCTAAATAAGTGT species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159694743|gb|EY062463.1|EY062463 CATF645.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDNA CCTCCGTCCCTAAATAAGTGT EST sequence (targeted fragment marked with yellow): GTTTGTGTTATATAATACTTGATGAAAATTATACCAATGAAAATACATTTAAAATACAATCCATTCATATATTTTGCATCAAGTACTATATAACAAAAAAAAAATAATAATTAAGGTCAAAATTGAAAAAAATTGACTCCAAAAAGTCAAAGTGGACATTTATTTAGGGACAGAGAGAGTATAACATTTTTTGTAATCTTAGAAAATTAAATGAAACATCATATAGCTTATAAATATCTATAAGCTCCAACTCCAGAGTTACAGCAAAAACTATTATTGTCAAACATACCTTTAATGAGTTTTATCTTAAAAATATGAGGAGAGTTCAATTATTATATATAAATATTTATTTTCAGTTTAGTATAGCTATTCAGTGTTTGAAAATACATATTAGTGTTAAATCGTATGTGATATGTCATTCGTATTTATATATTGAAAAACATATTATAAAAAAAATGAAAAATAAAAATTCATCGAAAATATATGAAAGTGTCTATAAAAGTATAATAAAATAACTGTCAGTGATAGTATATTTTGTTTTGTTTAGTGATTAACTATTCATAAAAAGGATAACGGCATTGAAAAACCTAATTAGTCAAAAGTAGCATAAGTTAATAGGTTAAATATTAAAAAGAGTAGATAAAATAGGTACGATTAGTAAAGTTTGGGTATTAATATTTAATAGTAGAATCCTTTTGGATATTCATTATACCTGCCTTTTTCCTTTGTTAATTTTCATCTACTCTATGCT | |||||||||
gi|159629559|gb|EY071564.1|EY071564 CATG458.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA CCTCCGTCCCTAAATAAGTGT EST sequence (targeted fragment marked with yellow): ATAATTGCTGTCTCCTAATAACATCCAAATTATTTTTAAGAAAAGCCTTGTTGGGATGATCAAGTCACAGAATATGATGAAAATATAATAAAAGGCCAAAGTATAATAGTGGAGTACATTTTAGTATCTAAAATTAAACCTTTAATGCAAATCAAATTTGAATTAATCAAGCGGTACCTTTTGTAAGAACATCCAGTTCCCCCGTGTTCTGATGCTCGTGAACCTATAATAGAAATAAATTAAAGACGAGATGATCCAATAAACTCTGAATTAACTTAAAACTAGTGAAAAAGCTATTAGTATCCCACACCTCAAGACTTTTTTTTATCTGTGTGTAGCTCTTATGATGACAAAGTTTTCAACAAGATAATACTAAAATACTCCCTCCGTCCCTAAATAAGTGTCCACATTTGACTTTTGAAGTCTTACTTATTCAACTTTGACCTTAAATATTATTGTTTATTTTATATAATACTTGATGCAAAATATATGAATGAATTGAGTTTTATGTGTATTTTAATTTGGTATAATTTTTATCAAGTGTTATATAACATAACTAAAAATATTTAAGGTCAAAGATTCAAAAAAAGACTTCAAAAGTCAAACGTGGACATTTATTTAGGGACGGAGGGAGTAACTCATTTTACACGAAGACAAGTTTTCAACACGGTTATTAATTTCCTTGTCACTGTGTTA | |||||||||
gi|159639821|gb|EY115537.1|EY115537 CAZI942.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI942 CCTCCGTCCCTAAATAAGTGT EST sequence (targeted fragment marked with yellow): TTTGTGTGTGATATATAATATTTGATGCACAATATATGAATAGATTGGGTTTTAAATGTATTTTCATTGATATAATTTTCATCAAGTATTATATAACACAAACAAAAATATTTAACGTCAAAATTGAAAAAGAAAGACTTCAAAAGTCAAACGTGGACATTTATTTAGGGACGGAGGGAGTATTTATTAGTACTGTTTATCTTGTTCTCTGTTTGCTTATTAGTCTCTTAAATCTTTTTCGGGAGCAAAGATGGCAAATTATTTCACGGCTTATAGGATAGATCACATATTGGGTTTCTTTAGAATTTGGGAGCTTCCGGAACATGCCATGACAGGTTTAGTTGGGAAATTCCGTCCATCTATACCACTTAGCCAGGAAGAACTTGAAAAAGAGGGGATATGGGATTTTGATCGATTGAGCAAACCGTACATTCTTCAGGAGCATTTACAGGAAATATTTGGACCGTCATGGATAGTTGTGGCTTCTCATTTCATGAATGAGATTGAGAAAAATCGTTATCAGTTCAAAGACGACTGTAATACAGAGAAAAAGATTGCTGCCAAGCTGAAATCGCTTATTGAGAAGTCATTGTTGTTGGAAAGTGAAGACAAATTAAGGCGTGGTCTCTTTGATCTTGTGCAGAATATAGTGCTTATTAGAGACCCTGAGGATGCTAGAAGCTTTTATCCTCGCTTTAACCTAGAAGATACATCTAGTTTCAAGGATTTGGATGATAACAGCAAANATGTTCTTAGAAGATTGTATTATGACTACTATTTCCAGCGACAAGAAACTCTTTGGCGCCAAAATGCCATGAAGACTTTACCTGCTCTGCTAAACTCGTC | |||||||||