| mature miRNA: CCTCCTCAAGGAACGTAAAAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29631597|gb|CB636606.1|CB636606 OSJNEa02E17.r OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa02E17 3', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): GGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTTTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTTTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTAAAAAAAA | |||||||||
gi|66916028|gb|CX102876.1|CX102876 RECm3881 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): GTATCTCCGTGGTCCACCNGCGTTAGCGACCGCGCTGCCCCCTGCGTTTAGGGGTTCACGCTTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGCAGCAAGTAGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGTGCTGGTGAAGGTGCGGTGTGGTGAGTGGGCGTCAACNCTCGCCGTCCGCAGACCTCCTGCTCCAGCTGACCCNCTACGCTCATCTGTCCGCGATGGTGCAACGCAGAACGTTGAACGACACGCAGTCATAAAAAAGGACTACCAATCCTGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTGGAAGTGTATGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGAGGTTGTCAAGATGAAGATTGAGGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTGAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGTGTATGAACTCTGTACTCTGCCTATTGCTTACAGTCTTGCATAGCTCGCAAATCCAACTCTAAATTTACCAGTGGACAATCAAATAAGCAACAGCTTATATTGATGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAATGGCTGTAAAATCATTCTTATGTTGACACAG | |||||||||
gi|29659280|gb|CB655555.1|CB655555 OSJNEc09B17.r OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc09B17 3', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): GCACATATGGGTACATGTCACCGGAATATGCGATGCGAGGCAACTACTCCCTCAAGTCCGACGTGTTCAGCTTCGGCGTCATGGTGCTGGAGATCGTGACGGGGAAGAAGAACAACGACTGCTACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTTAAAAAAAAGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGC | |||||||||
gi|29627621|gb|CB632632.1|CB632632 OSIIEb11A03.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb11A03 3', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): ATGAACATGAACCCGAAGATCTCTGACTTTGGGCTCGCGAGGCTCTTCGGGCGAGACCAGACGCAGGGGGTCACCAACCTCGTCATCGGCACATATGGGTACATGTCACCGGAATATGCGATGCGAGGCAACTACTCCCTCAAGTCCGACGTGTTCAGCTTCGGCGTCATGGTGCTGGAGATCGTGACGGGGAAGAAGAACAACGACTGCTACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTT | |||||||||
gi|29676252|gb|CB672527.1|CB672527 OSJNEe06J16.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe06J16 3', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): CCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTCTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCAAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCAGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACCAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGAGAGTAATTTTACGGTCCTTGAAGAGATTACATGAGGTTTTACTTTTTCTATTGTAAATTTGTTACCTAGGTAATATGAGGTACCAAATTTTACATTAAATTTTTGGTAACTCATGGAACCTCCTCAAGCACTGTAAAATTGCTCTTTTTAATCGTAGAGGATGGAGAAAAGGGTAAAGTTTTTGTT | |||||||||
gi|29679217|gb|CB675492.1|CB675492 OSJNEe11E09.f OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe11E09 5', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): CACTTCGGCGCTCTCCCACGTGTCGCGCCGCTGCTGGGAGTCCGTCCCCTACCTCACCTTCTGTTGGCCACGCCGCACGCCCCCCGGCGCCATCAGCACCGCCCTCCGGCGCTAATCCGGCCTCGTCCGCAAGTTTACCAACTTGTATATCGGGGAGGAGGAGGAGGAGGAGGCGCCGTTCCGCTACTCCGACCGCTGGCTGCTCCTCCTCGCCGGGAAGGGGGTCCAATCCCTCTTCCTTGCTTTCTGACGGTCGGACGAGGAGATCCCTATGCTGCATTCTCTATCTTCTCGTGCTGCGAGCTCACCCAGCTCGAACTTGCAGACTGCTACATCCCAGGGTTGCCAACCTGCTTCGCGGGGTTCCCAAATCTAACCAGTCTAAGATTATCAGATGTTGGCTTCCCAGATGGAGCAAAAGGATTGGAGATATTGCTCGCTAGATCGCCATTGCTAAAGAGCCTTTCACTCCTGATGTTGCTGTTTCCTGCTAAAAACGGGGTGTATCACCAGTGGGTTATTCAGGCTCCAAATCTCCAGAACTTTTTTATTACTGGACTGTATGACGATGGTTGGCAGATCGGTGATCTCACGTTCCTTGAGGAAGCAACAGTCGATTGGCCATTATACTCATATGACCGTGATTTCGTCAAGCTTATTACAGGGTTGTCTCAAGCAAGGGAGCTCGACTTTGCAATGCCGGTGAGAGATGTTAATGTTCTGGAGGGACTGTCGTGCTCCTTTAAGAATCTGAAATGTTTATCGTTATGTACAAGTCTTCACTTGTTTGTCAATGTTTTGTCGTTTCTTTGTATAATCAAGAATGCCTCTAAACT | |||||||||
gi|29640981|gb|CB645988.1|CB645988 OSJNEb08B20.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb08B20 3', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): CATATGGGTACATGTCACCGGAATATGCGATGCGAGGCAACTACTCCCTCAAGTCCGACGTGTTCAGATTCGGCGTCATGGTGCTGGAGATCGTGACGGGGAAGAAGAACAACGAATGTTACAACTCCCTGCAATCCGAAGACCTCTTAACCCTTGTGTGGGAGCAGTGGACGGCGAGGGCGGTGTCGGAGGCGGTCGACCCGGTGATGGGCGGCGGTTTCTCGTGGAGCGACGTGATGCGGTGCATCCACATCGGTCTGCTCTGCGTGCAGGAGAACCCTGCGGATCGGCCGGTGATGTCGTCGGTGGTGATGATGCTCGGCAGCGACACGGTGTCGCTCAGGGCGCCGTCCAAGCCGGCGTTCTGTGCCAGGAGGAACGGCGGCACCGGCGGTGCCGGTGCCAGCTCGGGGGGCACGTCGTTTGGTACGTCGACGGCGGCGTCGGTGCAAGGCAAGTAACTGTAGAAGTGTGCAACGGTGAAACTGTGCTCGCTGTGTGGGATCTGCCATTCCGCTGAAGCATTCTTTGCCAGGTTAGGTTAGGCTTTCATAAGTATATAACGCAATGTACCAGACTGATTACCATAAAGAATCAAAGACAGCAAAATATACTGAAAACTTGTGGTTCGGTGGCTCCATGGAGCCTGAGTTCCTGTGCTACAAACACAGTGATTTCAAAATATTTGTAAACTTTTGTAATAGGGGGTAATTTTACGGTCCTTGAAGAGATTAAGCATTTAAAGGGAAACAATCTCGAGGGGGGGCCCGGTACCCAGCTTTGTC | |||||||||
gi|29635969|gb|CB640978.1|CB640978 OSJNEa17E22.f OSJNEa Oryza sativa Japonica Group cDNA clone OSJNEa17E22 5', mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTAAGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGNGCTCCT | |||||||||
gi|66924381|gb|CX111229.1|CX111229 EI057B11 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): CCCACGCGTTCGCCCACGCGTCCGCATTTTTCAGCGATTATGACCCTCGAGCTGCTGCAGCTAACCTCCCTTCCAGTGTACAAGCATACCTTGCCGGACTTACGTTTGCATTAGCAGCATCACCTTGCAGTACACCTGTTCTTGCTACCCTTCTGGGATATGTTGCCACTTCAAGAGATCCGATTGTTGGGGGAAGTTTGTTATTGACTTATACAACTGGCTATGTTGCACCTCTTCTCATTGCAGCTTCTTTTGCTGGAGCACTGCAGAGTTTGCTTTCCTTCAGGAGGTATTCTGCATGGATAAACCCAATCAGTGGTGCATTTCTACTGGGTGGAGGGGTTTATACCCTACTGGACAGGCTTGTTCCTGCAACATCAATGGTGATGTAGAATGCATATCATAGTCGAACAAGAGCTGCAGTA | |||||||||
gi|44679671|gb|CR293105.1|CR293105 CR293105 Oryza sativa library (Han B) Oryza sativa cDNA clone y782c01p3, mRNA sequence CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTGGCTATTTGTACCGGTCAGCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCATCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTAGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGACCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGGCCATTTCGTAGCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTTAGAAATTAGGTAATCATAAGATTGGGGAGTAAGGGCAGGGGGAGAAATTGTAGAATGTTGTCGGGAAATGGAGGACTGGGGAGAGCAGCAGAAGTTAACGCGCGAGGGTAACCGGGACAAAAGGGGCGAATCCGGGGTACAACCAACGGGGACGGCCCCGCGAAAAAAAAAAACGGAGCCAAGTCGCAGCAGGGGGAGACCAAGGCACAGACAGAACGGGGGAG | |||||||||
gi|58666506|gb|CK055192.1|CK055192 56492rsicek_11069.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G CCTCCTCAAGGAACGTAAAAT EST sequence (targeted fragment marked with yellow): GCACGAGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTGGAAGTGTATGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGAGGTTGTCACGATGAAGATTGAGGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTGAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGTGTATGAACTCTGTACTCTGCCTATTGCTTACAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTACCAGTGGACAATCAAATAAGCAACAGCTTATATTGATGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCCAGTGCCTCCTCAATGGCTGTAAAATCATTCTTATGTTG | |||||||||