| mature miRNA: CCTGGTCATTTTGTTTACAGG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|193218890|gb|EY197417.1|EY197417 BC_003_90 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequen CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): AACGGGGGCTCGCGCGCCTGCAGGTCGACACTAGTGGATCCAAGAATTCGGCACGAGATCTGATTGACCAGTACAATAGTGGAACTCTGAGTTGGTATGAGTTCTCAGATGCTGTGAACGAATCTCATGAAAGTCGCAAGGGGCAACCAACTCAGAGGTTGGTGATTCCTGACAGGCCTAAGGAAGAGGATTACTTCTATGCGAATCCAGAAGAATGCTTGCAGCCATCATATAGTCGATTAGATCTTTCTGTTGGGGGATTGTGACATTTACCAGTACTGGTATACGGCTAGGATAATACCTGAAAGTAAAATGTAGTTTTCTTCCAAGGAGGCTACTGCGGAGATGATTGGGGGACAGAGAACTCAAAGAAAGCCCAAGGGTCCTGTGAAGCAGCTGGAGGGCAAAAAATATATAATATATGCAAATAATCAGAAGCATATGTAGAAGAGCTGCCCTGCCTTTATAGGCTACTACCAGATCAAAATGTGTTGTACAAAAGAGGGATGCAAGTTTAAATTCGGATTAACGATACTGGACATGGAAGGTTAATCCCTCTCCCTTCTTGCACTATTTCTTTTTTGTTTCCTTTTTAGATTGCTTAATGATCTCAGTTTCTAGCATATATCACTGTCTAGAAATAAATTCATCTTGTCACAGCCTACTCAGACCATCGGCATTTTGTTCTAGTATGACCCCATAAATGCAGGGAATGGTTGAAAGCATTGAATATCGACTTTACTACACTTGTAAATTAAATGACCAGTACTTGACTTCAAAAAAAAAAAAAAAAAACGCGAGACTAGTTCTCTCTCTCCTCGTGCCGAATTCGGCACGAGAAAAAGCGAAAACTGCTCGATGACGGTAATGATTACCTGCCGTTGCTTACAGACGCTGCTAGTTCAGTAAATCCTAGCAGATGTTCTGAGTATGTGGATGATGCAGATCCTAGCTGTGCCAATATGGAATCCTCTTCAAGTAATAAGAGACTGAGAATCGAA | |||||||||
gi|164355443|gb|EV499142.1|EV499142 sg158B08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCTTTAAACAAAATGATTAGTAAAGCTTTATCCATCCACTTGTTCACTTAAATTATTGTTTGATTGAAGCTGACCTCACTCGTGATGTACGTTATTTAGAAATACTCTTTTTTTTTTTGTACATCTGAAAGCATCGCTAATGGCTATAAGCGTTTAAAAAAATTAAAATAAAAAAGATAGGAACTTGAAAAACAAAAGTCACCATATTTAACTGGAATTGACGGGCGCACAACCCCATGTTCAAACAATGCCGGCGAAAAAAGGAAAAGGAAAAGACAAGATGAAATACAAAAGAGCTTCTCCAATTGAAATTACAAAACAGAATATTATTCTCCAAGAAAAACCGGCCCAATGTTATTTAACAGCTTAAATTTACTCCTCTGCCAATGGAACTGATTCAGCCAGCTTGCGGTACTTAAGAGCATAAAACATCTCAAGGTAACGACGAC | |||||||||
gi|109885269|gb|DW514239.1|DW514239 GH_TMIRS_180_D12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): CAATCATATAGTCGATTAGATCTTTCTGTTGGGGGATTGTGACATTTACCAGTACTGGTATACGGCTAGGATAATACCTGAAAGTAAAATGTAGTTTTCTTCCAAGGAGGCTACTGCGGAGATGATTGGGGGACAGAGAACTCAAAGAAAGCCCAAGGGTCCTGTGAAGCAGCTGGAGGGCAAAAAATATATAATATATGCAAATAATCAGAAGCATATGTAGAAGAGCTGCCCTGCCTTTATAGGCTACTACCAGATCAAAATGTGTTGTACAAAAGAGGGATGCAAGTTTAAATTCGGATTAACGATACTGGACATGGAAGGTTAATCCCTCTCCCTTCTTGCACTATTTCTTTTTTGTTTCCTTTTTAGATTGCTTAATGATCTCAGTTTCTAGCATATATCACTGTCTAGAAATAAATTCATCTTGTCACAGCCTACTCAGACCATCGGCATTTTGTTCTAGTATGACCCCATAAATGCAGGGAATGGTTGAAAGCATTGAATATCGACTTTACTACACTTGTAAATTAAATGACCAGTACTTGACTTCACATTTAGTGTTGGTGACTGGGGTCTTGCCTTCCTGTTGGGGGAAATATGGTCCATCCTTATCAATGTCAATAACGCCTATTTATTG | |||||||||
gi|164318460|gb|ES836131.1|ES836131 UFL_016_70 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): AAAGCCCAAGGGTCTCGTGAAGCAGCTGGAGGGCAAAAAATATATAATATATGCAAATAATCAGAAGCATATATAGAAGAGCTGCCCTGCCTTTATAGGCTACTACCAGATCAAAATGTGTTGTACACAAGAGGGATGCAAGTTTAAATTCGGATTAACGATACTGGACATGGAAGGTTAATCCCTCTCCCTTCTTGCACTATTTCTTTTTTGTTTCCTTTTTAGATTGCTTAATGATCTTAGTTTCTAGCATATATCACTTTCTAGAAATAAATTCATCTTGTCACAGCCTACTCAGACCATCGGCATTTCGTTCTAGTATGACCCCATAAATGCAGGGAATGGTTGAAAGCATTGAATATCAACTTTACTACACTTGTAAATTAAATGACCAGTACTTGACTTCACATTTAGGGTTGGTGACTCTGGTCTTGCCTTCCTGTTGGGGGAAATATGGTCCATCCTTATCAATGTCGATAACGCCTATTTATTAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164281979|gb|ES848155.1|ES848155 UFL_151_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): CAAGGGCGAGAGGCAGAGCGAGAAACAGAGTGAGAGAGAGGGAGACAATTATGGGAGCCTGGGCTATTGCAGTGCATGGTGGCGCTGGTGTAGACCCAAATCTCCCTAAGGAAAGACAAGAGGAGGCTAAGAGACTCCTCACTCATTGCCTTGATATAGGCATCTCTGCTCTCCGCTCTAACCTCCCCGCCATTGACGTCGTTGAACTTGTTGTTAGAGAACTGGAAACAGATCCTCTGTTCAACTCCGGGCGTGGATCTGCTCTTACGGATAATGGAACGGTGGAAATGGAAGCCAGCATTATGGATGGCCCAAAGAGGAGATGCGGCGCCGTTTCAGGCTTAAGCACTGTTAAGAACCCTGTCTCCCTTGCCCGTCTTGTCATGGACAAATCACCCCATTCTTATCTGGCCTTCTCCGGTGCCGAAGACTTTGCCAAGAAACAGGGAGTGGAGTTGGTGGACAATGAATATTTTATTACGGAAGATAACGTGGGGATGCTTAAGTTGGCAAAAGAGGCAAACTCGATCCTGTTTGATTACCGTATCCCAACGATTGGCACCTGTGGTGCGGGGGCAGCCGCCATGGAAAGTCCTTTGCAGATGAACGGGCTCCCCATCAGCGTCTACGCCCCAGAGACGGTTGGCTGCGTGGTGGTTGACAAGGAGGGTCGGTGCGCTGCCGCCCACCTCCACAGGTGGGCTCATGAACAAAATGACCGGGAAGGATTGGTGACTCCCCGCTTATTGGCTCCGGAACCTACCGCTTGTAACTTGTGTGGGGGTGTTATGCACATGGGGAAAGGAGAAGACATCCATCCCAAAGCCCCTGGGCGAGGGAAGTTAGGCCGCGTTGATGGAGTACCCAGGGAATCGAAACCTGGATGAGGGCTGTCAGATTTTTGGGAGTCACACAAAAGGGGGGGAATGACACACAAGCTCTTGGCTAAGTTGTTGATTCTCAAAGATACGGGGAGGCGTTCCTTAGTGGGGTTTAATACCCACCCGGAATGTTTGGAGGG | |||||||||
gi|84159223|gb|DN828287.1|DN828287 G.hir-45, 60 hrs post inoculation 609 Leaf cDNA 45, 60 hrs post inoculation with Xanthomonas CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): GCCAGCTCAGAATTAACCCTCACTAAAGGGACTAGTCCTGCAGGTTTAAACGAATTCGCCCTTAGCGTGGTCGCGGCCGAGGTACCGGTAATCATGTTCTTGATAAAGTCACGGTGTCCAGGTGCATCAATAACGGTGCAATAGTATTTGGTGGTCTCAAACTTCCACAGGGCAATATCAATGGTGATACCACGTTCACGCTCAGCCTTAAGCTTGTCAAGCACCCAAGCATACTTGAATGACCTTTTGTTCATTTCAGCAGCCTCCTTCTCGAACCTCTCAATCACACGCTTGTCAATACCACCTAGCTTGTAGATCAAATGACCAGTAGTGGTCGACTTGCCAGAGTCGACATGGCCAATGACAACAAGGTTGATGTGAACCTTCTCCTTACCCATTATAAAACTCTGGAGAGAAGCTGTAAGCTTAAAGAAAACCTGCCCGGGCGGCCGCTCGAAGGGCGAATTCGCGGCCGCTAAATT | |||||||||
gi|164341535|gb|ES851794.1|ES851794 UFL_657_01 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CCTGGTCATTTTGTTTACAGG EST sequence (targeted fragment marked with yellow): GGCACGAGAAACTCTCCCTTACAGCAGTTTTGGATAACTCTTACTTTCTCCCTCCTCCATGGCCTTTGGTCTATCTTCCATTTTTGTTATCACGATCTTTGCTATCTCCTTAACTAACCTTGCACCAGTGTCGTTGGTGCTCGCCAGAAAGCCATGTCGATTCCATGCAATATTCAACTTTGGTGACTCAAACTCCGACACTGGAGGCTTGTCAGCAGCATTTGGCCAAGCTCCTCCTCCCAATGGGTTCTCTTATTTTGGCGGCCCCGCTGGCCGCTACACCGATGGTCGCCTTTTGATCGACTTCATAGCCGAGAGCCTTGGGTTGCCATACCTAAGTGCATTTCTTGACTCTGTGGGGACTAACTTTAGCCATGGAGCTAACTTTGCCACTGCTGGATCCACCATTAGACCTCAAAACACAACTCTGCAACAAAGCGGTTTCAGCCCTATCTCCTTGAACGTTCAATTTTACGAGTTCAATGATTTCCATGCAAGGACACAAGTTGTACGTAAAAGAGGTGGGGTTTTTGAAATCTTAATGCCAAAGAAAGAACACTTCTCAAATGCCTTATACACCTTTGACATCGGCCAAAATGATCTCACTGCTGGTTACTTCTCAAACATGTCTACTGATGAAGTTAAAGCCTATGTTCCCGATGTGCTTAATCAGTTCCAGACAATAATTCAGTATATATATAACCAAGGAGGGAGATACTTTTGGATACACAATACAGGTCCTGTTGGGTGTTTACCATATGTAATGGAGCGTATCCCGGTCTTAGCAGGTCAAATTGATGACTATGGATGCGCCTCTCCATTCAATGAAAGTTGCTCAGTTTTTCAACCGTTGAATTGAAAAAGAATGGTGGAACAGTTACCCCAAAAATTTTGCCCCATGGCTGCAATTCACTTTACGTTTGAAGGTCTAACTCAATTGAAAATACTTCCCTAAATTAACCCAAAGGGAAGCCAAAGCATGGGGGGAAGGTGAATTCCCCTTTTTATGAAAAACAAACTAAAAAAACTTTCCTAAAAACAAAATAACCAGGGGGTTTGAAAATATTTTCCTAAAAAAAAGGGTTTTTTGGGGAATTTTTAAAAAAAATTGTGGAAATTGGGGAAATTTTGAATAATTGAAAAAAACAAAAATTTTTTTAAGGGGGGGGTTTTACCAAAACACCACCCCCCCCCCTCTTTTTAAAAAAAAAAAAAAATGTGTGCGGTCGGTGGGGGGGGCGCCCCCCCCCGGGGGGG | |||||||||