| mature miRNA: CCTTCTCATCGATGGTCTAGA species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308688654|gb|DK564401.1|DK564401 DK564401 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone CCTTCTCATCGATGGTCTAGA EST sequence (targeted fragment marked with yellow): CATTTGTAGTTAGAATCTACCAAGTAATATTACGTATCAATGTACAAGCAAAATTTTATCTTGCAGCTATAAATGGATAAATGAGAGAACTAGTGACAACAAGTCAAAAAGTCAGTTTGCTCTTTCATCGATAAACACTTTGCTTTTTTTTTTTCTGACTTCTTTAGCTCTTGCACTTCTTCAGTTTTTGCAAAGGACCTGGCAACAGAGTTATTGCTACATGCTTCTGTATTCATCGTTTACGTTTAGTTTGAATAATGGTGTGGTGTACTCAAACCTGAAGAAAAAAACTTCACATAGCGCTATACTCGGAAGTATCCCAAGTGTTGCATTAGCAAATCACTGATTCAAAATCAAGCAATATTACGATAATGTCACAAGTTGAAAATCTCTAACCTTTTTAAGAAATACCATTATGGTGAATGCTTCCCATAGTCACCGTATCTCTTTTACCTCAATGAGAGTCACCTCGCACATCTAGACCATCGATGAGAAGGGAATAATAACCCAGCACCTTCCCCCACTCCCCAAGTTATTTACTATGAAGTAATCTAGTGTAGCTAACTAGTGCAAGATTCAAGTTCTTAGCTATCATGAAATACCTCTAACACTCCAGACAGAGGTTTGACATCTCTTAGGCAAAATGTCTGTCCGAAGTGTGGCATAGTCCAAAAACAAGGAAAATATTATGTATGCAGCATCCAGAAATGTCATGAATGGACTTAATGTATTTTATTTTATACTTAACTCCTGAATGATCTGATTATGCT | |||||||||
gi|308619327|gb|DK568085.1|DK568085 DK568085 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clon CCTTCTCATCGATGGTCTAGA EST sequence (targeted fragment marked with yellow): CCATGTATAATTATATTCATGTGCCATTAAAAAGATAGATACAAAGTCTTTCATTCGGGAGTTAGAATCTACCGAGTATTTGTAGTACGTATGAATTTACAAGCAATCTCTAAATACTTGGCGTTACGTCATGTATTAAAACACACCCATTCATTCCCTTTGGTCTTTTCGGTTGCAGCATGAAATGGATGAACGAGAGAGAATATAGTAAAAAAGGTACACCTTTCGTTTACTTTGCTCTTTCATCGTTTAAAACACTCGACTTTTTCTGTTTTCTGACTTCTTTAGTAATTGCTTCTGCATCCATCGTTGATTAGTAATGGCATGCTGTTGTACTCAACCTGAAAAATAAAGCTTACACAACTATACTCGAAAGGATCACATGTGTTGCATTAGCAGACCACTGGTCCAAAATCTAGCAATACAAAACAATAATTCCACAAGCTGAAAATTTTCTAACCCTTTTAGGATAATACCATTGTGGTGGATGCTTTCCTATAAATCACCATTTCTCTTTACCTCCATGAGAGTCACCTCACACATCTAGACCATCGATGAGAAGGGAATAATAACACGGCATCTCCCCCACTCCCCCAAATATTATCAAGTATACTAGTGTAGCTATAAGTAGTGCTAGATACAAATTTTAGCTATCATTGAAAAACTCAAAATCCATTGAGAAGTTTGGCATCTCTTGGGAAAATGTCCAAAGTGTAAATGACTTTATCAAGTTATGTGTTCACTCTGTGCACTTACTTATGTACCTAACTCCTCAAGGATCAGATTTTGATGGAAGAAATAACACATTTTAATCGAG | |||||||||
gi|308721538|gb|DK558259.1|DK558259 DK558259 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-112M1 CCTTCTCATCGATGGTCTAGA EST sequence (targeted fragment marked with yellow): CACAAGTGTTGCATTAGCAGATCACTGATTCAAAATCAAGCAATATTACGATAATGTCACAAGTTGAAAATCTCTAACCTTTTTAAGAAATACCATTATGGTGAATGCTTCCCACAGTCACCGTATCTCTTTTACCTCAATGAGTGTCACCTCGCACATCTAGACCATCGATGAGAAGGGAATAATAACCCAGCACCTTCCCCCACTCCCCAAGTTATTTACTATGAAGTAATCTAGTGTAGCTAAGTAGTGCAAGATTCAAGTTCTTAGCTATCATGAAATACCTCTAACACTCCAGACAGAGGTTTGACATCTCTTAGGCAAAATGTCTGTCCGAAGTGTGGCATAGTCCAAAAACAAGGAAAATATTATGTATGCAGCATCCAGAAATGTCATGAATGGACTTAATGTATTTTAGTTTATACTTAACTCCTGAATGATCTGATCATGCTGATAGAAATAAAATAGCTTAATCAAGAGATAACAAGTAATATCTGTGACCTAGACCTTTCTAATTGGATGCAGGTTTTAGGATGTTCACCTTATTTCTTAACGTTTTGGTAGCCGGGATAATACAGATATACATAACAAAACAACGTATATCAAGCTGGAAAAGCATCTAAAATATAGTATTGTTTCTAAAAGAGTAGTGTGATATGTTGAACAAGCTATTTTCCTTAATACTCACTACAGATTGAAAGTGGGGTGAACGGTGCAAACAAAAAATCCCTTCTCACAAATGGTCTAGACATGAAAGACAACTCGAGGGAACCTGCGCCAGTCTTCAGTTTAGTCAACCACGGCAGCCCCCAAATCTATAATGTAGCACTGCATAAACAAAGGCATATGAATTTTTAGA | |||||||||