| mature miRNA: CCTTTCACTGTGGACTGCAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73894152|gb|DT496890.1|DT496890 WS01124.BR_N15 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01124_N15 5', mRNA sequence CCTTTCACTGTGGACTGCAC EST sequence (targeted fragment marked with yellow): TTCCACGAATCTTGTCTTCTCTACGATATTCGTGATAAACTTTTTTACCCCTAGAGATTGAGTATGCTAATTGCTAACTATAGTGCCCCTGACCTAGGCTGGCCCCATGAATTGATGAGTCTTCCAAATATGTGATAGGAACAACACATGTTCGAGTATAGTACTTTCTAAAGTGTGGCAACTTTGTCTATTGATTGTGTGTTCAACTATGTAATATTTATCTACCACTTGGATGGCCATGAGACATGTGGACGCAATAATGATGTATCCTAGAGGCCAGAGGAGGGAGAGGACAGATTGTGAGACTTTCCGGAGCCCTGTTGTCTTTGTAGTTATTTGATGGTGGAGGAGAATTTGAAATATTTTACGAGTTTCTCTTACGAGGTGTTGATATCAATATGAACACTCATCTGAAAACAGTGAAATTAACAGTGAAAGGGAAAAATCCAGTAACTTTGGATCATCTCAGTGTGAGGGGAAACAACATTCGTTATTACATCCTTCCTGACAGCTTGAATCTTGAGACTTTGCTGATCGAGGAGACACCTAAGGTCAAACCTAATAAGCCAACAGCTGGGAGGCCTCTGGATCGTGGTAGAGGCCGAGGCCGTGGACGTGGACGCGGCCGCTAATCATGTCTTGCTTGCTTATATTTTTGCAGCGTCTGGTTATGTAGACACCTATGTTGTATCAAGAATCTGCTGGATAAGTTAGGAACAGTTAGAGAATGCTACTGCATTATTTTGCTGTTTGCCTTGTGGAGGCAAATT | |||||||||
gi|73896770|gb|DT499508.1|DT499508 WS0118.BR_I04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_I04 5', mRNA sequence CCTTTCACTGTGGACTGCAC EST sequence (targeted fragment marked with yellow): GATCTCTCTCTCTCTCTCTCACAATCTCTCTCTCTCGGTTTCTCAGAGAGGTCCAAAAATAGAAAGAGATGGGTTTTGTTATAGCTAAAGCACTTGTGCCATTCCTCCTTTCATTGCTATGCTTCACTGTTTTTAGTGAAAAAGCTGAGTCACTGCCAGCTGAGGCACCCCATCACCGGGGCTCCTACCACCACCACCCAACAGCAGCACCAGTGAGTGCGCCACCGAGTCATGCACCTAGCCAAGCACCAACCCCACACCACCACCACCACCATCATGGTCACGCACCAGCTCCTGCACCTGTTCACACTCCAGCACATGCACCAGTGCACCCACCAAAGCCTCACATTCCCCCACCAGTACCCACTCACTTCCCAAGAAAGCTCGTAGCAGTTCAAGGTGTTGTTTACTGCAAATCTTGCAACTATTCTGGGGTTGATACCCTCTTGGGAGCAAAACCAGTTCTTGGTGCTACTGTAAAACTACAGTGCAATAATACCATGAAGCCACAAGACGTGAAGACTACAACCGACAAGAATGGTTACTTCCTCATCAAAGCGCCCGGGACCATCACCAACTATGGAGTTCACAGTGCAAGGTGTGGCTAGTCTCAGCACCAAGTACTGCTTGCAGCAAGATAACTAATCTCCATG | |||||||||
gi|52374778|gb|CV225925.1|CV225925 WS0162.B21_M14 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_M14 3', mRNA sequence CCTTTCACTGTGGACTGCAC EST sequence (targeted fragment marked with yellow): GTCTTGCAACGGCTGGATATGGTACTGCCTGGGGTGTGATTCGTGCACTTCACGGTGAAGGAGTGCTCCAGAGGGCCTATGACACAGAAACTCGTCCGTTCAATCAGGGATCTAGACTCACAGCTTTCGAATTGGTACATGAGAAAATACCTGCCACCCTTATAGCAGACTCTGCTGCAGCTGCATTAATGAAAGACAGTAAAGTGAGTGCTGTTGTTGTTGGAGCAGATCGTGTGGCTGCAAATGGAGACACAGCTAACAAGATTGGAACCTACAGCCTTGCCTTATGTGCAATGCATCATAACATTCCATTTTATGTTGCTGCACCACTTACCTCCTTTGATTCATCCCTTTCTTCTGGAAAAGAGATCATTATAGAGGAAAGATCTCCTAAGGAAATGTTGAACGCACGTGGAGGACTTGGGGAACAAGTTGCTGCATCCGGAATTTCAGTATGGAATCCAGCTTTTGATGTTACCCCTGCCAGCTTGATAAGTGGTATCATAACAGAAAAGGGTGTCATCACAAAGACGGGCATGGATGATTTTGACATAAAGGATTTCATAAATAAGGCTGGATGATTTTGACATAAAGGATTTCATAAATAAGGCTGTCGGCCAGTGCATTGCGTAAGAGGCCAATGTAGTGAACAAGGTTTTGGTTGGTAATTTGAAGAGCTATCTGCCTGCATTGTATTCAAGCTTCTATGATTACAGACCCATCTGATTGTTATAATGGTTGTAATTTCAGTGCAAAAGCACATATTCTATACGGTCTTCTTGGTAATTGGTCGTCACAAGACAATGAAGTAAATGTTTTGGTCATACCAAAACCTGAGAATATCTTGTTCTTGACTCTTTTTTAGGATTTGAGGCATCCCACCTCAAATCCTTACTTCTATCTAATGACGAATTGAAG | |||||||||
gi|24071970|gb|BU880446.1|BU880446 UM49TC03 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CCTTTCACTGTGGACTGCAC EST sequence (targeted fragment marked with yellow): GATGGAGGAAAAGCCCCATATTCAAATCCCAAGAGTGAAACTGGGCAGTCAAGGATTAGAGGTTTCCAGATTGGGTTTTGGATGTGGGGGACTCTCTGGAATTTATAATGCACCTCTCTCCCACGATGATGGATGCTTAATTTTAAAGGAAGTTTATTCTAGGGGTATCACTTTCTTTGACACATCGGATTTATATGGAGATCATCATGACAATGAGTTCATGATTGGAAAGGCTTTAAAGCAGCTTCCTCGAGAAAAGATTCAATTAGCAACGAAATTTGGTATTATAAGGCTCGAAGGGTTCCAGTTCACAGTCAAAGGTACCCCAGAATATGTGCGGCAATGCTGTGAAGCTAGTCTTAAGCGCCTTGGTGTGGTCTACATTGATCTGTATTATCAGCATCGCGTGGACGTTTCAGTTCCAATAGAGGATACTATGGGAGAGCTGAAGAAACTAGTACAAGAAGGAAAGATTAAGTACGTTGGACTATCTGAAGCTAGTGTAGACACGATCAGGAGAGCACATGCTGTCCATCCTATAACAGCCGTGGAAATGGAGTACT | |||||||||