| mature miRNA: CGAAAGACGAGGTTGCCGGCT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|11936327|gb|AW693629.2|AW693629 NF066F06ST1F1000 Developing stem Medicago truncatula cDNA clone NF066F06ST 5', mRNA sequence CGAAAGACGAGGTTGCCGGCT EST sequence (targeted fragment marked with yellow): AATGATTTGAAAAGAGAGTCAAATCAAATCAAAAGAAGTTTTATCTATCTATCTTTCTATCAATCTATCTCATGTTTTGATCTATTCACAGTTGCAAGTGGAAGGAAGAGAGTGATAGAATTCCAAACATAGATCATATATATATATAAGAGAGATGAGATAAAGAAAGCACGTGTACAACACTTCAATTTACATCACAATCTGCAGAGAGTGAAGTAACAAAAAAAATTTGATGGCAACATATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAACCCATCAGGTTACATCAATTACTCCGACGCGCCGCAACCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAATTCAGCCGCCAATACACCCCGGCAACACTTCCCTCCACCACCAACAACAACAGAGTCTATCTCACGCGCCACCACAGTTTGTCGGGGTCCCGCTCTCGGCAGAACAACAATCAGTACATGCCCATCATGACGTTTCCGCTTTTGCATGGCTTCCCACCGC | |||||||||
gi|83666688|gb|DW017096.1|DW017096 EST1226057 MTY Medicago truncatula cDNA clone MTYAP40, mRNA sequence CGAAAGACGAGGTTGCCGGCT EST sequence (targeted fragment marked with yellow): CGGCCGGGTCACTCTCTTACACTAATCTTCTTCTTCACAATCCCCAAATCTTCAAACCCTAATAATCTGCAGCAACAATGTTCCGGAAATTGTGTTCTTCCTTCATCCATAGCCGGCAATCTCTTCTTTCTGCATCCAAAACCACACTTCAATCTCACACTACCTTCTTCCAAGGATATGTTAGAGGATTTTCGAGTGCAAGTTGGGGTTTGAGCGGGAGGAATCAAAGTGAGAATGTGAATGCAAATGCTAGTGCTCGTCCGGATTTTCTGCGGAATCGGGAGAACATTAACTCCAAAAGTGAGAATAATGCTGAGATTGGTGGCAATTCCAGGAAAATGGACTTTGTGAGAGGAGCTATAGAAGATGAAAAGAGTGTTATGGGAGGTTATCTATACAACCAGTATCATTTCCAGCATGATGCTGATTTTGTTCATATAAAGATGCGGCGCAACAATACCTTTGTTACAGTGACCGATTCTAAAGGAAATGTAAAACTTAGTGGCTCTGCTGGTTCCTTGAAAGACATGAAATCAGGGCAAAAACTTTCTAGGTATGCTGCTGAAGCAACTGCAGAAGTGGTTGGAAGAAGATCTAGAGGTTTAGGTTTGAAATCTGTTGTCATGAAAGTGAACGGATTTACTCATTTTCGGAGGAAAAGGCAAGCGATATTGAGCTGGAGGGAGGGGTTTACGGATTCTCGAGGAGATAAAAATCCAATTGTGTATATTGAAGATACAACTCGTCGTCCCCATAATGGCTGCAGACTGCCAAAGAGTCGACGTATCTAGTTATTTTTTGTTTCTCTTGAGCATATTTTCTATATGACTTTCACTTTGTTTCATA | |||||||||
gi|14982920|gb|BI308593.1|BI308593 EST530003 GPOD Medicago truncatula cDNA clone pGPOD-7G2 5' end, mRNA sequence CGAAAGACGAGGTTGCCGGCT EST sequence (targeted fragment marked with yellow): TTTTCATGAACCCATCAGGTTACATCAATTACTCCGACGCGCCGCAACCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAATTCAGCCGCCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACAACAGAGTCTATCTCACGCGCCACCACAGTTTGTCGGGGTCCCGCTCTCGGCAGAACAACAATCAGTACATGCCCATCATGACGTTTCCGCTTTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAAGCCACACGCGCTACTCAGGGACTGTCATTAAGCTTACATGCTCAAGGGTCGGGCGAGGACACGCGTGTTCCCGTTGGTGGGTCGGGTTCCTCTGCTTCGAACGGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAGTTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGATGGAAATGGAAAACGTAGCACTGAGTTATCAACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCATTTGAACAAGTGCAAGAATGGTTCAGCAAGAACCTCACTGG | |||||||||
gi|151387976|gb|EV257847.1|EV257847 MTYDD44TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence CGAAAGACGAGGTTGCCGGCT EST sequence (targeted fragment marked with yellow): GGAAAATGACTATCACTCTCTTACACTAATCTTCTTCTTCACAATCCCCAAATCTTCAAACCCTAATAATCTGCAGCAACAATGTTCCGGAAATTGTGTTCTTCCTTCATCCATAGCCGGCAATCTCTTCTTTCTGCATCCAAAACCACACTTCAACCTCACACTACCTTCTTCCAAGGATATGTTAGAGGATTTTCGAGTGCAAGTTGGGGTTTGAGCGGGAGGAATCAAAGTGAGAATGTGAATGCAAATGCTAGTGCTCGTCCGGATTTTCCGCGGAATCGGGAGAACATTAACTCCAAAAGTGAGAATAATGCTGAGATTGGTGGCAATTCCAGGAAAATGGACTTTGTGAGAGGAGCTATAGAAGATGAAAAGAGTGTTATGGGAGGTTATCTATACAACCAGTATCATTTCCAGCATGATGCTGATTTTGTTCATATAAAGATGCGGCGCAACAACGCCTTTGTTACAGTGACCGATTCTAAAGGAAATGTAAAACTTAGTGGCTCTGCTGGTTCCTTGAAAGACATGAAATCAGGGCAAAAACTTTCTAGGTATGCTGCTGAAGCAACTGCAGAAGTGGTTGGAAGAAGATCTAGAGGTTTAGGTTTGAAATCTGTTGTCATGAAAGTGAACGGATTTACTCATTTTCGGAGGAAAAGGCAAGCGATATTGAGCTGGAGGGAGGGGTTTACGGATTCTCGAGGAGATAAAAATCCAATTTGTGTATATTGAAGATACAACTCGTCGTCCCCATAATGGCTGCAGACTGCCAAAGAGTCGACGTATCTAGTTATTTTTTGTTTCTCTTGAGCATATTTTCTATATGACTTTCACTTTGTTTCATAGCTGTATGTTTACAGTTTGCACATAACCAGAAT | |||||||||