| mature miRNA: CGAACCGAACCGAACCGGACG species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195297451|gb|FG415032.1|FG415032 000603KUBA010623HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01062, mR CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): TTAAAATCTGATTCTTTACGTGTATTTCTTCCAATTCGCGAGCGATCAATTTTAATGATCAGGAAAACAAAAACGTGAAAGGTGATCTTCAATTTTGGAAACCATGTCCCCAGTTGGACTCTACTGTAAAGACGGAAAAACAAAAACATTGTTGGAAAAATTGGTGAAAACACCAATTTTGAGCCAAATTTAAGGAAGGACATACATGTCCTTTTTAGTGGGTCCAAGATACTTTGTGTTCTCCTCCATGAGGAGATAAAGAACAAGCATTTATTTGCTCAAATCCATGGAGGTTTGAATGAAATAATGGCTTCCAAAGTAGATACCATGGTTATGGATTCTGGTGAAACCAAAGGCTAGTCCCACATTGATTTTCTATGGAAAAAGTAATGGGTTTATAAAGCCTAAGTTTAGTCAAGAGTTTGGGTCCCAAGGGGCACCCCACTTTTGTGAAAGGGGAAGGACCTATGTAACCATGGTTTGACCAATTACTCCACCCGCCGCCGTCCGGCTCGGTTCGGTGCGGGTGCGGGTGTAAATAATAAAATTAAAA | |||||||||
gi|195215039|gb|FG446490.1|FG446490 010227KADA025143HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): CTTGTATTTTCGGTAAAATAGTTGTACCGAACCGGGGCAGTATTCGGTTCCCGATTAAACCGGCCGGTTCGGTCCGGTTCCGATAACTATGGGTTCTAGTATAATTGTAGTTCATTATTGCAGGTGGTTGAAATTAGTAAGGGGAGTAAGGTGAAATATGAACTCGACAAGAAAACTGGAATGATCATGGTTGACCGTGTACTTTACTCATCAGTTGTTTACCCCCATAACTATGGCTTCATCCCTCGTACTCTCTGTGAGGACAATGACCCCATGGATGTGTTGGTTATCATGCAGGAGCCAGTTCTTCCAGGATGCTTTCTTCGAGCTAAAGCAATAGGCCTCATGCCTATGAT | |||||||||
gi|195216144|gb|FG417634.1|FG417634 000719KUBA014559HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01455, mR CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): ATAATGGATAACAAAAGAAAAATTAACTGATAAAATCTTGGATAGGAAAATAATGTGAAATGTTTTTGATGAAAACTGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAGTAATCACATGTAGGTGTGAATTAATATTCTAGATAAATATGTATACGCGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCAAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTATCGGGTCTTTATTTTTAAAAAC | |||||||||
gi|195310088|gb|FG446847.1|FG446847 010326KAEA999009HT (KAEA) Actinidia deliciosa dormant buds before hydrogen cyanamide treatme CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): CTGCAATCAACATGATTAGGGAAAGCATTTGTTTCACGGACTTCATTTCTACGGATTTGAAATTCTTTGAACATTCTCCCAAATTTTATTAATCCTTTTTCTCAAAACTTTTTTTCGCTTGTTGTGTTGTGTGTATTTCATATCATGAATTACCTGTGCATTATGTAATTTGTGTGGAAAGTGTATTATAACTAATCGGTAGTTCTAAATTGAAATTTTACCAATGTTTTGAAAAGCAGACCGTTGAGTGAATCAGAAAAGAGACCAGGTAAATGGGTCACCGGTTCAACCATTAGATCAAACAGGAATCGAACCGTGATGTTGTAATTACGTCCTTAATGAATCTAAGTCGGTTTTCGAGTTAAAACGGTTAATTAAGCTTAACCGGTCTGGAAAGTGGGCCTGTTGACGGTCCAATCGGCTGGTCCGGTCCGGTTCGGATTTTAAAACATTGATTTTTACACTTGCTTAACTTCATGGGCATTTTGTTGAACCGGTCCATTTATAGGAGTCATGATGTATAAGAAACCTCATAATCTTTGTTCACGACATGCATTACCATTTGTCCTGTCATATAGTTAACTACAATCCCT | |||||||||
gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT | |||||||||
gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA | |||||||||
gi|195264293|gb|FG470564.1|FG470564 021008KALA012537HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): ACTGGGTACTTTCGCAAACACACACCCCCTCACTTTGCCGCAATGGTTCTTGAGCGTTTCTCTCGGGTTCCTCGGCATGCCTATTGCTGCTGCCATAAAGATGATCCCGGTGGGGTCGACATAAATATCGGGTGAAGCGAAACAGGTACTTGGCTAATTTTTTCTATATGTTCATCAACGATGAAAGAGACTTGCCTTTGCGCCCCGTATTTCTGTAGCAGCACTATGTAGGGTATTTGATAGGATTTCTGATATAGGCTGAAGATCTCCCACGGGTAGACAATCGCTTGTAAAACAAATCTCTTGGTCTTTTCTTTTCTGTGTTTAGGCTAGGGGTGCACAAAAGACCAAAAGAATCGAGAACTGAACCAACCCGACTTTATTGGTTCGGTTTGGTTCGGTTCTACCATGTTCATGGTTCGGTTCTGGGTCTAAAAATTGTATACCTGAACAATTCGGTTCGGTTCGGTTCTCGGGTCTGTAAGATTTTTTTATCCAGAACCGAATAAGGAATCGAAGTCTAGACCTGATCATATAGTAATACAATACGCTCACCATACACTATTATTGCTTATGGTGGCTT | |||||||||
gi|195283389|gb|FG448252.1|FG448252 010513KAFB001357HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): GGAGTCTTTTGGACTCCATGGGTGAATCACTGGTTCCTTGCATTTTTTGGGGCGAAATATAAGGACTTCATTCATTTAATTGAGAGAACATAGCTTCAAATTCCAAGAACAAACAAACCTGNGAAAAAGAGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGAAGCATAGTTAGGGCTATTCACGGGTCGGATCGGGGTTGGGGTCACCCGACATTCGAACCGAACTGGTCGGGTTGGAGAAGTTTGGGCCCAATTCCGAACCAATAGATGGTTGGTCGGGTTGGATCGGTTCAGGTGGAATTTGATCGAGTTGGTGAAAAATGATAGATTTTAGTATAATATTTGTCGGGTTGGTCGGCCGAGTTGGTCGATTGAATGATCCGACACCCGAATCGAATGTGGTCGGGTTAGTTAAAATTCACCCGTTATTCACTCGTAGAGTGAGCGGGTTTGGTTGGGTTCGGTTCGAATCGATCAGGTTAGCGGGTAGATCGGTTATTTGAACCACCCTAATTAAAATGGTTGATTAGAGGTGGTAGGCACCAAAATGGTTGCTATTTATGGGGACTACTACATTTTTTTCAAAAAAATAAAATAAAATAT | |||||||||
gi|195200299|gb|FG414505.1|FG414505 000512KUBA005647HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00564, mR CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): GTTTTTCTCCATACAATTCGATTCACATTTCAAAAAAAATGAACCCATAGCTCACTATTCGGTTCACAATATTTCATCCCGAACTGCGGTTTTTAACCTAATCGAACCAAACCGTTAGCTATCGATTATTCATGATTCAGTTTGGTTCACTAATATTCACGGTTCGGTTCGATTTAGTTCACTAATATTCATGGTTTGGTTCGGTTTGGTTAGGTTCGGTTCACTAATATGTGTTCATTTTGCACACACATTCGATTGTTCACAGTTCGGTTCGGTCCACTAATATTCATAGTTCGGTTCAGTTCAAAAAAGGGCCAAACCGTTGTTCACGGTTCGGNCCATAGCTCGGTCTTAAACCAGACCGAACCCTAGTCACCCCTAGCACACACCCAATGATTGTACTTTGAAATCTCATAAACTAAAATCCTTGTCTACAATCAAATCACAGAAGTTGGTTAAAAGATGAA | |||||||||
gi|195286071|gb|FG452348.1|FG452348 010603KAFB006656HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): GAATTCTGGATAGAAAAAGAATGTAAAATGTTTTTGATGAAAAATGGATAGAGTAATCCTAATATCCATGGGAAGTGAAAATATTTTTGTTGGGAGAAAACTAAAATAATCACGTGTAGGTGTGAATTAATGTTCTAGATAAATATGTATACGCGTGTATATATATATATATATATAATCGATTTCGGTTCGGTTCGGTTCGAACCACGGTTTGAAAATAAAAACCGGTAACCGAACCAAATTTACCAGTTCTTAATTTTTAAAAACCAGAACCTAACCATTAAACCATAGAACCAATCCAAAATGTACGGTTCGGTTCGGTTCACCGGTTTTCGGATTTTTTTGGACACCCCTACGATGCGTGATACCTACAAATTGTAGAAAAGAAAAGCATCACGTGGCCCCCTCGAGAGAAATTTTTGATTTGGCCACTGGTCTGTGCAACGTTAAGCAATACAACTTGCAAAGAAAATGTAATCCATAGAATTCTACATAGGTCTTTAAA | |||||||||
gi|195253920|gb|FG467732.1|FG467732 011204KAKA004142HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment CGAACCGAACCGAACCGGACG EST sequence (targeted fragment marked with yellow): AGAACCTCTAAAGCATGAGTCATATTGTCTCAAATTGCTTTTGCCAAATCAATCTGACTGGGATGTATATCAACTGACTCAGTCCGCTATTTGGCTGTTTTGAGAGCTAGTTACCTAAGCCACCTGAACATCCAACAATTTACATGAATTTATTAAATTTAACTAACAAATAGCCTTTGATGGAGAAAATATGACTCGTATAGGCAACCCCAATCAAATTGGGACACAAGACTAATTTGGTTTGGTTTGGTTTGGTTTGTTGACCTAAGTCAGCCTAAAGCTCATTGCTTTTTAGATCCAAATTGTTGTGACCAACATGACTTCTAAACACTAAAAACTAATGTGTTGGTTTTTTATACATGGTGGCAGTCATTTCTATTGCTCAACTTTGTCTGATGCAGGCTGTTTTTCGTGGCTTCCAAGCCCGGAGGCAGTATCGGAAGATTGTTTGGTCAGTTGGAGTGCTTGAGAAGGCAATCTTGCGCTGGCGGTTGAAGAGAAAAGGCTTTCGCGGGCTTGAGGTTTCCCCCGATGAAGCTGTTGTGATAGATCCGAAGCAAGAAAGTGATGTTGAGGCCTTCTTCCTG | |||||||||