| mature miRNA: CGAACCGAGCCGAACCGAACC species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|89497105|gb|DY652899.1|DY652899 PU4_plate2_A05 PU4 Prunus persica cDNA similar to expressed mRNA unknown, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): CACGGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCGGTTCCGGTTCGGTTCGGTTTTGAACCGGATTATAAAAATTATTTTTTTAAATTACTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAATAGAGATATTTTGACATTGAACTTGGATAAATATTATGTTTTTTTTAGTGAAATTAAAAATATAGCATTAAATATAAATATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCGGTTTTTGAAGACATGGAACCGGATCCGGAACCAGTCCAAACCGGTCCGGTTCGGTTTTTGACCGGTTTTTGACTTTTTGGTCAACTCGGTTTTTTTCCGGTTTGGTTCGGTGCGGTTTGGTTTGGATTTCCGGTTCGCCGGTTTGAGTGCCCACCCCTAGTTCC | |||||||||
gi|89484923|gb|DY640717.1|DY640717 PU2_plate36_N24 PU2 Prunus persica cDNA similar to weakly similar to Histone H2B (SP O22582) CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): CTGTTCTCTCTAATCGAATCGCATCCCTTTCGTTTCCAAAACTCCCAAATTCCCAAACCCTAACTTTTCTCTCACAACTCCCATGGCGCCCAAAGCTGAAAAAAAACCCGCCGAAAAAAAACCAGCGGAAGAAAAAAAGTCCAATGGGGCTGAAAAAGCCCCGGCCGAAAAAAAACCCAAGGGCGGGAAGAAACTCCCCAAGGAAGGCGGAACCCCCCCCCGAAAAAAAAAAAAAAAAAAATTCAAAAAAAACCTAAAAACCTACCAAAACTATATCTTCCAGGGGGTGAAACCAGGTCCCCCCGATAATGGGATTTCCAGCCAGGGCATGGGCATCATGAACAACTTCCTCCACCAACTCCTTTAAAAACCCCCCCAAGAATCCTCCCAGGCTGGCAGGGAACACCAAAAACCCAACAATACCTCCCCGGAAAATCAAAACGGCGTTAAGGCTGGGGCTTCTGGTGAACTTCCCAAACCCCCCGTGGCCGAAGGGAATTAAGGCGGGAACAAATTTACAAATTCCTGGAATGTGGTTGGGTTCGGCTCTGTTCGGAATAGTAAGTTTTCCAAGTTCAGTGTGTTTAATTTAGGGTTTAGTTAATAAGATGTGAAATCTCTTATACTTTCTTTAAACAAATATAATGGGTTATATGAGATGTAATTTCTGCCTCTCACTGGGATTAAACCGGGAAATTTTGGATATCCCAATTTTTAAAATAAAACCCCCGTGGCTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|89477820|gb|DY633614.1|DY633614 PU1_plate18_J02 PU1 Prunus persica cDNA similar to expressed mRNA inferred from Contig117 Pru CGAACCGAGCCG-AACCGAACC EST sequence (targeted fragment marked with yellow): AACCGGTTTCGGTCCGGTTCCGGTTCGGTTCGGTTTTGAACCGGATTATAAAAATTATTTTTTTAAATTACTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAATAGAGATATTTTGACATTGAACTTGGATAAATATTATGTTTTTTTTAGTGAAATTAAAAATATAGCATTATATATAAATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCGGTTTTTGAAGACATGGAACCGGATCCGGAACCGGTCCAAACCGGTCCGGTTCGGTTTTTGACCGGTTTTTGACTTTTTGGTCAACTCGGTTTTTTTCCGGTTTGGTTCGGTGCGGTTTGGTTTGGATTTCCGGTTCGCCGGTTTGAGTGCCCACCCCTACCAGCCACAACGTGCTTAACCACTACAGCAATTAG | |||||||||
gi|89497105|gb|DY652899.1|DY652899 PU4_plate2_A05 PU4 Prunus persica cDNA similar to expressed mRNA unknown, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): CACGGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCGGTTCCGGTTCGGTTCGGTTTTGAACCGGATTATAAAAATTATTTTTTTAAATTACTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAATAGAGATATTTTGACATTGAACTTGGATAAATATTATGTTTTTTTTAGTGAAATTAAAAATATAGCATTAAATATAAATATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCGGTTTTTGAAGACATGGAACCGGATCCGGAACCAGTCCAAACCGGTCCGGTTCGGTTTTTGACCGGTTTTTGACTTTTTGGTCAACTCGGTTTTTTTCCGGTTTGGTTCGGTGCGGTTTGGTTTGGATTTCCGGTTCGCCGGTTTGAGTGCCCACCCCTAGTTCC | |||||||||
gi|115593011|gb|AM287615.1|AM287615 AM287615 Prunus persica fruit skin mature fruit Prunus persica cDNA clone Skin18F10, mRNA se CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): ATGGGAGTTCAACTTCAGCGATTTCGACGTCACGCGTGACCCCCACGCTCCCGACTCCATCGCCCTCCTCCGCAGCCAGGGCATCGACTTCGACCGCAACCGGTCCGAGGGGATCGATTCGGCCCGGTTCGCTGCGCTGCTGATGTCATCGGGGCTCGTCCTGAACGAGTCTGTGAGCTGGGTCACGTTCCATAGCGCGTACGACTTCGGGTACCTAGTCAAGATTTTGACCGGCCAGCAATTGCCAAGTGGCTTGAAAGACTTGGAGGAGTTTTTGAAAATTGTGAGGGTCTTTTTCGGAAATAGAGTTTACGACGTGAAGCACATGATCCGCTTCTGTGATGGCTTGTACGGAGGGTTGGAGCAAGTTGCGAAACGTTTGGAGGTGAACCGGGCGGTCGGGAAGTCCCACCAGGCCGGTTCAGATAGCTTGCTGACGTTGCATACGTTTCAGCAGATTAAGAAAAAGTGTTTTGTTAATTATGATGAGGTGGAGAAGCACGCGGGAAAGTTGTTCGGATTGGCCGTGGTTTAATTTTTTATATTTAGGGTGTAGATAATTTTTTTATTATTTTTATATTAGACAATTTGGTAAATAA | |||||||||
gi|84633227|gb|DW346837.1|DW346837 PP_LEc0011M18f Peach shoot Prunus persica cDNA clone PP_LEc0011M18f, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): GTTTGTGGGGTTTCTATTTCTCCTTCTCTTAATCACCTATTTTTTTGCATATGACATTCTCTTATTTTGTGATGCTGAAGTTTCCTAGATAATGAAATTGAAGCTCCTTTTTAGTCTTTATGAAGTAGCCTCAGGGCACAAATAATTTTGCTAAGTTTGCTCTCTATTTTAGCCCATCCAACCCTGAATCAGTTCAAGCTCAACTTCAAGCTCTTCTTGGGGTACCAATCATTCCTTGCCATGAACGTTATTTGGGTCTTCCTATTAGGGGTGGGCACGGTTCGGTTTGGACCGATTTTTGCCTCAAATTAGAACCGATCCGGTACTATTCATCTGGTTCGGTTCGGTTCGGTTCGATTTTAATAAAAAAAAA | |||||||||
gi|84629674|gb|DW343284.1|DW343284 PP_LEc0014I12f Peach shoot Prunus persica cDNA clone PP_LEc0014I12f, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): TCCCCCGCGGCTGCAGGCTAATATAGTGCAAGCAGACCCACCCAAAGTTCTTATTTAAGCCAATGAGACAACGCCATGTGTCAAAAGCATATATAATTAAATAATGGTCGGTTCGATTCAGGTCCAACGGTTCAAAAAATTTTAGACCCGAAGGCTGAACCGAAGTCAACGGTTCGGTTCAGGTCCAGCGTTGACTTTTTCGGTTTGGTCAAAAAAACCTTATTTTTCAGTTCGGTTTGGTTTGGTTCGGTCGGTTTGATCGGTTTATCGGTTTTTATACCCACCCCTAGTTTTTGTTATTCTTCATTTTTTCTAGTTATTTTCAAGCATGTTAACATCTTCTTTTTTTTGACACGAAGTTGATGGTAGTTTATTAATGATGATGAATGAAACAAATATAAAAATTGGGCTAATTTTTAGGGATTAGGCAAGTACCTCTACACTAATGAGCGTTATCGGTTGTCGGCTATTATGTAGTCTACCCTCTTGTTGAGGCCCAAAAAATCTCAAGGAAGGTTCGTGTATAATTTTAGGCCCAATTCATTACCGTGCTATAAAAGGGACATAGATGCCCATCAAATAAGTTACGAAGTGTCTAAACAAGCTTTGATATTCGCACCATGCCAAATGAGACTAGAATTTGGCATGTGGGGAGGTCATGATACGGGTTTACCAATTTCACATGCAAACGTGTAAAGTTTAACAATGTCACAT | |||||||||
gi|84630557|gb|DW344167.1|DW344167 PP_LEc0018E19f Peach shoot Prunus persica cDNA clone PP_LEc0018E19f, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): ATGTACTCTACATAATGATCATAGTGTCAAAATGTCTAGCAATTGAAGTTTAAGTTGTTTGTGTGCTGATTTCCTTTTGAAATCTATCCTCGCAATTTCCTTTTCTAATTTGTGTTATCAATAAAAACCTTAGAGAGGGCAAAAAGGGAAATGTCATGGTTCTAATTAGGGGTGGGCACAGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCAGTTCCGGTTCCGGTTCGATTTTGAACAGGATTATAAAAATTATTTTTTTAAATTGCTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAAGAGAGATATTTTGACATTGAACTTGGATAAATATTATATTTTTTTTAGTGAAATTAAAAATATAACATTAAATATAAATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCAGTTTTTGAAGACATGGAACCGGATCCAGAACCGGTCCAAACCGGTCCGGTTCAGTTTTTGACCGGTTTTTGACTTTTTTGGGCAACTCGGTTTTTTTCCCGTTTGGTTCGGTGCGGCTTTGGTTCGGATTTCCGGTTCGCCGGTTTGAGTGCCCCCCCCTAGTTCTTAAAAAAGTGGGATCTTTGAGATCCACTTCATTAAAACCGGCGTCTATGACTTGGCTAGAATCCCTTTCTACATCGCCTACGGGGTCATGTGTTATTAAAAACAATTTCAAACATCCCTAGTATATGACTTTTATTTTATTTTATAAATGATAAACTTCAACAGTACAATTAAAAAAATCAACATGAATTCTAAAGTACCAATTTCAAAAGAAAAAAAACTAAAAACAAAAAAAACAAGGGGTTCCCCCCTTTTTTGGGGTTTCTCCCTGAGGGGGGA | |||||||||
gi|84630557|gb|DW344167.1|DW344167 PP_LEc0018E19f Peach shoot Prunus persica cDNA clone PP_LEc0018E19f, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): ATGTACTCTACATAATGATCATAGTGTCAAAATGTCTAGCAATTGAAGTTTAAGTTGTTTGTGTGCTGATTTCCTTTTGAAATCTATCCTCGCAATTTCCTTTTCTAATTTGTGTTATCAATAAAAACCTTAGAGAGGGCAAAAAGGGAAATGTCATGGTTCTAATTAGGGGTGGGCACAGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCAGTTCCGGTTCCGGTTCGATTTTGAACAGGATTATAAAAATTATTTTTTTAAATTGCTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAAGAGAGATATTTTGACATTGAACTTGGATAAATATTATATTTTTTTTAGTGAAATTAAAAATATAACATTAAATATAAATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCAGTTTTTGAAGACATGGAACCGGATCCAGAACCGGTCCAAACCGGTCCGGTTCAGTTTTTGACCGGTTTTTGACTTTTTTGGGCAACTCGGTTTTTTTCCCGTTTGGTTCGGTGCGGCTTTGGTTCGGATTTCCGGTTCGCCGGTTTGAGTGCCCCCCCCTAGTTCTTAAAAAAGTGGGATCTTTGAGATCCACTTCATTAAAACCGGCGTCTATGACTTGGCTAGAATCCCTTTCTACATCGCCTACGGGGTCATGTGTTATTAAAAACAATTTCAAACATCCCTAGTATATGACTTTTATTTTATTTTATAAATGATAAACTTCAACAGTACAATTAAAAAAATCAACATGAATTCTAAAGTACCAATTTCAAAAGAAAAAAAACTAAAAACAAAAAAAACAAGGGGTTCCCCCCTTTTTTGGGGTTTCTCCCTGAGGGGGGA | |||||||||
gi|84630555|gb|DW344165.1|DW344165 PP_LEc0018E17f Peach shoot Prunus persica cDNA clone PP_LEc0018E17f, mRNA sequence CGAACCGAGCCGAACCGAACC EST sequence (targeted fragment marked with yellow): ATGTACTCTACATAATGATCATAGTGTCAAAATGTCTAGCAATTGAAGTTTAAGTTGTTTGTGTGCTGATTTCCTTTTGAAATCTATCCTCGCAATTTCCTTTTCTAATTTGTGTTATCAATAAAAACCTTAGAGAGGGCAAAAAGGGAAATGTCATGGTTCTAATTAGGGGTGGGCACAGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCAGTTCCGGTTCCGGTTCGATTTTGAACAGGATTATAAAAATTATTTTTTTAAATTGCTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAAGAGAGATATTTTGACATTGAACTTGGATAAATATTATATTTTTTTTAGTGAAATTAAAAATATAACATTAAATATAAATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCAGTTTTTGAAGACATGGAACCGGATCCAGAACCGGTCCAAACCGGTCCGGTTCAGTTTTTGACCGGTTTTTGACTTTTTGGTCAACTCGGTTTTTTTCCGGTTTGGTTCGGTGCGGCTTGGTTCGGATTTCCGGTTCGCCGGTTTGAGTGCCCACCCCTAGTTCTAATAAAGTGGATCTTGAGATCCACTTCATTAGAACCGGCGTCTATGACTTGGCTAGAATCGTTTCATACATCGCTAACGGGTCTATGTGTTATTAGAATCAATTCNAACATCGCTAGTATATGACTTTTATTTTATTTTTATAATGATAAACTTTCACAGTACAATAAAAGACATCAACATGACATCTAAAGTACCAATTTTCAGAGAAAAAACAACTACTCATAAAAACCAGGCTGGTCACCCA | |||||||||
gi|89497105|gb|DY652899.1|DY652899 PU4_plate2_A05 PU4 Prunus persica cDNA similar to expressed mRNA unknown, mRNA sequence CGAACCGAGCCG-AACCGAACC EST sequence (targeted fragment marked with yellow): CACGGTTCGGTTTGGACCGGTTTTTGCCTCAAATTAGAACCGATCCAATACTATTCATCCGGTTTGGTTCGGTTCGGTTTTAATAAAAAAAATTTCAAAAACTGTCCGGTTCGGTTTGAACCGGTTTCGGTCCGGTTCCGGTTCGGTTCGGTTTTGAACCGGATTATAAAAATTATTTTTTTAAATTACTTTTTAATACAATTCTCAACTGAAATATTATTTTTTTACTTGAAAATTAACAAATTATTCAATTTCATATAAAAAATAAATATTAAAGTGAGAAAATAGAGATATTTTGACATTGAACTTGGATAAATATTATGTTTTTTTTAGTGAAATTAAAAATATAGCATTAAATATAAATATATATATTGAAATTATATATTTTTTTAGTTTCACCGGTTCGGTTCGGCCCGGTTCGGTTTTTGAAGACATGGAACCGGATCCGGAACCAGTCCAAACCGGTCCGGTTCGGTTTTTGACCGGTTTTTGACTTTTTGGTCAACTCGGTTTTTTTCCGGTTTGGTTCGGTGCGGTTTGGTTTGGATTTCCGGTTCGCCGGTTTGAGTGCCCACCCCTAGTTCC | |||||||||