| mature miRNA: CGAGACAAGTGAGATGAAAGA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188462801|gb|EY750532.1|EY750532 CS00-C5-003-096-C06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se CGAGACAAGTGAGATGAAAGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTGTGTTGCTTCCTTCCCCTTTCACATCTCATTTGTCTTGGGGGGTTTTGTTTATTCAGATCTTTACAATTAAGTCGACAATTTCAAACGAATTTACACGATTGCCACCACCACCGTAAAAATCGTTACTTTCTTAAACGAAAAAAATGGAGTCGAATTTGTGGAGCAATCGCCTCTCAACGGCTTCTTCAAGACGCTACCACCACCAGTCTCGATCTGGTCTGTTTGTTTTGTTTTATATTGAATAAAAATATTGAAAGAAATGTTACCGTACGACACCGTTTGACTCGTTTTGTTGTTGGAATTTTGATTTTTGTACAGATCTGTTCATCGGAGGAGGATACGATGAAACGGACGGCGACGATGATTTGAATGCGATGTTTCTTTGCCCATTTTGTGCTGAAGATTTCGACATTGTTGGACTTTGTTGCCACATCGATGAGGATCATCCGATTGAAGCTAAAAACGGGGTATGCCCTGTTTGTGCGAAGAGAGTTGGAACGGATATTGTTAGCCACATAACCATGGCAGCATGGGAATTTTTTTTAAAATTCAGCGCAAACGGAGATTGCGTAAGGGGTGGACCAAAATTCAAATTTTCTTTATGGAGAAAAGAATTACAAGAAGGAAACCCACAATCTCCTCCTGGGGGGACTTCCAGGCTTGGTTTCTTCCTCCCATAAAAAGGACCAATCCAATGGTGGCTCCCCATTACAATTTCACCAGACCACGGGAGGGTAAACCACCTGAGGCCGGAAACCGCAACGTCGAATAAAAGGGACGAAACCCTGCGAGAAGAAAGCGACGAACGGAAAACCTACCCCACAAAGGCCAAAGGACGCCACACCACCAGCATAGAACAAACGAAGGAGCCACGCAAAACACAAGACCACCGCCCAAAGAGGGAAGATGATGACTCCGCGCCGACCTTGACCCGACCACCA | |||||||||
gi|188313498|gb|EY685515.1|EY685515 CS00-C2-003-020-C10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ CGAGACAAGTGAGATGAAAGA EST sequence (targeted fragment marked with yellow): CAACAATTTTCTCACCTCACTTGTCTCCCAAGCCAACATCATCGCCATTTCCGTTGACTACAGGTTAGCCCCAGAGCACCCTCTACCAATTGCATACGATGACTCATGGGCCGGGCTACAATGGGTTGCGGCCCACTCTAATGGACTCGGGCCCGAACCATGGCTTAACGAACACGCCGATCTTGGGCGGGTTTTTCTGGGGGGAGATAGTGCCGGAGCCAACATAGCACACTACGTGGCAGTCCAAGCTGGCGCTACTAAATTAGCTAGCATCAAAATTGATGGGCTGCTTATTGTGCACCCATTCTTTGGAGTTAAAGAGCCGCATGAATTGTACAAGTACATGTGTCCGGGTAGTTCCGGATCCGATGATGACCCGAAATTGAATCCCGCAGTGGATCCGAATTTGAAGAATATGGCTGGGGATAGGGTGCTGGTTTGCGTGGCAGAGAAAGATGGGCTGAGAAATAGAGGCGTGGCGTATTACGAGACTTTGGCCAAAAGTGAATGGGGCGGTAACGTGGAATTTTATGAGACTTCAGGTGAAGATCATTGCTTTCACATGTTTACTCCAGACAGTGAGAAAGTTGGGCCGTTCCATTGAGAAAATGGTTCATTTTTTCAATAACGCATAAAGTAATGAATTGGTACTCGATAGTTGTACCTCTTGTTTTGGTGCCAAGATATCTCAGCCGTCGCCAGAAGAAGATTGAAAAACCTTTTTAACAAATATAAATAATATGGATCCCATAGCAACCACAAACAGATATAATAATGGACGCCAAAAATTGGACAAAAAATAAGCGTACCGTCGAAAATGCTTATTTGAGG | |||||||||
gi|188268514|gb|EY737508.1|EY737508 CS00-C3-705-031-H02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD CGAGACAAGTGAGATGAAAGA EST sequence (targeted fragment marked with yellow): TNTTTNNNTTTTTTTTTTTTTTTTTCGNCGGCAAACCCGGTACCCTTAGAGNGTACNGGNTCCGGAATCCCTGGGNTCGACCACGCGTTCCGAGAAAAACGTGCGCAACTGAAGAAGCTCAGAATAACGACGACAGAAGTTTTGAATTTTGATGGGCGTTGTCAAAAGAGCTCCTAAATAATCAAATCTCCCTGGTGAGCAGATAATTTTAACAGTGGGTTTGATTTGATAGTCGAACGTTGAAGATGGTGTTGGTCTTAGCGTTGGGCGATTTACACATACCACATAGAGCAGCTGATTTGCCTGCCAAGTTTAAGTCCATGCTTGTTCCTGGCAAGATCCAACACATCGTTTGCACCGGCAATCTCTGCATCAAAGAAGTTCATGACTACCTAAAGATTATTTGTCCTGACTTGCATATTATTCGTGGTGAATATGATGAAGAGACACGATATCCTGAGACCAAAACGCTAACTATTGGTCAATTCATACTAGGACTGTGCCATGGTCATCAGGTTATTCCCGTGGCGGGACCTACACTCCCTATCCATGTGACAGAGGCGCCCGGATGTACACATACTTGTCGACTGCTCGCACTCCTCACCTTACTGGTGATACACCGGACGGAGGTGGTGTCGTTACGCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCTCCCTCCCTCGCCCCTCTACGTCCTCTTGCGTGCGCCTAGCCTCCTGGGGCTCTGGTCGTTGGTTGTTCCCGCTTTCTCCCCGCCCTTCTCCGTGGGCCTCTTTTGTTTCACTTTTCTCTCCCTTCTCCCTCTGCCCCCCTCCTCCCCCCTCTTTTTTTTGGTATTTTTTTTTTCCATCTTTCCCCTCTCTTCTCAGCCCCCCCCCCCACCCCCCCGCCCGCCCCCCCCCCCCCCCTTTCCCTTCCCCCCCCCTCCCCTC | |||||||||
gi|188230388|gb|EY660372.1|EY660372 CS00-C1-101-021-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) CGAGACAAGTGAGATGAAAGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATTACACAATCAAAGCAACTAAAAGCTTAAAAAAGAGGTCCTCTTTTCTTTCTAATCACACACTCGAATTTAGTGATGGTTTCAAGCGAGAGTGAAATTGCCCATGATTTCCCACCCTACTTCAAGGTTTACAAAGACGGGCGTGTAGAGAGGTACAGGGCCTTCCCATGTGTTGACGCGGGCCTTGACTCAACCACCGGCGTCCAATCCAAAGATGTAATGATCTCACCGGAAACCGGCGTCAAGGCCCGTATTTTTCTGCCCAAGATCAACGGCCCAGATCAAAAGCTCCCCCTTCTAGTTCACTACCATGGTGGAGCATTTTGCTTGGGATCAGCCTTTGGCGTTATGTTCAACAATTTTCTCACCTCACTTGTCTCCCAAGCCAACATCATCGCCATTTCCGTTGACTACAGGTTAGCCCCAGAGCACCCTCTACCAATTGCATACGATGACTCATGGGCCGGGCTACAATGGGTTGCGGCCCACTCTAATGGACTCGGGCCCGAACCATGGCTTAACGAACACGCCGATCTTGGGCGGGTTTTTCTGGGGGGAGATAGTGCCGGAGCCAACATAGCACACTACGTGGCAGTCCAAGCTGGCGCTACTAAATTAGCTAGCATCAAAATTGATGGGCTGCTTATTGTGCACCCATTCTTTGGAGTAAAGAGCCGCATGAATTGTACNAGTACATGTGTCCGGGTAGTTCCGGATCCGATGATGACCCGAAATTGAATCCCGCAGTGGATCCGAATTTGAAGATATGGGCTGGGGATAAGGTGCTGGTTTGCGTGGCAAAAAAGATGGGCTGAGAATAGAGGCGTGGCGTATTCGAGACTTTGGNCAAAGTGATGGGGCGGTACGTGAATTTATGAG | |||||||||
gi|188295729|gb|EY744877.1|EY744877 CS00-C5-003-005-E07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se CGAGACAAGTGAGATGAAAGA EST sequence (targeted fragment marked with yellow): GGAAGGAGAGTTTTGTGTTGTGTTGTGTTGCTTCCTTGGCCTTTCACATCTCATTTGTCTTGGGGGGTTTTGTTTATTAAGATCTTTACAATTAAGTCGACAATTTCAAACGAATTTACACGATTGCCACCACCACCGTAAAAATCGTTACTTTCTTAAACGAAAAAAATGGAGTCGAATTTGTGGAGCAATCGCCTCTCAACGGCTTCTTCAAGACGCTACCACCACCAGTCTCGATCTGATCTGTTCATCGGAGGAGGATACGATGAAACGGACGGCGACGATGATTTGAATGCGATGTTTCTTTGCCCATTTTGTGCTGAAGATTTCGACATTGTTGGACTTTGTTGCCACATCGATGAGGATCATCCGATTGAAGCTAAAAACGGGGTATGCCCTGTTTGTGCGAAGAGAGTTGGAACGGATATTGTTAGCCACATAACCATGCAGCATGGGAATTTTTTTAAAATTCAACGCAAACGGAGATTGCGTAGGGGTGGACCAAATTCAACATTTTCTTTACTGAGAAAAAAATTACGAGATGGAAACCTACCATCTCTTTCTTGGGGAATCTTCATGCTTTGTTTCTTCTCCCATACAGAAGCTGATCCATTGTTGTCCTCATTTATATTTTACACGCCTAAGGGTTATGAACCTCTTAGGGTGCCACCCCTTTTGAATTACTTGAACCACCCCTTGGGGGAGGGAAACTTCAATGAAAAACCTTCCCCAAAGGGGATTGTTGCAACGCCCCCCGCCTATTCAAAAAAGGGAAAAAAGAAAAAAAGGGCTCCCCCAAAAAGGGATTTTGTTTCAGCGGGTTTGGGCACGTGGCAAAATTTTTCTTGGGGGAGCATTTTTATAAAAGCCACACGCGGGAAGGGGGGAGGGGGAAGCGACTGTTATTTACACCAAAATATATGAAAAACAAACAGAAAGCGGTGCCACATATTTCCCAAAAAAAAAGGAGT | |||||||||