| mature miRNA: CGAGATGAAGATTTGAATGAT species: Helianthus exilis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|113311141|gb|EE656550.1|EE656550 CHES6105.b1_B16.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHES6105, mRN CGAGATGAAGATTTGAATGAT EST sequence (targeted fragment marked with yellow): GGGGGGTAGCAACTAAAGACCTGAGAGAATAATCGTCGACTGCGTACGTTTCTCAAAACCCCTTTAATCGAACTCCAAAGCTTGAAAGACAATGGGAAAGGACGCAAAGGGCGGTGGAAAAGGCAAAGGAAAACAGGCAGGTGGGAGTGAGGATGGTGGTGGTGCAAAAGGCAAAGGCAAAGGTGGAAAGGCTGCCGATGGCCTTGGCACTTGTACATACGTAAAAGCAAGGCATATCTTGTGTGAAAAGCAAGGTAAAATCAATGAAGCGTACAAGAAGCTACAAGACGGGTGGCTTAGCAATGGAGATAAGGTCCCTCCAGCTGAATTTGCAAAGATAGCGGCCGAATACTCAGAATGCCCATCAGGAAAGAAAGGTGGAGACCTTGGATGGTTTCCGCGAGGAAAGATGGCTGGACCATTTCAAGAGGTTGCTTTTAACACGGTTGTTGGAGCTACCAGTCCACCTTTTAAATCAACACATGGGTATCACATTATCCTGGCCGAAGGACGGAAGAATTAGATCACAAGCAGCATAATGTTATTGTTGTGGTCATGAAATAAAGCTGACTTACAGTATTTTGTTTCTTGAACATATGAAACATTCATGTCTTTATTTCGTCGTGAAAGTGTCCTTTGTTGCTTTTATTTTCTATCATAATGGGAGAACACTACCAATGACTTCCTCGTGTATCANAATGGGTCAAAAATCAACATGGGTCGATGTTTATTTATTAAACTTGTAAACAAAAAA | |||||||||
gi|113311096|gb|EE656505.1|EE656505 CHES6069.b1_J06.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHES6069, mRN CGAGATGAAGATTTGAATGAT EST sequence (targeted fragment marked with yellow): TCTAGGGTAAAGAAAGGCCTATGCTTTCCGTTCGTCGTCTTCTTCCTCTCTACGTGCCTTTCCGACACTATTTTTCTCTTAAAAAAATATCTATGAGTAATAATGGAGGTTTTGGCCCTAGTGGTTTTGTAGCACCTGATGTTTCAACTCTCAGGACATTCTGTACCAGCAAAGATTTGTCAGCTGAGAAATGTGTCCCATGCAACCGAAAGGGTTTGAGCCCTATGACCGAAGATAGTGCCAATGCGTTGAAACCCCAGGTCCCTGAATGGGAGTTGTTAAGCGATGGTGGCGTAATGAAGCTACGTCGAAAGTGGAAAGTTAAGAATTTTCTGTTAGGGTTGGAGTTTTTTAAGATCGTTGCTGACTTGGCTGAATCTGAAGGCCATCATCCAGATCTTCATCTTGTTGGATGGAACAACGTGACAATCGAGATATGGACACATGCTTGCGGTGGGCTCACGCAAAATGATTTCATACTAGCTGCGAAGATCGACAAGCTACCAGTTGAATCTTATCTTAAATGATATGCTGTTAGCCTGTTAGGTGGTTATTTACATTTTCTGTTTCTGTTTTATTGATCATTAGTTGGTACCCTGGAGTATATGGTCTGGGGTTGTCATGTTTCACCGCGTTATTTTTAATTTTATAAAAATTTAGTCGAATTTCAAAAA | |||||||||
gi|113226288|gb|EE629987.1|EE629987 CHEL1366.b1_K06.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHEL1366, mRN CGAGATGAAGATTTGAATGAT EST sequence (targeted fragment marked with yellow): CTCATCTCTCTCTCTCTCTCAAACATACATTCTCTCTCTCTCATGGCCGCTTGTCGCCGGAAACCTCCAAAATAATAACAACACATACATTTCTCAGTTCTTATTTCCCACTTCTCATTTCCCACAATGTCTCCGTTCACAGCAATATTTCTCTTTTCCATTTTTACCCTTCACCACCACCGAGTCACATCCGATCTGACTCAGGAAAAGCAAGCGCTTCAAATCTTCATCTCGAAGCTTCCACACGACTCTCGCTACTCATGGAACCCATCGGACTCCGTTTGCAACTGGCGCGGCGTCACCTGCGACGCCACAAACTCCTCCGTCATCTACCTCCGTCTCCCCGGCGCCAGACTCGTCGGAGAAATCCCGCCGAATACAATCGGAACGCTGACGAAACTCCGTGTACTCTCTCTCAGATCCAATGGACTCTCCGGTAACATTCCTGATGATTTGGCGAATCTCGGTAATATTCGGAGTGTTTATTTGCAGAATAATAAGTTTTCCGGTGAGTTTCCGGCGAGTGTGACGAACATGAGTGGTGTAGAGCGGTTAGATCTTTCAGGTAATGAGTTTTCCGGTCAGATTCCGTTTTCTGTTAACAATTTGAAACGGTTAAATGAACTTAGGTTAGAGAACAACAGTTTTTCCGGTCAGCTTCCGAGTATAAACCTAGCGAGTTTATCCGATTTAAACCTAGCGAATAATAAACTCAACGGTTCGATTCCGAAATCGTTAGCTAGATTTCCGGAATCTGCATTCTCCGGT | |||||||||
gi|113304829|gb|EE650239.1|EE650239 CHES10080.b1_O23.ab1 CHE(LMS) serpentine sunflower Helianthus exilis cDNA clone CHES10080, m CGAGATGAAGATTTGAATGAT EST sequence (targeted fragment marked with yellow): CGGGGTTTGGGCAGGCATATACATATCCGGTGGTCTAGGGTAAAGAAAGGCCTATGCTTTCCGTTCGTCGTCTTCTTCCTCTCTACGTGCCTTTCCGACACTATATTTCTCTTAAAAAAATATCTATGAGTAATAATGGAGGTTTTGGCCCTAGTGGTTTTGTAGCACCACATGGATCAACTCTCAGGACATTCTGTACCAGCAAAGATTTGTCAGCTGAGAAATGTGTCCCATGCAACCGAAAGGGTTTGAGCCCTATGACCGAAGATAGTGCCAATGCGTTGAAACTCCAGGTCCCTGAATGGGAGTTGTTAAGCGATGGTGGCGTAATGAAGCTACGTCGAAAGTGGAAAGTTAAGAATTTTCTCTTAGGGTTGGAGTTTTTTAAGATAGTTGCTGACTTGGCTGAATCTGAAGGCCATCATCCAGATCTTCATCTTGTTGGATGGAACAATGTGACAATCGAGATATGGACACATGCTTGCGATGGGCTCACGCAAAATGATTTCATACTAGCTGCGAAGATCGACAAGCTACCCGTTGAATCTTATCTTAAATGAGTTTACTATAAGTTACCTGGATTTTACAATATGCTGTTAGCCTGTTAGGTGGTTATTTACATTTTCTGTTTTATTGATCATTAGTTGGTACCCGGGAGTATGTTGATCTTTATGGTCTGGGGTTGTCATGTTTCACCGCGTTATTTTTAATTTTATAAAATTTAGTCGAATTTCANAGC | |||||||||