| mature miRNA: CGAGGTGGAGTACGATACGGA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34512620|gb|CF483751.1|CF483751 POL1_24_A10.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_24_A10_A002 5', mRNA sequence CGAGGTGGAGTACGATACGGA EST sequence (targeted fragment marked with yellow): GAGTGCTCCTTCGAACGACCTGCTTGTCGTGGGGTTACCCGTGTCCAAGGACGACGGCCTCGACGCCGCTGCCTATGTCATTGAGGACCTCGCTGCCAGGCTGCCTGATGTAGGCACCGCCGCCAGGGTCGAGCTACATCTGTATGTTACTCCACCTGGTGTAGGCCATCAAACACTATTCTTCTCCGTCTCCACATCCCCTTCCTCCAGTCCAGGTCACCGGCCCGCCGCCAATCGAGTCGACACCGCCCTCATCACGACGACGCATATCCCTAGCACAGTACGCCGTACGCGGACGACCTCTGCTGGTTCAGTTGAGAACAGCTGGTGCTGCAGGACCTCCTCGGCTGTGGTGCGTGATCTCCTTGGGCCAGCAGCAGTTGTGTACGCGGACGTCCGTGTCTGCAAAACAAATCAACCATCAGATTTATGACGTATATGACCCGATGGAGTATATATACATGAAGTATATGATCATACCAGGAGGCGACGGGGACTGGCCAGAGCTCGATGACGATGAGGACTCCGTGGACTGGCGGCGGCGCCATCTCTCGCCTCGGTGCTCGCCTCCGCCTCCACGACAACCCTTGCCTTTGCGCCCTCTCCACCCGACGCGGCAAGCGCTCCTCCCCCACTGTGCCCCCTGACTCCGATGACGAGGGACCCATGCGCGGCCTCTTTGTGCTATCCCGTGACCCCGAGTGCCCGCCGTGGCTGCATCAACCTG | |||||||||
gi|34446649|gb|CF433948.1|CF433948 NIT1_31_E05.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_31_E05_A002 CGAGGTGGAGTACGATACGGA EST sequence (targeted fragment marked with yellow): GAAAAACATCAGTTACACAACACCTTGAACATACAGGTCACGAATCCATGGCACACGGAGATGATCAGATTACAGAGGGCGAGCGAGCGTGCAAGCTCTGGATGGAGGATTGGAGGTGGGTGAGCAGAGCATAGGCTGGCTGGCGTCTAGTAGAGTGAGTCGACTGTCTTGTTGAGCTCCTCCAGCTTCTTCATCCGCATCCTCTCGCTCTCGCTCACAAGCTCGATTAGCCTGTTCACTAGCAGCGCTTTCTCCTTGCTCTTCTCGTTGTACGCCTCCAGGACCTCCTTGTACTCCTTCTCCTTCTTGACGCAGCTCTTGCTGAGAGGCTTGAGCTGACGGTTCACCGTGTCAATCCGCTTCCGTATCGACTCCACCTCCTTCCGTGTAGGATCCGCCATCCCTTCCAGCTCCTGCCTGATGAAGGCGAGTCGCTTGGACTCCTCCTCGACGCGTCCGAGGTGCGCGAACACCTTCTCCCGGACCTCCATCTTGCGCCTCTCGATCTGCTCCTCCTTGGCCTTGAACACCGAGAGCGCCGACCTGGAGGAGCCCTCGCCTTCGTCGTCGTCGCCCGCGCTGCTGCCCAGCGACGACGGGTGCTTCACCCGCAGCACCATCTGCATCGGCTGCTCCACGCCGCCGCCGCCCTGCATATCTGGCCCCCTCCTATTGATAACAATCCTTATTTTGGTGAACACTCTTGTGACACTCTGCATGCTAATTGT | |||||||||
gi|12693251|gb|BG159587.1|BG159587 OV2_6_D10.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence CGAGGTGGAGTACGATACGGA EST sequence (targeted fragment marked with yellow): GCACGAGGCATCACAGCACGCACGTACGGACGGACGGGCACTGCACGCGGGCGTCGCGTCGCGGTCCGCCGGACACGATCCCCGGCAAGGCAATAATGAGGGCGCCCCCCGGCCGACGCGGCCTGGTCGCCGCCGGCGCCTGCGCGCTGCTGCTGGCGGCGTTCCTCCTCCTCGGCAGCCTGCTGGTGACGACGCCGCTGGCGCCGTACCTGCTGCCGCCGCTGGCGCTGTCGCTGCCGTGCCTGCCCAAGGTCACCGCGCCGTCGGGGTCCGGGTACGGCGCGGCGCCCGGCGTCGCGGAGCTGGCGGAGGCCGCCGTGACGTACGCCACCTCGGAGACCGTGCCGCAGCAGTCGCCCGAGGAGATCTCGCTGTCGCTGGCCGTGCTCCGGCGACGCGCGCCGCTGCGGCTGCTGGTGTTCGGCCTGGGCCACGACTCCAGGCTGTGGCAC | |||||||||