| mature miRNA: CGCATTTTCTCAGCAGCCAAA species: Prunus persica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|84629652|gb|DW343262.1|DW343262 PP_LEc0014G19f Peach shoot Prunus persica cDNA clone PP_LEc0014G19f, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): TCCCCCCGGGCTGCAGGCAAAAATTCGCTGCAAAATCCAATCGGAGAGCCCAGACGACGCCACGTGGCTGCTAGCGTTGGTGGGACTGTAGCGCGCGGGTTTGAATTTTTTTGAATGTTGGTAAAAAAATTTCGACTGCACAAGCTGACGTCATCCCAAAACTCGGGCTCGCGCTCGGACAAGCCTCCCCCTCGGGCCAGCCCAATCTCGTGGCCCCCACCTACTGCCCGGGCCAGAATTTGTTGCTGGAAACACTTTTTGGACCCTAACCACCACACCCGCCCACCAACCCCACCCACAAGGGTTGCGGCCAATTCATACATTTATTTTGCACCTTATTTTCTCATTAAATCGAAACCTTGCAATATTTTGGTTGATGAGAAAGTGTCAGAAACCCGCATTTAAAAATATAAACAGAGTCGGACACAATGAAAAAATTTAAGTCTTCCCATCTTAGAAATGCAAAACGCACCAAGAACTAATGTTTCAATAGCCATCTATTGCAGTAAAAATGCATTTCGCCATACTTACAAAAACATATGGTTGGATTCTAAAAGGAAAAATGTAACATCTACAATCAGCTCAAGACCAAATGCTCAAAACTTTAGAAACTAATCTCACTTTGCCTCTCTGCAGGAGCAACGGATTGCCACAAAGAACGGAATGTCTCAATATTCGCAACATCAACACCAAGGGCTGCGAGATTACGGCCATACTCCTGACAATAATATATGATAACATTAATCCTATTGCATCAAATCAATAAATTGGCTACCCAGTTGCTTGAGATCCCCCACCTCACCCGCATATATTAAAATAATTTTACATCCTAGGGGAAAAAA | |||||||||
gi|209172303|gb|FC865842.1|FC865842 PPN080E05-T7 PPN Prunus persica cDNA clone PPN080E05, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): GACGTAAAGCGTTATACATAGAGCAGCTCTAATTTTCCTATGAAACTAAACAAACAATGCAATCCTTGGTCAATCTGTCTAACCTTCTGATCAAACCCAGAAACCATGCCTCTTGTTGGTTTGTCCAAAATTTCAATTCATGGGTTAAAGCTATACGAAATGCTCCTTCCCCCCATGAAGCTTTGGGTATCTATTGTCAAATGCAACGTCAATCTGCTCGTTTCGATAGCTTCTCCATGCTCCTTACGCTGAAATCATGCACCCAATTGAAGAACGATGCAGTCATTCAACATCTCCATGCCCACATCCTTAAACTTGGCTTTAGATCTGATCTATATGTGGCCAGTGCACTACTCGCTGCGCGCTCTATTGCCTCGCTTGAAGATGCCTGTGTACTGTTCGATGAAATGCCTGACAAGAACACGGTCACCTGGAATATAATGATTTCTGGGTATTTGAGATCTGGGGATGTAAAGAGAGCGCGTTTGGTTTTTGAGGAAATGCCATTGAGAGATATTGCTTCATTTTCTGCCATGATCAGTGGGTACGTGCAAAATGGCAATCATAAGCATGCCTTATTGCTCTTTCGGAGTATGGTAATGAATGAGAACGAAGGTATAAGACCTGACGGAGGGATTGCAGTCTCAGTTTTATCCTCTTGTGCCCGCATGGGTACCCATGGGCTGTTGTTGGGGAAATCAGTTCATGGGTTTA | |||||||||
gi|89488928|gb|DY644722.1|DY644722 PU3_plate43_C14 PU3 Prunus persica cDNA similar to weakly similar to leucine-rich repeat_fiel CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): TGTATTTCTCCTGCCTTCTCCACAAACTCTGAAGGAAATGCTTTGCATGCTTTGAGAAGCAGACTCAATGATGCCACCAATGTCCTGCAGAGCTGGGACCCAACTCTGGTCAATCCCTGCACTTGGTTCCACGTTACCTGTGATTCTAATAACCATGTGATCCGTTTGGATTTGGGCAACTCTAACATTTCGGGGAGTTTGGGGCCTGAGCTTGGGGAGCTGAAGCACCTACAGTACTTGGAGCTTTATAGAAATGACATAAGTGGCAAAATCCCAAACGAGTTGGGGAAATTGAAAAGCCTTGTTAGCATGGATTTGTATGACAACAGATTTGAAGGAAAAATCCCCAAATCTTTCTCCAAATTGAAGTCACTCAGATTTCTGCGACTAAACAACAACAAACTAACAGGATCTATTCCAAGGGAGCTCGTCAGCCTTTCTAGCCTGAAAGTTTTTGATGTTTCCAACAATGATCTATGCGGAACAATTCCAGTTGATGGCCCATTCGGGACTTTCTCAATGGAAAGTTTTGAAACAACAGACTTAATGGCCCAGAGCTGAAGGACTGGTACCTACGACTTCGGTTGCTGAGAAGATGCTGGATTCGTCGATCTCTTTAAAGATATACTTGTATTATAAGACAGATTGACTACTATATATAGCTCTGCATGCAATGTATGATGATTGAGTACCTTCTACAAATAATTCGATCGACTCTAGACGCATGTTAAAAAAAAA | |||||||||
gi|84633900|gb|DW347510.1|DW347510 PP_LEc0021M12f Peach shoot Prunus persica cDNA clone PP_LEc0021M12f, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): CAAACAAAGTTAAAAATATCCACAAAGGGGTAACAGTCTCCAATAACAATAACTGCATCTTAATTTCCCTCCCTAACAAATATTGTAGGCATCAATTTTATACTTTCTTAAAACTAAGTTCTTAACTTGTGTCACTCATGAAATCATTTCGGATAATATGCTTTCACACTTGTTTTTTCTCTTTTTTTCTTTTTGAATATAAAAAATCCAAATTCATTTCAGATAAGATCATACAGATTTTGACACCACTAAAAATATCATTTTACAGAAAGTAAAACAATGCAATACGGTACGCTCTTTCATATTTCTCTTTTTGTAAAAGACTAATACAACCTTTTGTTTTTGTTTTTATACAAGCGAAGCGATATTAGGAAAAGAGAAATCGAATCACGTAGAGGCGATAAAGTAGCTAATGAAAAATAACTGGGCCTAATATTGGGCTGAAGACAAAGAAAATGGGCCCAGTACTGGGCTAAGGAAAATAAAGTGGGCCTAGTCCTGGACTTGAAAGATCATTATGATCATCTATCAGTCCCACGGGAGCCCTGGTTAATTAAGTGCGCGAAACAGAAGCACACAGCCATGGCGGGAAGTGACCCACGGAAGCACCTCTTCAACTTAATTCACGATTTCGCCTCCGAGAAGTCGCACGGAGGTACAGTCCCTACACACCTTTTACTATTTTGCATTCACTTATCTGTTTGGTTCCCGAGAGAATGTGGATGAAAGGGAAAAAGAAAAAAAAA | |||||||||
gi|89490626|gb|DY646420.1|DY646420 PU3_plate2_N16 PU3 Prunus persica cDNA similar to hypothetical protein, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): CAAGAACTTCTGATCGTCTCTCTCCTTCTGTTCACCGTTACTCTCGTCGTCGCCTCCCGAACTCCTTTTCTTTTTCTTCAATTATCCGTGAATTTTTACAATCTTATCCCTTGAACTCCGTTTGGCTGCTGAGAAACTGCTGGAGAGAAAAATTTGAAGAGTTTTTCCAAGTCAAATTAACCTCAAATCGAAACCTTCACCTCGTCTCTCACTTTCCGTTGTTTCTCCGTATTGAAATGAAACGGCGAATTGAGTGCCTAGCAGCAATGCTCTAGCAAATGTAAATCGGTTTTCGTTTTGGCAATGGACGTCAAGGCTTTAGCGAAATCAAATAGGGCTCACGCTCAGCGCCATAGTAAAAAGCATCATCCAAATCAGAAAGCAAAAGCTCCGGCGGTAGATGGCGGGAAGGCAAGCGACGCCGGACCTGCAAAGAAGCCATTGGGCAAGCAAGTTAAGGAGAAAACAAATCCTACACATGGTGCCTCTGCACTCCCCACGAATTGGGATCGTTACGAGGAAGAATTCGAAGCAGGTTCCGAAGAGCCAGCAAGTGATGGGCTGAATAGAGCCCCTGAAGTTGCTGTGCCAATGAGTAAAGGGCAGACTATCTCATTCGATTGCGAGGCTAAGCTCGTCTGAGCTACCTTTATTCGAACCTTTCTTCCTTGG | |||||||||
gi|84631628|gb|DW345238.1|DW345238 PP_LEc0022D04f Peach shoot Prunus persica cDNA clone PP_LEc0022D04f, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): GCATCAGAGATTCAGAGAGAGAAGAGGGAGGAGGCTGGGATGGCAACGACGTCGTCTCATCCGAAAGAGGAAGTGAAGAAGAAGAAGAAGAAGGAGGGATTGGGATGGATAGAGTGGGCAAGGGGTTGGTTGTATCTGGTGTACGAGATGCTGTTCCAGAGAATCACGGCCAGCCACTTGCAAAACCCCATGCCTTTGCCTCCTGTCAACGATCTCACTTGCATTGTCACTGGATCCACCAGCGGTATCGGCCGCGAAATTGCCAGGTCAGCGTCTCCTTTCTTCAAATCTACAAAGATTGATGAGTTCATTTCATATTTTTTTGTAGTTTCCTTGTTTGTTTTAGTAATAACTTAACTCACTATGCAAAGAAAGGGATGGGTGTCCTTCTGTTTGGTTGCTGAGAAAATGATACAAAAGAAATTTGGTCCAAATTTCAGTTTTGAATTTTGAATTAGACCGAGTGCCTGAACATGAAAACTGAAAAGGATGTGTGGTCTGGTGGTGGTTATTATGTACTGAACAGGCAGTTGGCGGAAGCTGGGGCGCATGTTGTGATGGCAGTGAGGAACACGAAGGCAGCTAATGAGTTGATCCAGAAGTGGCAGAATGAATGGACTGGAATGGGCCTTCCTCCCAATATTGAGGTCTGCCTCAACTCCGTGTTGCAACACCACCAAATCAATAATTTTTTTTTTTTGATGAACTGCGGGGTGGTAAAACCCCAGAAAAACAAACCCACTAAATCAAATTTATAACATTTATTAACGTAGAATAAGATTGTGACTTTTTTAGGTAATGGAACTTGATTTGCTCTCCTTGGATTTCTGTGTGAGATTTGCTGAAGCGTGGAATGCACGCTTAGGACCTCTTCATGTTCTTAATCACAATGCTGGGATATTTTCAATTGGA | |||||||||
gi|84569427|gb|DW341046.1|DW341046 PP_LEc0001E14f Peach shoot Prunus persica cDNA clone PP_LEc0001E14f, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): TCCCCCGCGGCTGCAGGACTTAAAATGTTTATAAAAGTTTCAATTACAAATACTTACTTGAGCAAAATAAATATGAAATTAACTAGACTGGATTGGATTCTCACAAACAAATCCGTCCTCTAATCTAATCATGTTGGTTTTTAAAATTAACAATCCAATCTAATCTGCCAAATCATCAAAATCGATTAAAATTGAATTGGATCGGCCATTTTGAGCAAATTGAATTCGAATGTTGCACACCCTTCCCAAAAAAAAAAAAGAAAAAAAAAGAAAAGAAAAGCGAATACAAAAAGGCTCCCGCTCCTCCTACAATCCGAATGAAGAAATCGAGAAAAAGGCCCAAAACCCATAAAATCCAACATTTAGGAGGGTCCACCGCTTTATCCGGTTACCAAACCTCATTCCCTCTCACCTACTCTGCTTCACCGTCTACCCCCTCAGCCAGTCACCTCTACTCCCAACCCACCCCGAAAATTTCAACCCCCGACTCCTCCATGCCATCACATATATTCAACCCAAACTCACTCTCTTTCCATTTCACCTTCATTTGAAAACTCCGTTTCTCTCTCTCTCTCTCTCTCTGCGCCATGGGAACAGAGCTTCTCTGCTCGCAAGCTTCTTCTCTTTGTCATCTTCGCCGGGCACTTGAGGCGTTGCCAGCACTAGTTTTCGTTCTCTGCTTTTACTTCGCCTTTTGCTAAATGCGGTTCGTACAGTTCCTTGAGTGTGCACTCTGTAAGTCCATCTTCGTTTCTCTCTATTTATTTATTTATTTTTAGATTAGATGGCAAATTATAGTGTTTATTGAGTGGTTGATATGTACATTTTGGAACTTGATCACCGGGGCTGGTTTTGTATGTTGGCGATTTCAATTTTGGTTACGCTGTGCTTGGCGTGCGTTCGGTTTCCGTTTGGTTACTGAGAAAGTGTGGGAAAATACAGAAAGGTTCCAAAATTCAAATTTTCGTTGTTTAAACTGACTGAAACTAATTATAAAGCCGGAAAAAAAACAAAAAAAAA | |||||||||
gi|89484426|gb|DY640220.1|DY640220 PU2_plate5_K21 PU2 Prunus persica cDNA similar to hypothetical protein, mRNA sequence CGCATTTTCTCAGCAGCCAAA EST sequence (targeted fragment marked with yellow): CTGATTGAAATAGTTCGTTTGGCTGCCGAGAAAATTCGGGAAAGAAAAAAAAAAAAACCGAAAACCCAGTAATAAGAAAACCCTAGATTACGTATCCTCTTGTAGAGAAACTGCAAAAATACCCATTTGTAGCTGAGCAAGAAATTCTGGTGGAAATGACGAGCTATGTATGGAGGAAATATGCAGACTATATATACACAAAGTGGGAAAGAATGATTCTTTGGACCATGGTTGAGCCTTACAGCAGACCCAAATCGTTTACACCCTTGGTCACTATCTATGTAGCCGCTTTCTACACTGGGATCGTTGGCTCTGCTATCACTGAGCAGCTATACAAGGAGAAATACTGGGAGGATCATCCTGGCCAGGCAGTGCCTCTTATGAAGCCAAAGTTTTATGGAGGGCCGTGGAGGGTACAGCAAGGAGAGGTCCCAGCCAGTCAGTGACTGCCCTAGAAGAGTTGCAGAAATTGTTTCAAGAGTTTCTACCATTCTATGCGTTGTATTGGTTGATGAATGTCAAAGGTTTATTATGCCAAGAAGAATTTGCTATTCCATGAAGAACAAAAATGTAGAAAAATCCTTCATACATAATAAGAGAACTTGTCAAACTTCTCTTTGTA | |||||||||