| mature miRNA: CGCCAATGGAGATTTGTCCGG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164299061|gb|ES804981.1|ES804981 UFL_639_02 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CGCCAATGGAGATTTGTCCGG EST sequence (targeted fragment marked with yellow): GGCACGAGCGCAAAGGCAGAAGAAATGGAACAGAACGTACCTGTCATGACCAAAAGAGTATGGAGCATTGTAAAAGCAGTTCTCTTCATGATGAGGAAAGGTCTTTTATCTAAGAGGAAGCTCATGGTTGATCTTAACGTGATGCTCAAACGCGGCAAAATCGCCGGTGCCAAAGCCATTGGCAACCTCATGTTCCACCACCACAGCAACCGCCAGGTTTCATCATCCTCCACGGCGGAGGCGACTGCAACGGCAGTCCAGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACTACATCTTCCCTTTCAACCTCGCCGCCAAGAAGAAAAACAGCTACTACCACCATTTCTTCGCTTGCACCCACGCGCCTCCTACTCTCGACGACGACAACGTGGCCACCATGAACGCCCTTAAGGTTGCCTTGGAGATGATCAACAAGAACGACGGCAACAACAGCGTGGTTGCTGCTTCCCCTATGTTACCAGGGTTCGGACAAACTCCATTGGCGAGGCAACTCAGAATAACGGACTCACCGTTTCCTTTGAGGGATATGGACGAAGACGCTGACTACGTCGACAAGGCTGCTGAGGATTTCATTAACAGGTTTTACAAGGATTTAAAGCAACAAACTAAGTAAGAGATTGGCTGAGTTATAAGGGAACTCCTTCCTTTGCTGTGTTGTTTAAGATCATTTTCCCGATTGGATGTTTTATGTGGTTAATTTTTGGGATTTTAATTCTGTCGTAGATAATATATCAAACAAATAAAAGAAAATTATGGGGAAACCACTATTACCGACAAAAAAAAAAAAAAAAAAAAAAACTCGCGGCA | |||||||||
gi|84167798|gb|DR456446.1|DR456446 CM044H02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence CGCCAATGGAGATTTGTCCGG EST sequence (targeted fragment marked with yellow): GGCAGAAGAAATGGAACAGAACGTACCTGTCATGACCAAAAGAGTATGGAGCATTGTAAAAGCAGTTCTCTTCATGATGAGGAAAGGTCTTTTATCTAAGAGGAAGCTCATGGTTGATCTTAACGTGATGCTCAAACGCGGCAAAATCGCCGGTGCCAAAGCCATTGGCAACCTCATGTTCCACCACCACAGCAACCGCCAGGTTTCATCATCCTCCACGGCGGATGCGACTGCAACGGCAGTCCAGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACTACATCTTCCCTTTCAACCTCGCCGCCAAGAAGAAAAACAGCTACTACCACCATTTCTTCGCTTGCACCCACGCGCCTCCTACTCTCGACGACGACAACGTGGCCACCATGAACGCCCTTAAGGTTGCCTTGGAGATGATCAACAAGAACGACGGCAACAACAGCGTGGTTGCTGCTTCCCCTATGTTACCAGTGTTCGGACAAACTCCATTGGCGATGCAACTCAGAATAACGGACTCACCGTTTCCTTTGAGGGATATGGACGAAGACGCTGAC | |||||||||
gi|164366349|gb|ES800611.1|ES800611 UFL_617_82 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CGCCAATGGAGATTTGTCCGG EST sequence (targeted fragment marked with yellow): GGCACGAGGTGGGCTCGGCGGACCCATGGATTTTGGACGCTCCAAATCCAAGTTCCAAGAAGTGCCAGAGACTGGAGTTACCTTTGCTGACGTTGCTGGAGCTGGCCAGGCAAAGTTGGAACTCCAAGAAGTTGTCGATTTCTTGAAGAACCCAGACAAGTACACGGCTTTAGGAGCTAAAATCCCGAAAGGTTGTTTATTAGTTGGCCCTCCTGGTACCGGAAAAACTCCATTGGCGAGATCCGTGGCAGGGGAAGCCGGGGTGCCCTTTTTCTCATGCGCAGCTTCGGAGTTTGTGGAGTTGTTCGTTGGAGTAGGCACGTCCAGGGTAAGGGATTTGTTTGAAAAGGCAAAATCCAAAGCGCCTTGGATTGTATTCATAGATGAGATCGATGCTGTTGGGAGACAGAGAGGAGCTGGGCTTGGAGGAGGAAATGATGAAAGAGAGCAGACAATCAATCAGTTGCTGACTGAGATGGATGGATTTTCGGGGAATTCCGGTGTCATTGTTTTGGCAGCAACTAACAGGCCCGATGTTCTTGATGCGGCTTTATTGAGGCCCGGTAGGTTTGACCGTCAGGTTACAGTTGATAGGCCTGATGTTGCTGGGAGAGTGAAGATTCTTCAGGTGCATTCTAGAGGAAAGGCACTTGCAAAGGACGTGGATTTTGAAAAGATTGCAAGGAGAACCCCGGGTTTCACTGGAGCTGATTTGCAGAACCTGATGAATGAAGCGGCCATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAACAAAGATGAAATATCAGATGCCCTAGAGAGGATCATTGCTGGACCAGAGAAGAAAAATGGTTGGGCCTCCGTGAGAAAAAGAAATTGGTTGCCTATCATGGAGGTGGCCATGCTTTAGTTGGTGGACTCTTTCCTGAATATGATCCCTGTGGCAAAAATTTCTTTATTCCTCGGGGGTCAGCCTGGTGGCCTTACCTTTTTTGGCTCCAGGGGAGGGAAGGGTTTGAATCTTGGGTCCTACACCCCAAATTTACCTATAAAAAAACCAAAGGGGGCGTTGCCCCCTCGGGGGGAAGGGATTGGCGGAAAAGAGGAAATTTTTTGGGGGGAGGAAAAAGGGGAAAAAACGGGGAGCAACCAAAGGAGCTTTTTTTGGAAAGTTCTTCCCCGGAGTGGGACAGGGGCTTATATGGGTTGTTGAAAAAAATTTTGGGGGGTTCCCCGGAAAAAAGAAAATTTGACGACAGAAGAGTGTCGCCCTTTTGGTGGTGGGGAACACCGTGGGTGGGGAAAGAAATCTCTCTTTT | |||||||||
gi|109833585|gb|DW232150.1|DW232150 GH_OVFIB_01-01-11R_A11_InvR_22Jan04_095_F Ovules - day of anthesis Gossypium hirsutum cDNA, CGCCAATGGAGATTTGTCCGG EST sequence (targeted fragment marked with yellow): GTGTGCTGGAATTCGCCCTTAAGCAGTGGTATAACGCAGGTACGAGTTCAGCTGCAGCAACACCCCCAACTACATCTTCCCTTTCAACCTCGCCGCCAAGAAGAAAAACAGCTACTACCACCATTTCTTCGCTTGCACCCACGCGCCTCCTACTCTCGACGACGACAACGTGGCCACCATGAACGCCCTTAAGGTTGCCTTGGAGATGATCAACAAGAACGACGGCAACAACAGCGTGGTTGCTGCTTCCCCTATGTTACCAGGGTTCGGACAAGCTCCATTGGCGAGGCAACTCAGAATAACGGACTCACCGTTTCCTTTGAGGGATATGGACGAAGACGCTGACTACGTCGACAAGGCTGCTGAGGATTTCATTAACAGGTTTTACAAGGATTTAAAGCAACAAACTAAGTAAGAGATTGGCTGAGTTATAAGGGAACTCCTTCCTTTGCTGTGTTGTTTAAGATCATTTTCCCGATTGGATGTTTTATGTGGTTAATTTTTGGGATTTTAATTCTGTCGTAGATAATATATCAAACAAATAAAAGAAAATTATGGGGAAACCACTATTACCGACACATATGTCGTTGCTAATGCATGTTAATCGATTGGTTGAGTATATTATGTAT | |||||||||